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Comparative Genomics of Taphrina Fungi Causing Varying Degrees of Tumorous Deformity in Plants

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1006/jmbi.2000.4315openalex-snapshot

Predicting transmembrane protein topology with a hidden markov model: application to complete genomes11Edited by F. Cohen

inferredcites →https://doi.org/10.1007/s003440010037openalex-snapshot

Gibberellin Biosynthesis in Plants and Fungi: A Case of Convergent Evolution?

inferredcites →https://doi.org/10.1007/s10327-010-0262-1openalex-snapshot

Overwintering of Taphrina wiesneri within cherry shoots monitored with species-specific PCR

inferredcites →https://doi.org/10.1016/0048-4059(75)90069-7openalex-snapshot

Increased levels of cytokinin and indoleacetic acid in peach leaves infected with Taphrina deformans

inferredcites →https://doi.org/10.1016/j.bbalip.2009.04.002openalex-snapshot

PAT proteins, an ancient family of lipid droplet proteins that regulate cellular lipid stores

inferredcites →https://doi.org/10.1016/j.cub.2010.04.027openalex-snapshot

Rapid Expansion and Functional Divergence of Subtelomeric Gene Families in Yeasts

inferredcites →https://doi.org/10.1016/j.cub.2011.02.045openalex-snapshot

Two-Component Systems and Their Co-Option for Eukaryotic Signal Transduction

inferredcites →https://doi.org/10.1016/j.mib.2009.09.005openalex-snapshot

Fungal meiosis and parasexual reproduction—lessons from pathogenic yeast

inferredcites →https://doi.org/10.1016/j.ympev.2012.08.023openalex-snapshot

MITOS: Improved de novo metazoan mitochondrial genome annotation

inferredcites →https://doi.org/10.1016/s0014-5793(98)01467-7openalex-snapshot

The complete sequence of the mitochondrial genome of Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1016/s0021-9258(19)81068-2openalex-snapshot

Codon selection in yeast.

inferredcites →https://doi.org/10.1016/s0378-1097(01)00424-4openalex-snapshot

MHYT, a new integral membrane sensor domain

inferredcites →https://doi.org/10.1038/nmeth.1701openalex-snapshot

SignalP 4.0: discriminating signal peptides from transmembrane regions

inferredcites →https://doi.org/10.1038/nprot.2012.016openalex-snapshot

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

inferredcites →https://doi.org/10.1038/nprot.2012.068openalex-snapshot

A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs

inferredcites →https://doi.org/10.1073/pnas.1108434108openalex-snapshot

The main auxin biosynthesis pathway in Arabidopsis

inferredcites →https://doi.org/10.1074/jbc.m609592200openalex-snapshot

The Metarhizium anisopliae Perilipin Homolog MPL1 Regulates Lipid Metabolism, Appressorial Turgor Pressure, and Virulence

inferredcites →https://doi.org/10.1089/ars.2010.3345openalex-snapshot

Two-Component Mediated Peroxide Sensing and Signal Transduction in Fission Yeast

inferredcites →https://doi.org/10.1093/aob/mci083openalex-snapshot

Auxin: Regulation, Action, and Interaction

inferredcites →https://doi.org/10.1093/bioinformatics/bth397openalex-snapshot

DAGchainer: a tool for mining segmental genome duplications and synteny

inferredcites →https://doi.org/10.1093/bioinformatics/bti263openalex-snapshot

ProtTest: selection of best-fit models of protein evolution

inferredcites →https://doi.org/10.1093/bioinformatics/btl446openalex-snapshot

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

inferredcites →https://doi.org/10.1093/bioinformatics/btm071openalex-snapshot

CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes

inferredcites →https://doi.org/10.1093/bioinformatics/btn529openalex-snapshot

Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database

inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot

The Sequence Alignment/Map format and SAMtools

inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot

BEDTools: a flexible suite of utilities for comparing genomic features

inferredcites →https://doi.org/10.1093/bioinformatics/btq461openalex-snapshot

Search and clustering orders of magnitude faster than BLAST

inferredcites →https://doi.org/10.1093/bioinformatics/btt476openalex-snapshot

The MaSuRCA genome assembler

inferredcites →https://doi.org/10.1093/molbev/msn221openalex-snapshot

Phylogenomic Analyses Support the Monophyly of Taphrinomycotina, including Schizosaccharomyces Fission Yeasts

inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

inferredcites →https://doi.org/10.1093/nar/30.1.276openalex-snapshot

The Pfam Protein Families Database

inferredcites →https://doi.org/10.1093/nar/gkg134openalex-snapshot

A comparison of three fission yeast mitochondrial genomes

inferredcites →https://doi.org/10.1093/nar/gkj089openalex-snapshot

MEROPS: the peptidase database

inferredcites →https://doi.org/10.1093/nar/gkn663openalex-snapshot

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

inferredcites →https://doi.org/10.1093/nar/gkq1268openalex-snapshot

RATT: Rapid Annotation Transfer Tool

inferredcites →https://doi.org/10.1093/nar/gkr1065openalex-snapshot

The Pfam protein families database

inferredcites →https://doi.org/10.1093/nar/gkr853openalex-snapshot

PomBase: a comprehensive online resource for fission yeast

inferredcites →https://doi.org/10.1093/nar/gks479openalex-snapshot

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

inferredcites →https://doi.org/10.1093/nar/gkt371openalex-snapshot

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach

inferredcites →https://doi.org/10.1099/ijs.0.02437-0openalex-snapshot

Molecular systematics of the dimorphic ascomycete genus Taphrina

inferredcites →https://doi.org/10.1101/gr.074492.107openalex-snapshot

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

inferredcites →https://doi.org/10.1101/gr.092759.109openalex-snapshot

Circos: An information aesthetic for comparative genomics

inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

inferredcites →https://doi.org/10.1101/gr.1224503openalex-snapshot

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

inferredcites →https://doi.org/10.1101/gr.229202openalex-snapshot

BLAT —The BLAST -Like Alignment Tool

inferredcites →https://doi.org/10.1111/j.1364-3703.2008.00470.xopenalex-snapshot

Indole‐3‐acetic acid (IAA) biosynthesis in the smut fungus Ustilago maydis and its relevance for increased IAA levels in infected tissue and host tumour formation

inferredcites →https://doi.org/10.1111/j.1365-313x.2008.03455.xopenalex-snapshot

Arabidopsis PCFS4, a homologue of yeast polyadenylation factor Pcf11p, regulates FCA alternative processing and promotes flowering time

inferredcites →https://doi.org/10.1111/j.1574-6968.2008.01173.xopenalex-snapshot

Dimorphism in fungal plant pathogens

inferredcites →https://doi.org/10.1126/science.1195330openalex-snapshot

Pathogenicity Determinants in Smut Fungi Revealed by Genome Comparison

inferredcites →https://doi.org/10.1126/science.1203357openalex-snapshot

Comparative Functional Genomics of the Fission Yeasts

inferredcites →https://doi.org/10.1128/aem.02919-05openalex-snapshot

Identification of an Abscisic Acid Gene Cluster in the Grey Mold Botrytis cinerea

inferredcites →https://doi.org/10.1128/mbio.00055-13openalex-snapshot

Genome Sequencing of the Plant Pathogen Taphrina deformans , the Causal Agent of Peach Leaf Curl

inferredcites →https://doi.org/10.1139/b74-207openalex-snapshot

Cytokinin production by the fungi Taphrina cerasi and T. deformans

inferredcites →https://doi.org/10.1186/1471-2105-11-345openalex-snapshot

SOPRA: Scaffolding algorithm for paired reads via statistical optimization

inferredcites →https://doi.org/10.1186/1471-2105-13-s4-s14openalex-snapshot

Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms

inferredcites →https://doi.org/10.1186/1471-2164-14-274openalex-snapshot

Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi

inferredcites →https://doi.org/10.1186/gb-2004-5-2-r12openalex-snapshot

Versatile and open software for comparing large genomes

inferredcites →https://doi.org/10.1186/gb-2006-7-s1-s11openalex-snapshot

AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome

inferredcites →https://doi.org/10.1186/gb-2010-11-4-r41openalex-snapshot

Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps

inferredcites →https://doi.org/10.1186/gb-2012-13-6-r56openalex-snapshot

Toward almost closed genomes with GapFiller

inferredcites →https://doi.org/10.1186/gb-2013-14-4-r36openalex-snapshot

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

inferredcites →https://doi.org/10.1186/gb-2013-14-5-r47openalex-snapshot

REAPR: a universal tool for genome assembly evaluation

inferredcites →https://doi.org/10.1242/dev.01924openalex-snapshot

An allelic series reveals essential roles for FY in plant development in addition to flowering-time control

inferredcites →https://doi.org/10.1371/journal.pgen.1000556openalex-snapshot

General Rules for Optimal Codon Choice

inferredcites →https://doi.org/10.1371/journal.ppat.1003022openalex-snapshot

Aneuploidy and Drug Resistance in Pathogenic Fungi

inferredcites →https://doi.org/10.5962/bhl.part.16125openalex-snapshot

A monograph of the genus Taphrina

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3897/imafungus.16.140572zenodo-depositor-declared

The six whole mitochondrial genomes for the Diaporthe species: features, evolution and phylogeny

inferred← citeshttps://doi.org/10.3897/imafungus.17.187200zenodo-depositor-declared

Phylogenetic analysis of the genus Taphrina: proposal of one new genus and seven new species (Taphrinales, Taphrinomycetes) from China

inferred← citeshttps://doi.org/10.1002/jobm.202200463openalex-snapshot

Transcriptome analysis of Armillaria gallica 012 m in response to auxin

inferred← citeshttps://doi.org/10.1007/978-3-031-81770-0_35openalex-snapshot

Taphrina

inferred← citeshttps://doi.org/10.1007/978-3-319-61575-2_7openalex-snapshot

Parasitism in Yeasts

inferred← citeshttps://doi.org/10.1007/978-3-319-62683-3_6openalex-snapshot

Phylloplane Yeasts in Temperate Climates

inferred← citeshttps://doi.org/10.1007/s00425-020-03375-5openalex-snapshot

Plant tumors: a hundred years of study

inferred← citeshttps://doi.org/10.1007/s10342-025-01768-3openalex-snapshot

Landscape-scale variation in the canopy mycobiome in temperate beech and spruce forest stands explained by leaf water content and elevation

inferred← citeshttps://doi.org/10.1007/s10681-022-03130-9openalex-snapshot

Inheritance for resistance to leaf curl [Taphrina deformans (Berk.) Tul.] in peach cultivars estimated by exploring mixed models

inferred← citeshttps://doi.org/10.1016/b978-0-12-822429-8.00013-3openalex-snapshot

Diseases caused by fungi

inferred← citeshttps://doi.org/10.1016/b978-0-443-18694-3.00003-1openalex-snapshot

Witches’ broom disease of birch

inferred← citeshttps://doi.org/10.1016/b978-0-443-29137-1.00015-3openalex-snapshot

Sweet Cherry

inferred← citeshttps://doi.org/10.1016/j.ab.2014.12.001openalex-snapshot

Increased transcriptome sequencing efficiency with modified Mint-2 digestion–ligation protocol

inferred← citeshttps://doi.org/10.1016/j.csbj.2022.03.016openalex-snapshot

Comparative mitochondrial genome analyses reveal conserved gene arrangement but massive expansion/contraction in two closely related Exserohilum pathogens

inferred← citeshttps://doi.org/10.1016/j.meegid.2018.08.015openalex-snapshot

Genomics and evolution of Pneumocystis species

inferred← citeshttps://doi.org/10.1038/s41598-025-16496-2openalex-snapshot

Common garden experiments suggest terpene-mediated associations between phyllosphere microbes and Japanese cedar

inferred← citeshttps://doi.org/10.1038/s42003-021-01799-7openalex-snapshot

Genomic insights into the host specific adaptation of the Pneumocystis genus

inferred← citeshttps://doi.org/10.1093/femsec/fiaa056openalex-snapshot

The response of soil and phyllosphere microbial communities to repeated application of the fungicide iprodione: accelerated biodegradation or toxicity?

inferred← citeshttps://doi.org/10.1093/femsyr/fov066openalex-snapshot

Candida glabrata : new tools and technologies—expanding the toolkit

inferred← citeshttps://doi.org/10.1093/gbe/evaa268openalex-snapshot

Step-by-Step Evolution of Telomeres: Lessons from Yeasts

inferred← citeshttps://doi.org/10.1094/phytofr-02-23-0012-ropenalex-snapshot

Grapevine Leaf Epiphytic Fungal and Bacterial Communities Are Influenced More by Spatial and Temporal Factors than by Powdery Mildew Fungicide Spray Programs

inferred← citeshttps://doi.org/10.1101/2021.09.16.460675openalex-snapshot

A Taphrina strain infecting the model plant Arabidopsis thaliana

inferred← citeshttps://doi.org/10.1101/2025.05.04.652152openalex-snapshot

Common garden experiments suggest terpene-mediated interactions between phyllosphere microbes and Cryptomeria japonica

inferred← citeshttps://doi.org/10.1101/594028openalex-snapshot

A novel phyllosphere resident Protomyces species that interacts with the Arabidopsis immune system

inferred← citeshttps://doi.org/10.1111/1462-2920.16037openalex-snapshot

Distinct Taphrina strains from the phyllosphere of birch exhibiting a range of witches' broom disease symptoms

inferred← citeshttps://doi.org/10.1111/1758-2229.70048openalex-snapshot

Distinct microbial communities associated with health‐relevant wild berries

inferred← citeshttps://doi.org/10.1111/1758-2229.70118openalex-snapshot

A Novel Pathosystem With the Model Plant Arabidopsis thaliana for Defining the Molecular Basis of Taphrina Infections

inferred← citeshttps://doi.org/10.1111/1758-2229.70228openalex-snapshot

Ecological Modules Link Soil Aggregate Stability, Chemical Properties and Fungal Communities Under Plant Species‐Based Revegetation

inferred← citeshttps://doi.org/10.1111/mpp.12899openalex-snapshot

Extensive chromosomal rearrangements and rapid evolution of novel effector superfamilies contribute to host adaptation and speciation in the basal ascomycetous fungi

inferred← citeshttps://doi.org/10.1111/mpp.70299openalex-snapshot

Exploring Taphrina deformans , the Springtime Scourge of Peach

inferred← citeshttps://doi.org/10.1111/pce.12942openalex-snapshot

Unravelling early events in the Taphrina deformans– Prunus persica interaction: an insight into the differential responses in resistant and susceptible genotypes

inferred← citeshttps://doi.org/10.1111/ppa.70244openalex-snapshot

Micromorphology of Naked Asci and Yeast Cells of Taphrina wiesneri on Prunus × yedoensis Leaves

inferred← citeshttps://doi.org/10.1111/tpj.15135openalex-snapshot

Hormones as go‐betweens in plant microbiome assembly

inferred← citeshttps://doi.org/10.1128/cmr.00009-18openalex-snapshot

A Molecular Window into the Biology and Epidemiology of Pneumocystis spp

inferred← citeshttps://doi.org/10.1128/mra.01255-19openalex-snapshot

Draft Genome Sequence of the Birch Tree Fungal Pathogen Taphrina betulina UCD315

inferred← citeshttps://doi.org/10.1146/annurev-cellbio-102314-112502openalex-snapshot

Modulation of Host Cell Biology by Plant Pathogenic Microbes

inferred← citeshttps://doi.org/10.1186/s12864-016-2917-6openalex-snapshot

Gene family expansions and contractions are associated with host range in plant pathogens of the genus Colletotrichum

inferred← citeshttps://doi.org/10.1186/s43008-024-00149-6openalex-snapshot

The complete mitochondrial genomes of five critical phytopathogenic Bipolaris species: features, evolution, and phylogeny

inferred← citeshttps://doi.org/10.3389/fmicb.2026.1918765openalex-snapshot

Culturable yeasts associated to different life stages of the farmed red seaweed Porphyra dioica

inferred← citeshttps://doi.org/10.3389/fpls.2024.1429890openalex-snapshot

Computational proteomics analysis of Taphrina deformans for the identification of antifungal drug targets and validation with commercial fungicides

inferred← citeshttps://doi.org/10.3390/horticulturae10040326openalex-snapshot

Distribution of Plasmopara viticola Causing Downy Mildew in Russian Far East Grapevines

inferred← citeshttps://doi.org/10.3390/jof12050361openalex-snapshot

Functional Characterization of OTU Domain-Containing Deubiquitinases from Plant Pathogenic Fungi Reveals Distinct Immune Modulatory Mechanisms

inferred← citeshttps://doi.org/10.3390/jof7100864openalex-snapshot

Genome Comparisons of the Fission Yeasts Reveal Ancient Collinear Loci Maintained by Natural Selection

inferred← citeshttps://doi.org/10.3390/microorganisms8030456openalex-snapshot

Fungal Microbiota of Sea Buckthorn Berries at Two Ripening Stages and Volatile Profiling of Potential Biocontrol Yeasts

inferred← citeshttps://doi.org/10.3390/plants13060861openalex-snapshot

Insights into the Transcriptional Reprogramming of Peach Leaves Inoculated with Taphrina deformans

inferred← citeshttps://doi.org/10.3852/14-157openalex-snapshot

Detection of phytohormones in temperate forest fungi predicts consistent abscisic acid production and a common pathway for cytokinin biosynthesis

inferred← citeshttps://doi.org/10.4005/jjfs.97.153openalex-snapshot

New Insights to Develop Studies on Witch's Broom Caused by Taphrina wiesneri

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