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Characterizing the Influence of Effective Population Size on the Rate of Adaptation: Gillespie’s Darwin Domain

https://doi.org/10.1093/gbe/evr063
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferreduses_data →https://doi.org/10.5281/zenodo.10723540zenodo-depositor-declared
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The Role of Population Size in Molecular Evolution
inferredcites →https://doi.org/10.1007/s00239-003-0022-3openalex-snapshot
Bayesian Analysis Suggests that Most Amino Acid Replacements in Drosophila Are Driven by Positive Selection
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Can one learn history from the allelic spectrum?
inferredcites →https://doi.org/10.1016/j.tree.2006.06.015openalex-snapshot
The genomic rate of adaptive evolution
inferredcites →https://doi.org/10.1017/s0016672300014634openalex-snapshot
The hitch-hiking effect of a favourable gene
inferredcites →https://doi.org/10.1017/s0016672300032365openalex-snapshot
The effect of background selection against deleterious mutations on weakly selected, linked variants
inferredcites →https://doi.org/10.1017/s0016672305007743openalex-snapshot
The detection of shared and ancestral polymorphisms
inferredcites →https://doi.org/10.1017/s0016672308009579openalex-snapshot
The hitch-hiking effect of a favourable gene
inferredcites →https://doi.org/10.1038/217624a0openalex-snapshot
Evolutionary Rate at the Molecular Level
inferredcites →https://doi.org/10.1038/246096a0openalex-snapshot
Slightly Deleterious Mutant Substitutions in Evolution
inferredcites →https://doi.org/10.1038/351652a0openalex-snapshot
Adaptive protein evolution at the Adh locus in Drosophila
inferredcites →https://doi.org/10.1038/4151022aopenalex-snapshot
Adaptive protein evolution in Drosophila
inferredcites →https://doi.org/10.1038/416531aopenalex-snapshot
The cost of inbreeding in Arabidopsis
inferredcites →https://doi.org/10.1038/nature04240openalex-snapshot
Natural selection on protein-coding genes in the human genome
inferredcites →https://doi.org/10.1038/sj.hdy.6800967openalex-snapshot
Progress and prospects in mapping recent selection in the genome
inferredcites →https://doi.org/10.1073/pnas.0502300102openalex-snapshot
Simultaneous inference of selection and population growth from patterns of variation in the human genome
inferredcites →https://doi.org/10.1073/pnas.94.15.7730openalex-snapshot
Neutral behavior of shared polymorphism
inferredcites →https://doi.org/10.1093/bioinformatics/13.5.555openalex-snapshot
PAML: a program package for phylogenetic analysis by maximum likelihood
inferredcites →https://doi.org/10.1093/bioinformatics/18.2.337openalex-snapshot
Generating samples under a Wright–Fisher neutral model of genetic variation
inferredcites →https://doi.org/10.1093/bioinformatics/btn522openalex-snapshot
A flexible forward simulator for populations subject to selection and demography
inferredcites →https://doi.org/10.1093/gbe/evp031openalex-snapshot
On Reconciling Single and Recurrent Hitchhiking Models
inferredcites →https://doi.org/10.1093/genetics/116.1.153openalex-snapshot
A Test of Neutral Molecular Evolution Based on Nucleotide Data
inferredcites →https://doi.org/10.1093/genetics/123.3.585openalex-snapshot
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.
inferredcites →https://doi.org/10.1093/genetics/123.4.887openalex-snapshot
The "hitchhiking effect" revisited.
inferredcites →https://doi.org/10.1093/genetics/129.3.897openalex-snapshot
The selection-mutation-drift theory of synonymous codon usage.
inferredcites →https://doi.org/10.1093/genetics/134.4.1289openalex-snapshot
The effect of deleterious mutations on neutral molecular variation.
inferredcites →https://doi.org/10.1093/genetics/155.2.909openalex-snapshot
Genetic Drift in an Infinite Population: The Pseudohitchhiking Model
inferredcites →https://doi.org/10.1093/genetics/155.2.929openalex-snapshot
The Effects of Hill-Robertson Interference Between Weakly Selected Mutations on Patterns of Molecular Evolution and Variation
inferredcites →https://doi.org/10.1093/genetics/155.3.1405openalex-snapshot
Hitchhiking Under Positive Darwinian Selection
inferredcites →https://doi.org/10.1093/genetics/158.3.1227openalex-snapshot
Positive and Negative Selection on the Human Genome
inferredcites →https://doi.org/10.1093/genetics/16.2.97openalex-snapshot
EVOLUTION IN MENDELIAN POPULATIONS
inferredcites →https://doi.org/10.1093/genetics/160.2.765openalex-snapshot
Detecting a Local Signature of Genetic Hitchhiking Along a Recombining Chromosome
inferredcites →https://doi.org/10.1093/genetics/160.3.1179openalex-snapshot
The Signature of Positive Selection at Randomly Chosen Loci
inferredcites →https://doi.org/10.1093/genetics/162.4.2025openalex-snapshot
Approximate Bayesian Computation in Population Genetics
inferredcites →https://doi.org/10.1093/genetics/164.4.1369openalex-snapshot
A Survey of Chromosomal and Nucleotide Sequence Variation inDrosophila miranda
inferredcites →https://doi.org/10.1093/molbev/msg147openalex-snapshot
Estimating the Distribution of Selection Coefficients from Phylogenetic Data with Applications to Mitochondrial and Viral DNA
inferredcites →https://doi.org/10.1093/molbev/msh134openalex-snapshot
The Genomic Rate of Adaptive Amino Acid Substitution in Drosophila
inferredcites →https://doi.org/10.1093/molbev/msk025openalex-snapshot
The Rate of Adaptive Evolution in Enteric Bacteria
inferredcites →https://doi.org/10.1093/molbev/msm273openalex-snapshot
Inferring Selection in Partially Sequenced Regions
inferredcites →https://doi.org/10.1093/molbev/msp119openalex-snapshot
Estimating the Rate of Adaptive Molecular Evolution in the Presence of Slightly Deleterious Mutations and Population Size Change
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040046openalex-snapshot
Analysis of a genetic hitchhiking model, and its application to DNA polymorphism data from Drosophila melanogaster.
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040305openalex-snapshot
Rare variant alleles in the light of the neutral theory.
inferredcites →https://doi.org/10.1101/gr.4252305openalex-snapshot
Genomic scans for selective sweeps using SNP data
inferredcites →https://doi.org/10.1101/gr.6691007openalex-snapshot
Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome
inferredcites →https://doi.org/10.1111/j.0014-3820.2001.tb00732.xopenalex-snapshot
IS THE POPULATION SIZE OF A SPECIES RELEVANT TO ITS EVOLUTION?
inferredcites →https://doi.org/10.1111/j.0014-3820.2004.tb01722.xopenalex-snapshot
ADAPTIVE EVOLUTION OF ASEXUAL POPULATIONS UNDER MULLER'S RATCHET
inferredcites →https://doi.org/10.1186/1471-2148-8-334openalex-snapshot
Similar rates of protein adaptation in Drosophila miranda and D. melanogaster, two species with different current effective population sizes
inferredcites →https://doi.org/10.1186/1471-2156-10-35openalex-snapshot
Automating approximate Bayesian computation by local linear regression
inferredcites →https://doi.org/10.1371/journal.pbio.1000082openalex-snapshot
Accelerated Adaptive Evolution on a Newly Formed X Chromosome
inferredcites →https://doi.org/10.1371/journal.pgen.0020166openalex-snapshot
Inferring the Demographic History and Rate of Adaptive Substitution in Drosophila
inferredcites →https://doi.org/10.1371/journal.pgen.1000198openalex-snapshot
An Approximate Bayesian Estimator Suggests Strong, Recurrent Selective Sweeps in Drosophila
inferredcites →https://doi.org/10.1371/journal.pgen.1000495openalex-snapshot
Pervasive Natural Selection in the Drosophila Genome?
inferredcites →https://doi.org/10.1371/journal.pgen.1000695openalex-snapshot
Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data
inferredcites →https://doi.org/10.1371/journal.pgen.1000825openalex-snapshot
Evidence for Pervasive Adaptive Protein Evolution in Wild Mice
inferredcites →https://doi.org/10.1371/journal.pgen.1001302openalex-snapshot
Pervasive Adaptive Protein Evolution Apparent in Diversity Patterns around Amino Acid Substitutions in Drosophila simulans
inferredcites →https://doi.org/10.1534/genetics.103.025387openalex-snapshot
Linkage Disequilibrium as a Signature of Selective Sweeps
inferredcites →https://doi.org/10.1534/genetics.104.026500openalex-snapshot
The HKA Test Revisited
inferredcites →https://doi.org/10.1534/genetics.104.038224openalex-snapshot
Distinguishing Between Selective Sweeps and Demography Using DNA Polymorphism Data
inferredcites →https://doi.org/10.1534/genetics.105.047217openalex-snapshot
Estimating Selection on Nonsynonymous Mutations
inferredcites →https://doi.org/10.1534/genetics.105.050179openalex-snapshot
The Hitchhiking Effect on Linkage Disequilibrium Between Linked Neutral Loci
inferredcites →https://doi.org/10.1534/genetics.106.062760openalex-snapshot
Selection, Recombination and Demographic History in Drosophila miranda
inferredcites →https://doi.org/10.1534/genetics.106.069450openalex-snapshot
On the Utility of Linkage Disequilibrium as a Statistic for Identifying Targets of Positive Selection in Nonequilibrium Populations
inferredcites →https://doi.org/10.1534/genetics.107.080226openalex-snapshot
Genomewide Spatial Correspondence Between Nonsynonymous Divergence and Neutral Polymorphism Reveals Extensive Adaptation in Drosophila
inferredcites →https://doi.org/10.1534/genetics.110.117614openalex-snapshot
Estimating the Parameters of Selection on Nonsynonymous Mutations inDrosophila pseudoobscuraandD. miranda

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Nonadaptive Genetic Change in Human and Primate Evolution
inferred← citeshttps://doi.org/10.1002/ece3.1249openalex-snapshot
Effective population size does not predict codon usage bias in mammals
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Molecular population genetics of Sex-lethal ( Sxl ) in the Drosophila melanogaster species group: a locus that genetically interacts with Wolbachia pipientis in Drosophila melanogaster
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The Effect of Variation in the Effective Population Size on the Rate of Adaptive Molecular Evolution in Eukaryotes
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Analysis of Five Gene Sets in Chimpanzees Suggests Decoupling between the Action of Selection on Protein-Coding and on Noncoding Elements
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Recombining without Hotspots: A Comprehensive Evolutionary Portrait of Recombination in Two Closely Related Species of Drosophila
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Weak Polygenic Selection Drives the Rapid Adaptation of the Chemosensory System: Lessons from the Upstream Regions of the Major Gene Families
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Determinants of the Efficacy of Natural Selection on Coding and Noncoding Variability in Two Passerine Species
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Dissecting the Effects of Selection and Mutation on Genetic Diversity in Three Wood White (Leptidea) Butterfly Species
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Adaptive Introgression across Semipermeable Species Boundaries between Local Helicoverpa zea and Invasive Helicoverpa armigera Moths
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Recombination Suppression Drives Expansion of the Drosophila Dot Chromosome
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Pleiotropy Modulates the Efficacy of Selection inDrosophila melanogaster
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Paternally Expressed Imprinted Genes under Positive Darwinian Selection in Arabidopsis thaliana
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Substantial deceleration of adaptation of HIV-1 within 1500 generations in an experimental evolution: a genomic perspective
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Additional file 1 of Population genomics of Vibrionaceae isolated from an endangered oasis reveals local adaptation after an environmental perturbation
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