On the public citation graph

Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd

https://doi.org/10.2139/ssrn.5344843
0 signed · 70 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/9780470685983.ch12openalex-snapshot
Principal Variance Components Analysis: Estimating Batch Effects in Microarray Gene Expression Data
inferredcites →https://doi.org/10.1002/asi.21234openalex-snapshot
Introduction to Information Retrieval
inferredcites →https://doi.org/10.1002/gcc.20154openalex-snapshot
Analysis of myelodysplastic syndromes with complex karyotypes by high‐resolution comparative genomic hybridization and subtelomeric CGH array
inferredcites →https://doi.org/10.1002/mus.20522openalex-snapshot
Facioscapulohumeral muscular dystrophy
inferredcites →https://doi.org/10.1007/0-387-21679-0_12openalex-snapshot
SAM Thresholding and False Discovery Rates for Detecting Differential Gene Expression in DNA Microarrays
inferredcites →https://doi.org/10.1007/s00018-003-3285-3openalex-snapshot
Molecular basis of facioscapulohumeral muscular dystrophy
inferredcites →https://doi.org/10.1007/s10994-006-6226-1openalex-snapshot
Extremely randomized trees
inferredcites →https://doi.org/10.1016/0029-7844(94)00383-oopenalex-snapshot
Hormone replacement therapy and endometrial cancer risk: A meta-analysis
inferredcites →https://doi.org/10.1016/j.ajog.2011.05.042openalex-snapshot
Understanding obesity and endometrial cancer risk: opportunities for prevention
inferredcites →https://doi.org/10.1016/j.ebiom.2015.05.009openalex-snapshot
Crowdsourcing the General Public for Large Scale Molecular Pathology Studies in Cancer
inferredcites →https://doi.org/10.1016/j.ygyno.2012.03.032openalex-snapshot
Insulin resistance: A significant risk factor of endometrial cancer
inferredcites →https://doi.org/10.1016/j.ymeth.2014.11.020openalex-snapshot
DISEASES: Text mining and data integration of disease–gene associations
inferredcites →https://doi.org/10.1021/ci100050topenalex-snapshot
Extended-Connectivity Fingerprints
inferredcites →https://doi.org/10.1023/a:1010933404324openalex-snapshot
Random Forests
inferredcites →https://doi.org/10.1023/a:1018054314350openalex-snapshot
Bagging Predictors
inferredcites →https://doi.org/10.1038/nature11003openalex-snapshot
The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity
inferredcites →https://doi.org/10.1038/ng.2653openalex-snapshot
The Genotype-Tissue Expression (GTEx) project
inferredcites →https://doi.org/10.1038/ng.2764openalex-snapshot
The Cancer Genome Atlas Pan-Cancer analysis project
inferredcites →https://doi.org/10.1038/ng1928openalex-snapshot
PTEN-deficient intestinal stem cells initiate intestinal polyposis
inferredcites →https://doi.org/10.1038/nm1649openalex-snapshot
Mast cells are required for angiogenesis and macroscopic expansion of Myc-induced pancreatic islet tumors
inferredcites →https://doi.org/10.1038/nmeth.2630openalex-snapshot
ExpressionBlast: mining large, unstructured expression databases
inferredcites →https://doi.org/10.1038/nmeth.3249openalex-snapshot
Targeted exploration and analysis of large cross-platform human transcriptomic compendia
inferredcites →https://doi.org/10.1038/nrc1254openalex-snapshot
Peroxisome-proliferator-activated receptors and cancers: complex stories
inferredcites →https://doi.org/10.1038/nrc2536openalex-snapshot
Insulin and insulin-like growth factor signalling in neoplasia
inferredcites →https://doi.org/10.1056/nejm197901043000103openalex-snapshot
Endometrial Cancer and Estrogen Use
inferredcites →https://doi.org/10.1056/nejmra013339openalex-snapshot
Imatinib Mesylate — A New Oral Targeted Therapy
inferredcites →https://doi.org/10.1073/pnas.0308334100openalex-snapshot
The role of Shc and insulin-like growth factor 1 receptor in mediating the translocation of estrogen receptor α to the plasma membrane
inferredcites →https://doi.org/10.1073/pnas.1000138107openalex-snapshot
Discovery of drug mode of action and drug repositioning from transcriptional responses
inferredcites →https://doi.org/10.1074/jbc.m510461200openalex-snapshot
Opposite Transcriptional Regulation in Skeletal Muscle of AMP-activated Protein Kinase γ3 R225Q Transgenic Versus Knock-out Mice
inferredcites →https://doi.org/10.1074/jbc.m910345199openalex-snapshot
Estrogen Receptor α Rapidly Activates the IGF-1 Receptor Pathway
inferredcites →https://doi.org/10.1093/bib/bbv021openalex-snapshot
Crowdsourcing in biomedicine: challenges and opportunities
inferredcites →https://doi.org/10.1093/bioinformatics/btm462openalex-snapshot
CellMontage: similar expression profile search server
inferredcites →https://doi.org/10.1093/bioinformatics/btr260openalex-snapshot
Molecular signatures database (MSigDB) 3.0
inferredcites →https://doi.org/10.1093/bioinformatics/btr548openalex-snapshot
ProfileChaser: searching microarray repositories based on genome-wide patterns of differential expression
inferredcites →https://doi.org/10.1093/bioinformatics/bts034openalex-snapshot
The sva package for removing batch effects and other unwanted variation in high-throughput experiments
inferredcites →https://doi.org/10.1093/bioinformatics/btt317openalex-snapshot
BeCAS: biomedical concept recognition services and visualization
inferredcites →https://doi.org/10.1093/bioinformatics/btt333openalex-snapshot
Crowdsourcing for bioinformatics
inferredcites →https://doi.org/10.1093/bioinformatics/btu819openalex-snapshot
mirPub: a database for searching microRNA publications
inferredcites →https://doi.org/10.1093/bioinformatics/btv297openalex-snapshot
GEO2Enrichr: browser extension and server app to extract gene sets from GEO and analyze them for biological functions
inferredcites →https://doi.org/10.1093/database/bau094openalex-snapshot
Hybrid curation of gene–mutation relations combining automated extraction and crowdsourcing
inferredcites →https://doi.org/10.1093/database/bav016openalex-snapshot
Scaling drug indication curation through crowdsourcing
inferredcites →https://doi.org/10.1093/jnci/91.13.1131openalex-snapshot
Risk of Endometrial Cancer Following Estrogen Replacement With and Without Progestins
inferredcites →https://doi.org/10.1093/nar/gkac888openalex-snapshot
Genenames.org: the HGNC resources in 2023
inferredcites →https://doi.org/10.1093/nar/gks1174openalex-snapshot
ArrayExpress update—trends in database growth and links to data analysis tools
inferredcites →https://doi.org/10.1093/nar/gks1193openalex-snapshot
NCBI GEO: archive for functional genomics data sets—update
inferredcites →https://doi.org/10.1093/nar/gkt1068openalex-snapshot
DrugBank 4.0: shedding new light on drug metabolism
inferredcites →https://doi.org/10.1093/nar/gku1011openalex-snapshot
Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data
inferredcites →https://doi.org/10.1093/nar/gkv007openalex-snapshot
limma powers differential expression analyses for RNA-sequencing and microarray studies
inferredcites →https://doi.org/10.1111/j.1440-1746.1992.tb01026.xopenalex-snapshot
Hypercholesterolaemia in patients with hepatocellular carcinoma
inferredcites →https://doi.org/10.1111/j.1440-1746.2007.05115.xopenalex-snapshot
Reduced expression of low‐density lipoprotein receptor in hepatocellular carcinoma with paraneoplastic hypercholesterolemia
inferredcites →https://doi.org/10.1126/science.1132939openalex-snapshot
The Connectivity Map: Using Gene-Expression Signatures to Connect Small Molecules, Genes, and Disease
inferredcites →https://doi.org/10.1126/scitranslmed.3002648openalex-snapshot
Computational Repositioning of the Anticonvulsant Topiramate for Inflammatory Bowel Disease
inferredcites →https://doi.org/10.1158/0008-5472.can-07-6463openalex-snapshot
Targeting CD24 for Treatment of Colorectal and Pancreatic Cancer by Monoclonal Antibodies or Small Interfering RNA
inferredcites →https://doi.org/10.1186/1471-2105-12-443openalex-snapshot
SIGNATURE: A workbench for gene expression signature analysis
inferredcites →https://doi.org/10.1186/1471-2105-15-79openalex-snapshot
The characteristic direction: a geometrical approach to identify differentially expressed genes
inferredcites →https://doi.org/10.1186/1471-2164-10-411openalex-snapshot
GEM-TREND: a web tool for gene expression data mining toward relevant network discovery
inferredcites →https://doi.org/10.1186/1471-2164-13-12openalex-snapshot
A searchable cross-platform gene expression database reveals connections between drug treatments and disease
inferredcites →https://doi.org/10.1186/1471-2164-9-285openalex-snapshot
Sources of variation in baseline gene expression levels from toxicogenomics study control animals across multiple laboratories
inferredcites →https://doi.org/10.1186/s12918-015-0173-zopenalex-snapshot
Dynamics of the discovery process of protein-protein interactions from low content studies
inferredcites →https://doi.org/10.1200/jco.2012.47.7836openalex-snapshot
Imatinib for Melanomas Harboring Mutationally Activated or Amplified KIT Arising on Mucosal, Acral, and Chronically Sun-Damaged Skin
inferredcites →https://doi.org/10.1210/jc.2012-2374openalex-snapshot
Targeting Estrogen Receptor-α Reduces Adrenocortical Cancer (ACC) Cell Growthin Vitroandin Vivo: Potential Therapeutic Role of Selective Estrogen Receptor Modulators (SERMs) for ACC Treatment
inferredcites →https://doi.org/10.1214/aos/1013203451openalex-snapshot
Greedy function approximation: A gradient boosting machine.
inferredcites →https://doi.org/10.1371/journal.pgen.0030161openalex-snapshot
Capturing Heterogeneity in Gene Expression Studies by Surrogate Variable Analysis
inferredcites →https://doi.org/10.1371/journal.pgen.0030161.eoropenalex-snapshot
Capturing Heterogeneity in Gene Expression Studies by "Surrogate Variable Analysis"
inferredcites →https://doi.org/10.1371/journal.pone.0006536openalex-snapshot
Human Disease-Drug Network Based on Genomic Expression Profiles
inferredcites →https://doi.org/10.14778/2735471.2735474openalex-snapshot
Scaling up crowd-sourcing to very large datasets
inferredcites →https://doi.org/10.2196/jmir.3962openalex-snapshot
Ranking Adverse Drug Reactions With Crowdsourcing
inferredcites →https://doi.org/10.2307/2531595openalex-snapshot
Comparing the Areas under Two or More Correlated Receiver Operating Characteristic Curves: A Nonparametric Approach
inferredcites →https://doi.org/10.2337/diabetes.54.12.3358openalex-snapshot
Peroxisome Proliferator–Activated Receptor (PPAR)α Activation Increases Adiponectin Receptors and Reduces Obesity-Related Inflammation in Adipose Tissue
inferredcites →https://doi.org/10.5555/1953048.2078195openalex-snapshot
Scikit-learn: Machine Learning in Python
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.