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Scaling drug indication curation through crowdsourcing

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/pds.4850openalex-snapshot

Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program.

inferredcites →https://doi.org/10.1007/978-3-642-31040-9_8openalex-snapshot

Validating Candidate Gene-Mutation Relations in MEDLINE Abstracts via Crowdsourcing

inferredcites →https://doi.org/10.1016/j.jbi.2010.11.001openalex-snapshot

Semi-automatic semantic annotation of PubMed queries: A study on quality, efficiency, satisfaction

inferredcites →https://doi.org/10.1016/j.jbi.2013.11.001openalex-snapshot

Towards generating a patient’s timeline: Extracting temporal relationships from clinical notes

inferredcites →https://doi.org/10.1016/j.jbi.2014.08.004openalex-snapshot

LabeledIn: Cataloging labeled indications for human drugs

inferredcites →https://doi.org/10.1037/0033-295x.101.2.343openalex-snapshot

The magical number seven, plus or minus two: Some limits on our capacity for processing information.

inferredcites →https://doi.org/10.1037/h0043158openalex-snapshot

The magical number seven, plus or minus two: Some limits on our capacity for processing information.

inferredcites →https://doi.org/10.1038/nbt.2495openalex-snapshot

Prize-based contests can provide solutions to computational biology problems

inferredcites →https://doi.org/10.1093/bioinformatics/btt333openalex-snapshot

Crowdsourcing for bioinformatics

inferredcites →https://doi.org/10.1093/bioinformatics/btt474openalex-snapshot

DNorm: disease name normalization with pairwise learning to rank

inferredcites →https://doi.org/10.1093/database/bap018openalex-snapshot

Understanding PubMed(R) user search behavior through log analysis

inferredcites →https://doi.org/10.1093/database/bas037openalex-snapshot

Collaborative biocuration--text-mining development task for document prioritization for curation

inferredcites →https://doi.org/10.1093/database/bas040openalex-snapshot

Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR

inferredcites →https://doi.org/10.1093/database/bas041openalex-snapshot

Accelerating literature curation with text-mining tools: a case study of using PubTator to curate genes in PubMed abstracts

inferredcites →https://doi.org/10.1093/database/bas042openalex-snapshot

Prioritizing PubMed articles for the Comparative Toxicogenomic Database utilizing semantic information

inferredcites →https://doi.org/10.1093/database/bas049openalex-snapshot

BioCreative-2012 Virtual Issue

inferredcites →https://doi.org/10.1093/database/bas053openalex-snapshot

Using the OntoGene pipeline for the triage task of BioCreative 2012

inferredcites →https://doi.org/10.1093/database/bas056openalex-snapshot

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

inferredcites →https://doi.org/10.1093/database/bau070openalex-snapshot

Text-mining-assisted biocuration workflows in Argo

inferredcites →https://doi.org/10.1093/database/bau081openalex-snapshot

RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information

inferredcites →https://doi.org/10.1093/database/bau086openalex-snapshot

Overview of the gene ontology task at BioCreative IV

inferredcites →https://doi.org/10.1093/database/bau094openalex-snapshot

Hybrid curation of gene–mutation relations combining automated extraction and crowdsourcing

inferredcites →https://doi.org/10.1093/nar/gkr1196openalex-snapshot

The 2012 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection

inferredcites →https://doi.org/10.1093/nar/gkt441openalex-snapshot

PubTator: a web-based text mining tool for assisting biocuration

inferredcites →https://doi.org/10.1109/bibm.2010.5706551openalex-snapshot

An algorithm for mapping short reads to a dynamically changing genomic sequence

inferredcites →https://doi.org/10.1109/bibm.2012.6392709openalex-snapshot

Bridging encounter forms and electronic medical record databases: Annotation, mapping, and integration

inferredcites →https://doi.org/10.1109/bibm.2012.6392722openalex-snapshot

A new method for computational drug repositioning using drug pairwise similarity

inferredcites →https://doi.org/10.1109/ichi.2013.11openalex-snapshot

Toward Creating a Gold Standard of Drug Indications from FDA Drug Labels

inferredcites →https://doi.org/10.1126/scitranslmed.3003377openalex-snapshot

Data-Driven Prediction of Drug Effects and Interactions

inferredcites →https://doi.org/10.1136/amiajnl-2012-000852openalex-snapshot

Development and evaluation of a crowdsourcing methodology for knowledge base construction: identifying relationships between clinical problems and medications

inferredcites →https://doi.org/10.1136/amiajnl-2012-001291openalex-snapshot

Extracting drug indication information from structured product labels using natural language processing

inferredcites →https://doi.org/10.1136/amiajnl-2012-001431openalex-snapshot

Development and evaluation of an ensemble resource linking medications to their indications

inferredcites →https://doi.org/10.1136/bmj.321.7258.429openalex-snapshot

A taxonomy of generic clinical questions: classification study

inferredcites →https://doi.org/10.1145/1753846.1753873openalex-snapshot

Who are the crowdworkers?

inferredcites →https://doi.org/10.1145/2110363.2110397openalex-snapshot

Exploiting semantic structure for mapping user-specified form terms to SNOMED CT concepts

inferredcites →https://doi.org/10.1162/coli_a_00057openalex-snapshot

Amazon Mechanical Turk: Gold Mine or Coal Mine?

inferredcites →https://doi.org/10.1177/0165551512437638openalex-snapshot

Towards an integrated crowdsourcing definition

inferredcites →https://doi.org/10.1186/1471-2105-12-s8-s2openalex-snapshot

The gene normalization task in BioCreative III

inferredcites →https://doi.org/10.1186/1471-2105-12-s8-s4openalex-snapshot

BioCreative III interactive task: an overview

inferredcites →https://doi.org/10.1186/1471-2105-14-s16-s3openalex-snapshot

Pathway-based drug repositioning using causal inference

inferredcites →https://doi.org/10.1186/1471-2105-6-s1-s16openalex-snapshot

Evaluation of BioCreAtIvE assessment of task 2

inferredcites →https://doi.org/10.1186/1471-2105-9-402openalex-snapshot

Abbreviation definition identification based on automatic precision estimates

inferredcites →https://doi.org/10.2196/jmir.2426openalex-snapshot

Web 2.0-Based Crowdsourcing for High-Quality Gold Standard Development in Clinical Natural Language Processing

inferredcites →https://doi.org/10.3115/1613715.1613751openalex-snapshot

Cheap and fast---but is it good?

inferredcites →https://doi.org/10.5555/1756006.1859894openalex-snapshot

Learning From Crowds

inferredcites →https://doi.org/10.9776/13197openalex-snapshot

Understanding the EMR error control practices among gynecologic physicians

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/widm.1288openalex-snapshot

Machine learning from crowds: A systematic review of its applications

inferred← citeshttps://doi.org/10.1007/s10619-017-7209-xopenalex-snapshot

Crowd enabled curation and querying of large and noisy text mined protein interaction data

inferred← citeshttps://doi.org/10.1007/s10726-023-09840-2openalex-snapshot

Robust and High-Accessibility Ranking Method for Crowdsourcing-Based Decision Making

inferred← citeshttps://doi.org/10.1007/s11606-017-4246-0openalex-snapshot

Comparing Amazon’s Mechanical Turk Platform to Conventional Data Collection Methods in the Health and Medical Research Literature

inferred← citeshttps://doi.org/10.1007/s40264-020-01028-wopenalex-snapshot

Developing Crowdsourced Training Data Sets for Pharmacovigilance Intelligent Automation

inferred← citeshttps://doi.org/10.1016/b978-0-12-802115-6.00016-1openalex-snapshot

Crowdsourcing Advancements in Health Care Research

inferred← citeshttps://doi.org/10.1016/j.chb.2020.106620openalex-snapshot

The face of trust: The effect of robot face ratio on consumer preference

inferred← citeshttps://doi.org/10.1016/j.ijmedinf.2019.103970openalex-snapshot

Information on adverse drug reactions—Proof of principle for a structured database that allows customization of drug information

inferred← citeshttps://doi.org/10.1016/j.jbi.2017.04.003openalex-snapshot

Crowd control: Effectively utilizing unscreened crowd workers for biomedical data annotation

inferred← citeshttps://doi.org/10.1016/j.jbi.2017.05.006openalex-snapshot

Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop

inferred← citeshttps://doi.org/10.1016/j.jbi.2021.103902openalex-snapshot

Relation extraction from DailyMed structured product labels by optimally combining crowd, experts and machines

inferred← citeshttps://doi.org/10.1021/acs.chemrev.6b00851openalex-snapshot

Information Retrieval and Text Mining Technologies for Chemistry

inferred← citeshttps://doi.org/10.1038/ncomms12846openalex-snapshot

Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd

inferred← citeshttps://doi.org/10.1038/sdata.2018.1openalex-snapshot

A dataset of 200 structured product labels annotated for adverse drug reactions

inferred← citeshttps://doi.org/10.1093/bib/bbv020openalex-snapshot

A survey of current trends in computational drug repositioning

inferred← citeshttps://doi.org/10.1093/bib/bbv021openalex-snapshot

Crowdsourcing in biomedicine: challenges and opportunities

inferred← citeshttps://doi.org/10.1093/bib/bbv024openalex-snapshot

Community challenges in biomedical text mining over 10 years: success, failure and the future

inferred← citeshttps://doi.org/10.1093/bioinformatics/btz678openalex-snapshot

Applying citizen science to gene, drug and disease relationship extraction from biomedical abstracts

inferred← citeshttps://doi.org/10.1093/database/baaa104openalex-snapshot

A hybrid approach toward biomedical relation extraction training corpora: combining distant supervision with crowdsourcing

inferred← citeshttps://doi.org/10.1093/database/bav116openalex-snapshot

Biocuration with insufficient resources and fixed timelines

inferred← citeshttps://doi.org/10.1093/database/baw051openalex-snapshot

A crowdsourcing workflow for extracting chemical-induced disease relations from free text

inferred← citeshttps://doi.org/10.1093/database/baw115openalex-snapshot

Crowdsourcing and curation: perspectives from biology and natural language processing

inferred← citeshttps://doi.org/10.1093/database/baw119openalex-snapshot

Overview of the interactive task in BioCreative V

inferred← citeshttps://doi.org/10.1109/tcbb.2021.3059807openalex-snapshot

Overcoming Sparseness of Biomedical Networks to Identify Drug Repositioning Candidates

inferred← citeshttps://doi.org/10.1186/s13326-021-00234-4openalex-snapshot

InContext: curation of medical context for drug indications

inferred← citeshttps://doi.org/10.1215/15476715-11199970openalex-snapshot

Amazon Mechanical Turk: The Human Sciences’ Labor Problem

inferred← citeshttps://doi.org/10.15346/hc.v6i1.6openalex-snapshot

MetaCrowd: Crowdsourcing Biomedical Metadata Quality Assessment

inferred← citeshttps://doi.org/10.2139/ssrn.5344843openalex-snapshot

Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd

inferred← citeshttps://doi.org/10.2196/jmir.9330openalex-snapshot

Mapping of Crowdsourcing in Health: Systematic Review

inferred← citeshttps://doi.org/10.2196/resprot.5028openalex-snapshot

Using Nonexperts for Annotating Pharmacokinetic Drug-Drug Interaction Mentions in Product Labeling: A Feasibility Study

inferred← citeshttps://doi.org/10.24251/hicss.2023.271openalex-snapshot

The Trending Customer Needs (TCN) Dataset: A Benchmarking and Automated Evaluation Approach for New Product Development

inferred← citeshttps://doi.org/10.3389/frai.2021.711467openalex-snapshot

DICE: A Drug Indication Classification and Encyclopedia for AI-Based Indication Extraction

inferred← citeshttps://doi.org/10.3390/biomimetics8040335openalex-snapshot

Facial Anthropomorphic Trustworthiness Scale for Social Robots: A Hybrid Approach

inferred← citeshttps://doi.org/10.3414/me15-01-0122openalex-snapshot

Is the Juice Worth the Squeeze? Costs and Benefits of Multiple Human Annotators for Clinical Text De-identification

inferred← citeshttps://doi.org/10.60692/x27bh-vs471openalex-snapshot

Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd

inferred← citeshttps://doi.org/10.64898/2026.01.06.26343341openalex-snapshot

Development and validation of a generative AI-assisted medication-indication knowledge base

inferred← citeshttps://doi.org/10.7189/jogh.08.010502openalex-snapshot

Applications of crowdsourcing in health: an overview

inferred← citeshttps://doi.org/10.7554/elife.26726openalex-snapshot

Systematic integration of biomedical knowledge prioritizes drugs for repurposing

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