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Active DNA demethylation at enhancers during the vertebrate phylotypic period
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1006/dbio.2001.0501openalex-snapshot
Dynamic Reprogramming of DNA Methylation in the Early Mouse Embryo
inferredcites →https://doi.org/10.1016/j.ccr.2011.06.001openalex-snapshot
Tet2 Loss Leads to Increased Hematopoietic Stem Cell Self-Renewal and Myeloid Transformation
inferredcites →https://doi.org/10.1016/j.cell.2008.03.029openalex-snapshot
Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
inferredcites →https://doi.org/10.1016/j.cell.2008.11.042openalex-snapshot
DNA Demethylation in Zebrafish Involves the Coupling of a Deaminase, a Glycosylase, and Gadd45
inferredcites →https://doi.org/10.1016/j.cell.2011.04.024openalex-snapshot
Primate CpG Islands Are Maintained by Heterogeneous Evolutionary Regimes Involving Minimal Selection
inferredcites →https://doi.org/10.1016/j.cell.2012.04.027openalex-snapshot
Base-Resolution Analysis of 5-Hydroxymethylcytosine in the Mammalian Genome
inferredcites →https://doi.org/10.1016/j.cell.2012.11.014openalex-snapshot
Tet3 CXXC Domain and Dioxygenase Activity Cooperatively Regulate Key Genes for Xenopus Eye and Neural Development
inferredcites →https://doi.org/10.1016/j.cell.2013.02.004openalex-snapshot
Dynamic Readers for 5-(Hydroxy)Methylcytosine and Its Oxidized Derivatives
inferredcites →https://doi.org/10.1016/j.cell.2013.04.030openalex-snapshot
Reprogramming the Maternal Zebrafish Genome after Fertilization to Match the Paternal Methylation Pattern
inferredcites →https://doi.org/10.1016/j.cell.2013.04.041openalex-snapshot
Sperm, but Not Oocyte, DNA Methylome Is Inherited by Zebrafish Early Embryos
inferredcites →https://doi.org/10.1016/j.cell.2013.07.020openalex-snapshot
Developmental Fate and Cellular Maturity Encoded in Human Regulatory DNA Landscapes
inferredcites →https://doi.org/10.1016/j.cell.2013.11.033openalex-snapshot
Rapid and Pervasive Changes in Genome-wide Enhancer Usage during Mammalian Development
inferredcites →https://doi.org/10.1016/j.cell.2014.04.017openalex-snapshot
Programming and Inheritance of Parental DNA Methylomes in Mammals
inferredcites →https://doi.org/10.1016/j.celrep.2015.03.020openalex-snapshot
TET3 Is Recruited by REST for Context-Specific Hydroxymethylation and Induction of Gene Expression
inferredcites →https://doi.org/10.1016/j.celrep.2015.07.025openalex-snapshot
Overlapping Requirements for Tet2 and Tet3 in Normal Development and Hematopoietic Stem Cell Emergence
inferredcites →https://doi.org/10.1016/j.devcel.2011.10.008openalex-snapshot
Prepatterning of Developmental Gene Expression by Modified Histones before Zygotic Genome Activation
inferredcites →https://doi.org/10.1016/j.devcel.2012.12.015openalex-snapshot
Combined Deficiency of Tet1 and Tet2 Causes Epigenetic Abnormalities but Is Compatible with Postnatal Development
inferredcites →https://doi.org/10.1016/j.stem.2011.07.010openalex-snapshot
Tet1 Is Dispensable for Maintaining Pluripotency and Its Loss Is Compatible with Embryonic and Postnatal Development
inferredcites →https://doi.org/10.1016/j.stem.2014.09.002openalex-snapshot
Tet3 and DNA Replication Mediate Demethylation of Both the Maternal and Paternal Genomes in Mouse Zygotes
inferredcites →https://doi.org/10.1016/j.stem.2015.04.001openalex-snapshot
Tex10 Coordinates Epigenetic Control of Super-Enhancer Activity in Pluripotency and Reprogramming
inferredcites →https://doi.org/10.1016/s0960-9822(00)00448-6openalex-snapshot
Active demethylation of the paternal genome in the mouse zygote
inferredcites →https://doi.org/10.1021/ac026117iopenalex-snapshot
Stop and Go Extraction Tips for Matrix-Assisted Laser Desorption/Ionization, Nanoelectrospray, and LC/MS Sample Pretreatment in Proteomics
inferredcites →https://doi.org/10.1021/pr900748nopenalex-snapshot
Combination of FASP and StageTip-Based Fractionation Allows In-Depth Analysis of the Hippocampal Membrane Proteome
inferredcites →https://doi.org/10.1038/nature05515openalex-snapshot
Gadd45a promotes epigenetic gene activation by repair-mediated DNA demethylation
inferredcites →https://doi.org/10.1038/nature06745openalex-snapshot
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
inferredcites →https://doi.org/10.1038/nature07730openalex-snapshot
ChIP-seq accurately predicts tissue-specific activity of enhancers
inferredcites →https://doi.org/10.1038/nature08866openalex-snapshot
Chromatin signature of embryonic pluripotency is established during genome activation
inferredcites →https://doi.org/10.1038/nature09632openalex-snapshot
A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns
inferredcites →https://doi.org/10.1038/nature09634openalex-snapshot
Gene expression divergence recapitulates the developmental hourglass model
inferredcites →https://doi.org/10.1038/nature09692openalex-snapshot
A unique chromatin signature uncovers early developmental enhancers in humans
inferredcites →https://doi.org/10.1038/nature09798openalex-snapshot
Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells
inferredcites →https://doi.org/10.1038/nature09934openalex-snapshot
Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells
inferredcites →https://doi.org/10.1038/nature10066openalex-snapshot
TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity
inferredcites →https://doi.org/10.1038/nature10098openalex-snapshot
Global quantification of mammalian gene expression control
inferredcites →https://doi.org/10.1038/nature10443openalex-snapshot
The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes
inferredcites →https://doi.org/10.1038/nature10716openalex-snapshot
DNA-binding factors shape the mouse methylome at distal regulatory regions
inferredcites →https://doi.org/10.1038/nature10960openalex-snapshot
A unique regulatory phase of DNA methylation in the early mammalian embryo
inferredcites →https://doi.org/10.1038/nature11243openalex-snapshot
A map of the cis-regulatory sequences in the mouse genome
inferredcites →https://doi.org/10.1038/nature13544openalex-snapshot
The DNA methylation landscape of human early embryos
inferredcites →https://doi.org/10.1038/nature13581openalex-snapshot
DNA methylation dynamics of the human preimplantation embryo
inferredcites →https://doi.org/10.1038/nature14465openalex-snapshot
Human body epigenome maps reveal noncanonical DNA methylation variation
inferredcites →https://doi.org/10.1038/nbt.1511openalex-snapshot
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
inferredcites →https://doi.org/10.1038/nbt.1630openalex-snapshot
GREAT improves functional interpretation of cis-regulatory regions
inferredcites →https://doi.org/10.1038/ncomms10148openalex-snapshot
Embryonic transcription is controlled by maternally defined chromatin state
inferredcites →https://doi.org/10.1038/ncomms1248openalex-snapshot
Comparative transcriptome analysis reveals vertebrate phylotypic period during organogenesis
inferredcites →https://doi.org/10.1038/ncomms7315openalex-snapshot
Developmental enhancers revealed by extensive DNA methylome maps of zebrafish early embryos
inferredcites →https://doi.org/10.1038/ng.2746openalex-snapshot
Epigenetic memory at embryonic enhancers identified in DNA methylation maps from adult mouse tissues
inferredcites →https://doi.org/10.1038/ng.708openalex-snapshot
Targets and dynamics of promoter DNA methylation during early mouse development
inferredcites →https://doi.org/10.1038/ng1966openalex-snapshot
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
inferredcites →https://doi.org/10.1038/nmeth.2688openalex-snapshot
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
inferredcites →https://doi.org/10.1038/nprot.2008.211openalex-snapshot
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
inferredcites →https://doi.org/10.1073/pnas.1016071107openalex-snapshot
Histone H3K27ac separates active from poised enhancers and predicts developmental state
inferredcites →https://doi.org/10.1073/pnas.1112317108openalex-snapshot
Ten-Eleven-Translocation 2 (TET2) negatively regulates homeostasis and differentiation of hematopoietic stem cells in mice
inferredcites →https://doi.org/10.1089/zeb.2014.1033openalex-snapshot
Dynamics of DNA Hydroxymethylation in Zebrafish
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/nar/gkl822openalex-snapshot
VISTA Enhancer Browser--a database of tissue-specific human enhancers
inferredcites →https://doi.org/10.1093/nar/gkn923openalex-snapshot
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
inferredcites →https://doi.org/10.1098/rstb.2011.0330openalex-snapshot
Reprogramming DNA methylation in the mammalian life cycle: building and breaking epigenetic barriers
inferredcites →https://doi.org/10.1101/gad.947102openalex-snapshot
DNA methylation patterns and epigenetic memory
inferredcites →https://doi.org/10.1101/gr.073585.107openalex-snapshot
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
inferredcites →https://doi.org/10.1101/gr.133009.111openalex-snapshot
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis
inferredcites →https://doi.org/10.1101/gr.134833.111openalex-snapshot
Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis
inferredcites →https://doi.org/10.1101/gr.3715005openalex-snapshot
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
inferredcites →https://doi.org/10.1126/science.1237905openalex-snapshot
Global Epigenomic Reconfiguration During Mammalian Brain Development
inferredcites →https://doi.org/10.1128/mcb.01061-13openalex-snapshot
TET2 Plays an Essential Role in Erythropoiesis by Regulating Lineage-Specific Genes via DNA Oxidative Demethylation in a Zebrafish Model
inferredcites →https://doi.org/10.1146/annurev-cellbio-100913-013027openalex-snapshot
Zygotic Genome Activation During the Maternal-to-Zygotic Transition
inferredcites →https://doi.org/10.1186/1471-2164-14-762openalex-snapshot
A genome-wide survey of maternal and embryonic transcripts during Xenopus tropicalis development
inferredcites →https://doi.org/10.1186/gb-2009-10-3-r25openalex-snapshot
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
inferredcites →https://doi.org/10.1186/gb-2010-11-10-r106openalex-snapshot
Differential expression analysis for sequence count data
inferredcites →https://doi.org/10.1186/gb-2012-13-7-r65openalex-snapshot
Developmental features of DNA methylation during activation of the embryonic zebrafish genome
inferredcites →https://doi.org/10.1186/s13059-014-0545-5openalex-snapshot
Ontogeny of CpG island methylation and specificity of DNMT3 methyltransferases during embryonic development in the mouse
inferredcites →https://doi.org/10.1242/dev.128.21.4113openalex-snapshot
Zebrafishcolourlessencodessox10and specifies non-ectomesenchymal neural crest fates
inferredcites →https://doi.org/10.1371/journal.pgen.1001134openalex-snapshot
Orphan CpG Islands Identify Numerous Conserved Promoters in the Mammalian Genome
inferredcites →https://doi.org/10.1371/journal.pgen.1003476openalex-snapshot
The Hourglass and the Early Conservation Models—Co-Existing Patterns of Developmental Constraints in Vertebrates
inferredcites →https://doi.org/10.4161/epi.19375openalex-snapshot
5-hydroxymethyl-cytosine enrichment of non-committed cells is not a universal feature of vertebrate development
inferredcites →https://doi.org/10.7554/elife.00348openalex-snapshot
Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates
inferredcites →https://doi.org/10.7554/elife.03397openalex-snapshot
Synthetic CpG islands reveal DNA sequence determinants of chromatin structure
inferredcites →https://doi.org/10.7554/elife.04094openalex-snapshot
High-throughput engineering of a mammalian genome reveals building principles of methylation states at CG rich regions
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.2139/ssrn.4755772openalex-extracted
Cross-Validation of Conserved Osteoblast-Specific Enhancers Illuminates Bone Diseases and Early Skeletal Evolution
inferred← citeshttps://doi.org/10.1002/9781119821946.ch6openalex-snapshot
Analytical Methods and Tools to Study the Epigenome
inferred← citeshttps://doi.org/10.1002/9783527830503.ch11openalex-snapshot
The Chromatin Interaction System
inferred← citeshttps://doi.org/10.1002/dvdy.80openalex-snapshot
Advancing genetic and genomic technologies deepen the pool for discovery in Xenopus tropicalis
inferred← citeshttps://doi.org/10.1002/dvg.22997openalex-snapshot
Using Xenopus to understand human disease and developmental disorders
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What we can learn from a tadpole about ciliopathies and airway diseases: Using systems biology in Xenopus to study cilia and mucociliary epithelia
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FOXA1‐TET1 Mediate the DNA Hypomethylation of IL‐4 Is Involved in Dust Fall PM2.5 Induced Lung Inflammation
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Evolution of homology: From archetype towards a holistic concept of cell type
inferred← citeshttps://doi.org/10.1007/978-1-0716-0849-4_7openalex-snapshot
Challenges and Opportunities of Genomic Approaches in Therapeutics Development
inferred← citeshttps://doi.org/10.1007/978-1-0716-1294-1_12openalex-snapshot
Identifying Protein–(Hydroxy)Methylated DNA Interactions Using Quantitative Interaction Proteomics
inferred← citeshttps://doi.org/10.1007/978-1-0716-1294-1_13openalex-snapshot
Purification of TET Proteins
inferred← citeshttps://doi.org/10.1007/978-1-0716-1294-1_14openalex-snapshot
Uncovering Sequence-Specific Transcription Factors Interacting with TET2
inferred← citeshttps://doi.org/10.1007/978-1-0716-1294-1_17openalex-snapshot
Generation and Molecular Characterization of Transient tet1/2/3 Zebrafish Knockouts
inferred← citeshttps://doi.org/10.1007/978-1-0716-1294-1_9openalex-snapshot
TAB-seq and ACE-seq Data Processing for Genome-Wide DNA hydroxymethylation Profiling
inferred← citeshttps://doi.org/10.1007/978-1-0716-2140-0_5openalex-snapshot
Nanopore Sequencing and Data Analysis for Base-Resolution Genome-Wide 5-Methylcytosine Profiling
inferred← citeshttps://doi.org/10.1007/978-3-030-18202-1_9openalex-snapshot
Boosting Macroevolution: Genomic Changes Triggering Qualitative Expansions of Regulatory Potential
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Epigenetics in Stem Cell Biology
inferred← citeshttps://doi.org/10.1007/978-3-319-59786-7_4openalex-snapshot
DNA Methylation Changes in Cancer
inferred← citeshttps://doi.org/10.1007/s00018-025-05730-9openalex-snapshot
DNA glycosylases Ogg1 and Mutyh influence gene expression of PRC2 targets associated with cognition
inferred← citeshttps://doi.org/10.1007/s10695-022-01149-2openalex-snapshot
DNA methylation of pck1 might contribute to the programming effects of early high-carbohydrate diets feeding to the glucose metabolism across two generations in zebrafish (Danio rerio)
inferred← citeshttps://doi.org/10.1007/s11033-020-05602-4openalex-snapshot
The role of molecular mechanism of Ten-Eleven Translocation2 (TET2) family proteins in pathogenesis of cardiovascular diseases (CVDs)
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DNA methylation clocks for clawed frogs reveal evolutionary conservation of epigenetic aging
inferred← citeshttps://doi.org/10.1007/s12185-016-2122-zopenalex-snapshot
Dysregulation of TET2 in hematologic malignancies
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Identification of gene-level methylation for disease prediction
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Comparative analysis of conserved non-coding elements identifies gene regulatory networks rewired during the water-to-land transition in vertebrates
inferred← citeshttps://doi.org/10.1016/b978-0-12-812433-8.00008-3openalex-snapshot
DNA Hydroxymethylation: Implications for Toxicology and Epigenetic Epidemiology
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Dynamics and Mechanisms of DNA Methylation Reprogramming
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Epigenetics and the evolution and feralization of domestic animals
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Epigenomic mechanisms and episignature biomarkers in rare diseases
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DNA methylation variation in the brain of laying hens in relation to differential behavioral patterns
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Remodeling of the epigenetic landscape in rainbow trout, Oncorhynchus mykiss, offspring in response to maternal choline intake
inferred← citeshttps://doi.org/10.1016/j.cbpa.2018.02.006openalex-snapshot
DNA methylation as a genomic marker of exposure to chemical and environmental agents
inferred← citeshttps://doi.org/10.1016/j.cbpb.2018.01.006openalex-snapshot
Epigenetics in teleost fish: From molecular mechanisms to physiological phenotypes
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DNA Hypermethylation Encroachment at CpG Island Borders in Cancer Is Predisposed by H3K4 Monomethylation Patterns
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Xenopus tropicalis osteoblast-specific open chromatin regions reveal promoters and enhancers involved in human skeletal phenotypes and shed light on early vertebrate evolution
inferred← citeshttps://doi.org/10.1016/j.cell.2018.01.022openalex-snapshot
Placeholder Nucleosomes Underlie Germline-to-Embryo DNA Methylation Reprogramming
inferred← citeshttps://doi.org/10.1016/j.cell.2024.08.011openalex-snapshot
5-Formylcytosine is an activating epigenetic mark for RNA Pol III during zygotic reprogramming
inferred← citeshttps://doi.org/10.1016/j.celrep.2018.12.076openalex-snapshot
TETs Regulate Proepicardial Cell Migration through Extracellular Matrix Organization during Zebrafish Cardiogenesis
inferred← citeshttps://doi.org/10.1016/j.cotox.2017.06.005openalex-snapshot
Progress in identifying epigenetic mechanisms of xenobiotic-induced non-genotoxic carcinogenesis
inferred← citeshttps://doi.org/10.1016/j.devcel.2016.08.004openalex-snapshot
Chromatin Control of Developmental Dynamics and Plasticity
inferred← citeshttps://doi.org/10.1016/j.devcel.2018.01.022openalex-snapshot
Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus
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Brd4 and P300 Confer Transcriptional Competency during Zygotic Genome Activation
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Germ cell differentiation requires Tdrd7-dependent chromatin and transcriptome reprogramming marked by germ plasm relocalization
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Diverse functions of DNA glycosylases processing oxidative base lesions in brain
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The timing of zygotic genome activation
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Remaining questions related to the hourglass model in vertebrate evolution
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DNA methylation and the preservation of cell identity
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On the origin of vertebrate body plan: Insights from the endoderm using the hourglass model
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The Role of DNA Methylation Reprogramming During Sex Determination and Transition in Zebrafish
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Raddeanin A suppresses intracellular 5Methylcytosine DNA modification engaged the metastasis of hepatocellular carcinoma
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Identifying Readers for (hydroxy)methylated DNA Using Quantitative Interaction Proteomics: Advances and Challenges Ahead
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TET1 Interacts Directly with NANOG via Independent Domains Containing Hydrophobic and Aromatic Residues
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Widespread Enhancer Dememorization and Promoter Priming during Parental-to-Zygotic Transition
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Extensive Recovery of Embryonic Enhancer and Gene Memory Stored in Hypomethylated Enhancer DNA
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TET mediated epigenetic regulation of iNKT cell lineage fate choice and function
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The Ground Zero of Organismal Life and Aging
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Genomic 8-oxoguanine modulates gene transcription independent of its repair by DNA glycosylases OGG1 and MUTYH
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Transgenerational effects of BPA on female reproduction
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2019.133897openalex-snapshot
Starvation stress affects the maternal development and larval fitness in zebrafish (Danio rerio)
inferred← citeshttps://doi.org/10.1016/j.stemcr.2017.05.026openalex-snapshot
Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation
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α-Ketoglutarate enhances bovine oocyte maturation and embryo development: insights from metabolomic and transcriptomic profiling
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Activation, decommissioning, and dememorization: enhancers in a life cycle
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Single-Cell DNA Methylation Profiling: Technologies and Biological Applications
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Heterochromatic histone modifications at transposons in Xenopus tropicalis embryos
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DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain
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A Peptide-Level Fully Annotated Data Set for Quantitative Evaluation of Precursor-Aware Mass Spectrometry Data Processing Algorithms
inferred← citeshttps://doi.org/10.1021/jacs.7b01459openalex-snapshot
Engineered Split-TET2 Enzyme for Inducible Epigenetic Remodeling
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Dissecting bipolar disorder complexity through epigenomic approach
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Tet proteins enhance the developmental hourglass
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Advances in targeted therapy for malignant lymphoma
inferred← citeshttps://doi.org/10.1038/s41392-023-01537-xopenalex-snapshot
TET (Ten-eleven translocation) family proteins: structure, biological functions and applications
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Epigenetic regulation of iron metabolism and ferroptosis in Parkinson’s disease: Identifying novel epigenetic targets
inferred← citeshttps://doi.org/10.1038/s41422-019-0234-8openalex-snapshot
Distinct enhancer signatures in the mouse gastrula delineate progressive cell fate continuum during embryo development
inferred← citeshttps://doi.org/10.1038/s41467-017-02762-zopenalex-snapshot
Distinct epigenetic programs regulate cardiac myocyte development and disease in the human heart in vivo
inferred← citeshttps://doi.org/10.1038/s41467-018-07451-zopenalex-snapshot
Heart enhancers with deeply conserved regulatory activity are established early in zebrafish development
inferred← citeshttps://doi.org/10.1038/s41467-019-10894-7openalex-snapshot
Zebrafish preserve global germline DNA methylation while sex-linked rDNA is amplified and demethylated during feminisation
inferred← citeshttps://doi.org/10.1038/s41467-019-10895-6openalex-snapshot
Retention of paternal DNA methylome in the developing zebrafish germline
inferred← citeshttps://doi.org/10.1038/s41467-019-11121-zopenalex-snapshot
Pioneer and repressive functions of p63 during zebrafish embryonic ectoderm specification
inferred← citeshttps://doi.org/10.1038/s41467-019-12325-zopenalex-snapshot
Tet inactivation disrupts YY1 binding and long-range chromatin interactions during embryonic heart development
inferred← citeshttps://doi.org/10.1038/s41467-020-18289-9openalex-snapshot
Transgenerational inheritance of impaired larval T cell development in zebrafish
inferred← citeshttps://doi.org/10.1038/s41467-020-19603-1openalex-snapshot
Recent evolution of a TET-controlled and DPPA3/STELLA-driven pathway of passive DNA demethylation in mammals
inferred← citeshttps://doi.org/10.1038/s41467-021-24169-7openalex-snapshot
Analysis of gene network bifurcation during optic cup morphogenesis in zebrafish
inferred← citeshttps://doi.org/10.1038/s41467-022-28434-1openalex-snapshot
Pluripotency factors determine gene expression repertoire at zygotic genome activation
inferred← citeshttps://doi.org/10.1038/s41467-024-46085-2openalex-snapshot
Extensive DNA methylome rearrangement during early lamprey embryogenesis
inferred← citeshttps://doi.org/10.1038/s41559-019-0983-2openalex-snapshot
Convergent evolution of a vertebrate-like methylome in a marine sponge
inferred← citeshttps://doi.org/10.1038/s41559-020-01310-1openalex-snapshot
The methylation landscape and its role in domestication and gene regulation in the chicken
inferred← citeshttps://doi.org/10.1038/s41559-020-01371-2openalex-snapshot
The emergence of the brain non-CpG methylation system in vertebrates
inferred← citeshttps://doi.org/10.1038/s41570-017-0069openalex-snapshot
Mapping and elucidating the function of modified bases in DNA
inferred← citeshttps://doi.org/10.1038/s41580-018-0074-2openalex-snapshot
Functions and mechanisms of epigenetic inheritance in animals
inferred← citeshttps://doi.org/10.1038/s41586-018-0734-6openalex-snapshot
Amphioxus functional genomics and the origins of vertebrate gene regulation
inferred← citeshttps://doi.org/10.1038/s41586-019-1825-8openalex-snapshot
Multi-omics profiling of mouse gastrulation at single-cell resolution
inferred← citeshttps://doi.org/10.1038/s41586-020-2119-xopenalex-snapshot
Spatiotemporal DNA methylome dynamics of the developing mouse fetus
inferred← citeshttps://doi.org/10.1038/s41586-023-05868-1openalex-snapshot
The little skate genome and the evolutionary emergence of wing-like fins
inferred← citeshttps://doi.org/10.1038/s41586-024-07898-9openalex-snapshot
DNA methylation controls stemness of astrocytes in health and ischaemia
inferred← citeshttps://doi.org/10.1038/s41588-017-0002-yopenalex-snapshot
TET proteins safeguard bivalent promoters from de novo methylation in human embryonic stem cells
inferred← citeshttps://doi.org/10.1038/s41588-018-0134-8openalex-snapshot
MTF2 recruits Polycomb Repressive Complex 2 by helical-shape-selective DNA binding
inferred← citeshttps://doi.org/10.1038/s41588-021-00888-xopenalex-snapshot
Orphan CpG islands amplify poised enhancer regulatory activity and determine target gene responsiveness
inferred← citeshttps://doi.org/10.1038/s41588-022-01089-wopenalex-snapshot
Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements
inferred← citeshttps://doi.org/10.1038/s41588-025-02303-1openalex-snapshot
Non-CG DNA methylation in animal genomes
inferred← citeshttps://doi.org/10.1038/s41592-018-0038-7openalex-snapshot
A reassessment of DNA-immunoprecipitation-based genomic profiling
inferred← citeshttps://doi.org/10.1038/s41594-024-01313-7openalex-snapshot
TET activity safeguards pluripotency throughout embryonic dormancy
inferred← citeshttps://doi.org/10.1038/s41598-019-43767-6openalex-snapshot
TET1 contributes to allergic airway inflammation and regulates interferon and aryl hydrocarbon receptor signaling pathways in bronchial epithelial cells
inferred← citeshttps://doi.org/10.1038/s41598-019-52577-9openalex-snapshot
Developmental transcriptomes of the sea star, Patiria miniata, illuminate how gene expression changes with evolutionary distance
inferred← citeshttps://doi.org/10.1038/s41598-020-57753-wopenalex-snapshot
Evolutionary history of DNA methylation related genes in chordates: new insights from multiple whole genome duplications
inferred← citeshttps://doi.org/10.1038/s41598-025-93825-5openalex-snapshot
tet2 and tet3 regulate cell fate specification and differentiation events during retinal development
inferred← citeshttps://doi.org/10.1038/s44318-025-00597-9openalex-snapshot
TET knockout cells transit between pluripotent states and exhibit precocious germline entry
inferred← citeshttps://doi.org/10.1038/s44318-025-00682-zopenalex-snapshot
Epimutations: raw material for evolution?
inferred← citeshttps://doi.org/10.1038/s44319-025-00569-4openalex-snapshot
Cell fate specification modes shape transcriptome evolution in the highly conserved spiral cleavage
inferred← citeshttps://doi.org/10.1042/bst20180606openalex-snapshot
TET enzymes, DNA demethylation and pluripotency
inferred← citeshttps://doi.org/10.1042/bst20180617openalex-snapshot
Packaging development: how chromatin controls transcription in zebrafish embryogenesis
inferred← citeshttps://doi.org/10.1042/bst20200695openalex-snapshot
Sequence determinants, function, and evolution of CpG islands
inferred← citeshttps://doi.org/10.1042/bst20210725openalex-snapshot
Encyclopaedia of eukaryotic DNA methylation: from patterns to mechanisms and functions
inferred← citeshttps://doi.org/10.1042/cs20210449openalex-snapshot
Epigenomic alterations in cancer: mechanisms and therapeutic potential
inferred← citeshttps://doi.org/10.1042/ebc20190029openalex-snapshot
Harnessing targeted DNA methylation and demethylation using dCas9
inferred← citeshttps://doi.org/10.1042/ebc20190030openalex-snapshot
Enhancer DNA methylation: implications for gene regulation
inferred← citeshttps://doi.org/10.1042/ebc20190037openalex-snapshot
The DNA methylation landscape in cancer
inferred← citeshttps://doi.org/10.1042/ebc20190038openalex-snapshot
DNA methylation in the vertebrate germline: balancing memory and erasure
inferred← citeshttps://doi.org/10.1073/pnas.1814514115openalex-snapshot
Silencing of retrotransposon-derived imprinted gene RTL1 is the main cause for postimplantational failures in mammalian cloning
inferred← citeshttps://doi.org/10.1080/14737159.2023.2284782openalex-snapshot
Identification of a novel epigenetic marker for typical and mosaic presentations of Fragile X syndrome
inferred← citeshttps://doi.org/10.1080/15592294.2017.1359382openalex-snapshot
Variant Histone H2afv reprograms DNA methylation during early zebrafish development
inferred← citeshttps://doi.org/10.1080/15592294.2019.1615353openalex-snapshot
Superovulation alters global DNA methylation in early mouse embryo development
inferred← citeshttps://doi.org/10.1080/15592294.2020.1795597openalex-snapshot
Cytosine methylation patterns suggest a role of methylation in plastic and adaptive responses to temperature in European grayling (Thymallus thymallus) populations
inferred← citeshttps://doi.org/10.1080/15592294.2022.2053816openalex-snapshot
Validation of a DNA methylation microarray for 285,000 CpG sites in the mouse genome
inferred← citeshttps://doi.org/10.1080/15592294.2023.2201517openalex-snapshot
Age-associated DNA methylation changes in Xenopus frogs
inferred← citeshttps://doi.org/10.1089/scd.2017.0128openalex-snapshot
Combined Methylome and Transcriptome Analysis During Rat Hepatic Stellate Cell Activation
inferred← citeshttps://doi.org/10.1093/biolre/ioac142openalex-snapshot
Temporal variation in DNA methylation during gonadal development in a reptile with temperature-dependent sex determination
inferred← citeshttps://doi.org/10.1093/eep/dvy020openalex-snapshot
Diesel exhaust and house dust mite allergen lead to common changes in the airway methylome and hydroxymethylome
inferred← citeshttps://doi.org/10.1093/gbe/evac036openalex-snapshot
Strong Parallel Differential Gene Expression Induced by Hatchery Rearing Weakly Associated with Methylation Signals in Adult Coho Salmon (O. kisutch)
inferred← citeshttps://doi.org/10.1093/gigascience/giaa027openalex-snapshot
Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C
inferred← citeshttps://doi.org/10.1093/gigascience/giad018openalex-snapshot
The Australasian dingo archetype: de novo chromosome-length genome assembly, DNA methylome, and cranial morphology
inferred← citeshttps://doi.org/10.1093/hmg/ddac189openalex-snapshot
Cell type-specific DNA methylome signatures reveal epigenetic mechanisms for neuronal diversity and neurodevelopmental disorder
inferred← citeshttps://doi.org/10.1093/molbev/msaa217openalex-snapshot
Embryo-Like Features in Developing Bacillus subtilis Biofilms
inferred← citeshttps://doi.org/10.1093/nar/gkaa1135openalex-snapshot
Developmental remodelling of non-CG methylation at satellite DNA repeats
inferred← citeshttps://doi.org/10.1093/nar/gkab322openalex-snapshot
Activation-induced deaminase is critical for the establishment of DNA methylation patterns prior to the germinal center reaction
inferred← citeshttps://doi.org/10.1093/nar/gkad695openalex-snapshot
Evolutionary conservation of embryonic DNA methylome remodelling in distantly related teleost species
inferred← citeshttps://doi.org/10.1093/nar/gkx869openalex-snapshot
Tet1 facilitates hypoxia tolerance by stabilizing the HIF-α proteins independent of its methylcytosine dioxygenase activity
inferred← citeshttps://doi.org/10.1093/nar/gky063openalex-snapshot
Decoding the dynamic DNA methylation and hydroxymethylation landscapes in endodermal lineage intermediates during pancreatic differentiation of hESC
inferred← citeshttps://doi.org/10.1098/rstb.2025.0030openalex-snapshot
DNA methylation is associated with genomic architecture, genetic variation and dispersal-related traits in an expanding invasion
inferred← citeshttps://doi.org/10.1101/2020.01.12.903336openalex-snapshot
Germ plasm localisation dynamics mark distinct phases of transcriptional and post-transcriptional regulation control in primordial germ cells
inferred← citeshttps://doi.org/10.1101/2020.02.16.949362openalex-snapshot
Pluripotency factors determine gene expression repertoire at zygotic genome activation
inferred← citeshttps://doi.org/10.1101/2022.03.21.485123openalex-snapshot
The little skate genome and the evolutionary emergence of wing-like fin appendages
inferred← citeshttps://doi.org/10.1101/2022.07.26.501603openalex-snapshot
Dysfunction of the Polycomb protein RYBP and of 5-methylcytosine oxidases leads to widespread CpG island hypermethylation and cell transformation
inferred← citeshttps://doi.org/10.1101/2022.08.02.502561openalex-snapshot
DNA methylation clocks for clawed frogs reveal evolutionary conservation of epigenetic ageing
inferred← citeshttps://doi.org/10.1101/2023.01.26.525801openalex-snapshot
The Australasian dingo archetype: De novo chromosome-length genome assembly, DNA methylome, and cranial morphology
inferred← citeshttps://doi.org/10.1101/2023.08.30.555543openalex-snapshot
Architecture and evolutionary conservation of Xenopus tropicalis osteoblast-specific regulatory regions shed light on bone diseases and early skeletal evolution
inferred← citeshttps://doi.org/10.1101/2023.12.15.571947openalex-snapshot
Epigenetic disruption of the RARγ complex impairs its function to bookmark AR enhancer interactions required for enzalutamide sensitivity in prostate cancer
inferred← citeshttps://doi.org/10.1101/2024.04.16.589756openalex-snapshot
DNA glycosylases Ogg1 and Mutyh mediate gene expression of PRC2 target genes important for neuronal processes underlying memory formation
inferred← citeshttps://doi.org/10.1101/2024.12.03.626448openalex-snapshot
Intrinsic DNA motif-binding capability of OsCLSY3 guides female-preferential RNA-directed DNA methylation
inferred← citeshttps://doi.org/10.1101/2025.05.27.656260openalex-snapshot
Maternal Vitamin C Deficiency and Genetic Risk Factors Contribute to Congenital Defects through Dysregulation of DNA Methylation
inferred← citeshttps://doi.org/10.1101/321604openalex-snapshot
Recent evolution of a TET-controlled and DPPA3/STELLA-driven pathway of passive demethylation in mammals
inferred← citeshttps://doi.org/10.1101/369231openalex-snapshot
Brd4 and P300 regulate zygotic genome activation through histone acetylation
inferred← citeshttps://doi.org/10.1101/438531openalex-snapshot
TET enzymes augment AID expression via 5hmC modifications at the Aicda superenhancer
inferred← citeshttps://doi.org/10.1101/519207openalex-snapshot
Single cell multi-omics profiling reveals a hierarchical epigenetic landscape during mammalian germ layer specification
inferred← citeshttps://doi.org/10.1101/gr.228833.117openalex-snapshot
Inherited DNA methylation primes the establishment of accessible chromatin during genome activation
inferred← citeshttps://doi.org/10.1104/pp.16.01948openalex-snapshot
Cyst Nematode Parasitism Induces Dynamic Changes in the Root Epigenome
inferred← citeshttps://doi.org/10.1111/gcb.15942openalex-snapshot
Windows of opportunity: Ocean warming shapes temperature‐sensitive epigenetic reprogramming and gene expression across gametogenesis and embryogenesis in marine stickleback
inferred← citeshttps://doi.org/10.1111/mec.15764openalex-snapshot
Footprints of global change in marine life: Inferring past environment based on DNA methylation and gene expression marks
inferred← citeshttps://doi.org/10.1111/mec.70292openalex-snapshot
Teleosts as Models for Epigenetic Inheritance
inferred← citeshttps://doi.org/10.1126/sciadv.aax0080openalex-snapshot
Reprogramming of DNA methylation at NEUROD2-bound sequences during cortical neuron differentiation
inferred← citeshttps://doi.org/10.1126/sciadv.abb9149openalex-snapshot
The chromosomal protein SMCHD1 regulates DNA methylation and the 2c-like state of embryonic stem cells by antagonizing TET proteins
inferred← citeshttps://doi.org/10.1126/sciadv.abl3858openalex-snapshot
Methylome inheritance and enhancer dememorization reset an epigenetic gate safeguarding embryonic programs
inferred← citeshttps://doi.org/10.1126/sciadv.abn2258openalex-snapshot
Active DNA demethylation of developmental cis -regulatory regions predates vertebrate origins
inferred← citeshttps://doi.org/10.1126/sciadv.ado5424openalex-snapshot
Developmental DNA demethylation is a determinant of neural stem cell identity and gliogenic competence
inferred← citeshttps://doi.org/10.1126/science.abe2762openalex-snapshot
Krüppel-like factor 1 is a core cardiomyogenic trigger in zebrafish
inferred← citeshttps://doi.org/10.1146/annurev-animal-030424-085652openalex-snapshot
Roles and Regulation of DNA Methylation in Early Mammalian Development
inferred← citeshttps://doi.org/10.1146/annurev-ecolsys-110617-062339openalex-snapshot
Development and Evolutionary Constraints in Animals
inferred← citeshttps://doi.org/10.1158/2159-8290.cd-18-0657openalex-snapshot
TET2 Deficiency Causes Germinal Center Hyperplasia, Impairs Plasma Cell Differentiation, and Promotes B-cell Lymphomagenesis
inferred← citeshttps://doi.org/10.1177/15330338241250317openalex-snapshot
Deciphering the Epigenetic Symphony of Cancer: Insights and Epigenetic Therapies Implications
inferred← citeshttps://doi.org/10.1186/s12859-019-2845-yopenalex-snapshot
HOME: a histogram based machine learning approach for effective identification of differentially methylated regions
inferred← citeshttps://doi.org/10.1186/s12894-023-01286-7openalex-snapshot
MiR-183-5p promotes migration and invasion of prostate cancer by targeting TET1
inferred← citeshttps://doi.org/10.1186/s13059-016-1001-5openalex-snapshot
In vivo genome-wide profiling reveals a tissue-specific role for 5-formylcytosine
inferred← citeshttps://doi.org/10.1186/s13059-017-1335-7openalex-snapshot
Regulatory remodeling in the allo-tetraploid frog Xenopus laevis
inferred← citeshttps://doi.org/10.1186/s13059-020-02189-8openalex-snapshot
A DNA methylation state transition model reveals the programmed epigenetic heterogeneity in human pre-implantation embryos
inferred← citeshttps://doi.org/10.1186/s13059-020-1948-0openalex-snapshot
Regenerating zebrafish fin epigenome is characterized by stable lineage-specific DNA methylation and dynamic chromatin accessibility
inferred← citeshttps://doi.org/10.1186/s13059-022-02762-3openalex-snapshot
Single-cell multi-omics profiling links dynamic DNA methylation to cell fate decisions during mouse early organogenesis
inferred← citeshttps://doi.org/10.1186/s13059-024-03346-zopenalex-snapshot
Annelid methylomes reveal ancestral developmental and aging-associated epigenetic erosion across Bilateria
inferred← citeshttps://doi.org/10.1186/s13072-017-0126-4openalex-snapshot
Differential DNA methylation at conserved non-genic elements and evidence for transgenerational inheritance following developmental exposure to mono(2-ethylhexyl) phthalate and 5-azacytidine in zebrafish
inferred← citeshttps://doi.org/10.1186/s13072-017-0154-0openalex-snapshot
Environmental epigenetics in zebrafish
inferred← citeshttps://doi.org/10.1186/s13072-018-0205-1openalex-snapshot
Consistent inverse correlation between DNA methylation of the first intron and gene expression across tissues and species
inferred← citeshttps://doi.org/10.1186/s13072-018-0228-7openalex-snapshot
Decoding the role of TET family dioxygenases in lineage specification
inferred← citeshttps://doi.org/10.1186/s13072-024-00555-5openalex-snapshot
Methylation patterns at the adjacent CpG sites within enhancers are a part of cell identity
inferred← citeshttps://doi.org/10.1186/s13148-020-00911-8openalex-snapshot
What impact does oocyte vitrification have on epigenetics and gene expression?
inferred← citeshttps://doi.org/10.1186/s13148-022-01297-5openalex-snapshot
Aberrant DNA hydroxymethylation reshapes transcription factor binding in myeloid neoplasms
inferred← citeshttps://doi.org/10.1186/s13148-022-01404-6openalex-snapshot
Vitamin C boosts DNA demethylation in TET2 germline mutation carriers
inferred← citeshttps://doi.org/10.1186/s13148-024-01653-7openalex-snapshot
Identification of miR-20b-5p as an inhibitory regulator in cardiac differentiation via TET2 and DNA hydroxymethylation
inferred← citeshttps://doi.org/10.1186/s13227-018-0095-0openalex-snapshot
Embryonic lethality is not sufficient to explain hourglass-like conservation of vertebrate embryos
inferred← citeshttps://doi.org/10.1186/s13227-025-00255-5openalex-snapshot
Toward mechanisms underlying the developmental hourglass: evolvability and phylotypic conservation
inferred← citeshttps://doi.org/10.1186/s40364-021-00331-7openalex-snapshot
Advances in the DNA methylation hydroxylase TET1
inferred← citeshttps://doi.org/10.1201/9781003050230-13openalex-snapshot
Dynamics of Chromatin Remodeling during Embryonic Development
inferred← citeshttps://doi.org/10.1210/endocr/bqaa155openalex-snapshot
Thyroid Hormone Induces DNA Demethylation in Xenopus Tadpole Brain
inferred← citeshttps://doi.org/10.1242/dev.200118openalex-snapshot
The role of DNA methylation in genome-wide gene regulation during development
inferred← citeshttps://doi.org/10.1242/dev.200398openalex-snapshot
Enhancer RNAs step forward: new insights into enhancer function
inferred← citeshttps://doi.org/10.1242/dmm.052862openalex-snapshot
Unique and overlapping behavioral effects of isoform-specific NRXN1 deletions
inferred← citeshttps://doi.org/10.1242/jeb.157891openalex-snapshot
DNA methylation profiles in red blood cells of adult hens correlate with their rearing conditions
inferred← citeshttps://doi.org/10.12688/f1000research.21809.1openalex-snapshot
Chromatin dynamics at the maternal to zygotic transition: recent advances from the zebrafish model
inferred← citeshttps://doi.org/10.1371/journal.pone.0166575openalex-snapshot
5'-Hydroxymethylcytosine Precedes Loss of CpG Methylation in Enhancers and Genes Undergoing Activation in Cardiomyocyte Maturation
inferred← citeshttps://doi.org/10.14393/ufu.te.2018.5openalex-snapshot
Caracterização epigenética e funcional do Transcrito Específico do X Inativo (XIST) durante o desenvolvimento embrionário inicial in vitro em bovinos
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