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A novel phyllosphere resident Protomyces species that interacts with the Arabidopsis immune system

https://doi.org/10.1101/594028
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Preparation of Yeast DNA
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Histidine kinases mediate differentiation, stress response, and pathogenicity in Magnaporthe oryzae
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Biodiversity and Ecophysiology of Yeasts
inferredcites →https://doi.org/10.1007/3-540-30985-3_13openalex-snapshot
Phylloplane Yeasts
inferredcites →https://doi.org/10.1007/978-0-585-34046-3_6openalex-snapshot
Fungal Diversity and Phylogeny with Emphasis on 18S Ribosomal DNA Sequence Divergence
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Distribution of carotenoids and sterols in relation to the taxonomy of Taphrina and Protomyces
inferredcites →https://doi.org/10.1007/bf00403654openalex-snapshot
Conidiation and carbohydrate composition in some Candida and Torulopsis species
inferredcites →https://doi.org/10.1007/s12374-014-0430-5openalex-snapshot
Non-proteinaceous yeast extract induces arabidopsis defense responses independently of salicylic acid
inferredcites →https://doi.org/10.1007/s13225-017-0386-0openalex-snapshot
Notes for genera: Ascomycota
inferredcites →https://doi.org/10.1016/b978-0-444-52149-1.00060-4openalex-snapshot
Protomyces Unger (1833)
inferredcites →https://doi.org/10.1016/b978-0-444-52149-1.00073-2openalex-snapshot
Taphrina
inferredcites →https://doi.org/10.1016/j.ab.2014.12.001openalex-snapshot
Increased transcriptome sequencing efficiency with modified Mint-2 digestion–ligation protocol
inferredcites →https://doi.org/10.1016/j.cub.2007.09.025openalex-snapshot
Salicylic Acid Inhibits Pathogen Growth in Plants through Repression of the Auxin Signaling Pathway
inferredcites →https://doi.org/10.1016/j.immuni.2010.05.001openalex-snapshot
Dectin-2 Recognition of α-Mannans and Induction of Th17 Cell Differentiation Is Essential for Host Defense against Candida albicans
inferredcites →https://doi.org/10.1016/j.micres.2006.04.001openalex-snapshot
Screening of free-living rhizospheric bacteria for their multiple plant growth promoting activities
inferredcites →https://doi.org/10.1016/j.molp.2016.04.001openalex-snapshot
Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation
inferredcites →https://doi.org/10.1016/j.tplants.2006.12.003openalex-snapshot
Phylloplane proteins: emerging defenses at the aerial frontline?
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FASconCAT: Convenient handling of data matrices
inferredcites →https://doi.org/10.1016/s0007-1536(62)80018-7openalex-snapshot
Studies on the life-history and taxonomic position of Protomyces inundatus dangeard
inferredcites →https://doi.org/10.1016/s1567-1356(03)00226-5openalex-snapshot
Characterisation and classification of phylloplane yeasts from Portugal related to the genus and description of five novel species
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Metabolic footprint of epiphytic bacteria on Arabidopsis thaliana leaves
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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
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Innovation and constraint leading to complex multicellularity in the Ascomycota
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SignalP 4.0: discriminating signal peptides from transmembrane regions
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Fast gapped-read alignment with Bowtie 2
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Plant immunity: towards an integrated view of plant–pathogen interactions
inferredcites →https://doi.org/10.1038/nrm3047openalex-snapshot
The MRE11 complex: starting from the ends
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Bacterial competition: surviving and thriving in the microbial jungle
inferredcites →https://doi.org/10.1038/nrmicro2910openalex-snapshot
Microbial life in the phyllosphere
inferredcites →https://doi.org/10.1038/s41588-017-0012-9openalex-snapshot
Genomic features of bacterial adaptation to plants
inferredcites →https://doi.org/10.1038/s41598-017-09644-wopenalex-snapshot
Fungal lifestyle reflected in serine protease repertoire
inferredcites →https://doi.org/10.1038/srep39403openalex-snapshot
The isolation and characterization of resident yeasts from the phylloplane of Arabidopsis thaliana
inferredcites →https://doi.org/10.1073/pnas.1603941113openalex-snapshot
Comparative genomics of biotechnologically important yeasts
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Surface signaling in pathogenesis.
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Cloning of Cutinase Transcription Factor 1, a Transactivating Protein Containing Cys6Zn2 Binuclear Cluster DNA-binding Motif
inferredcites →https://doi.org/10.1074/jbc.275.11.7462openalex-snapshot
A Protein Conjugation System in Yeast with Homology to Biosynthetic Enzyme Reaction of Prokaryotes
inferredcites →https://doi.org/10.1074/jbc.m512258200openalex-snapshot
Structures of the Carbohydrate Recognition Domain of Ca2+-independent Cargo Receptors Emp46p and Emp47p
inferredcites →https://doi.org/10.1074/jbc.m703064200openalex-snapshot
Structural Basis for Recognition of High Mannose Type Glycoproteins by Mammalian Transport Lectin VIP36
inferredcites →https://doi.org/10.1074/jbc.ra117.000178openalex-snapshot
Diverse NADase effector families mediate interbacterial antagonism via the type VI secretion system
inferredcites →https://doi.org/10.1080/03601234.2017.1292093openalex-snapshot
Impact of three different fungicides on fungal epi- and endophytic communities of common bean (Phaseolus vulgaris) and broad bean (Vicia faba)
inferredcites →https://doi.org/10.1080/15572536.2006.11832628openalex-snapshot
Early diverging Ascomycota: phylogenetic divergence and related evolutionary enigmas
inferredcites →https://doi.org/10.1080/15592324.2015.1048052openalex-snapshot
Indole-3-acetic acid: A widespread physiological code in interactions of fungi with other organisms
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SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1091/mbc.7.3.483openalex-snapshot
ERGIC-53 is a functional mannose-selective and calcium-dependent human homologue of leguminous lectins.
inferredcites →https://doi.org/10.1091/mbc.e03-02-0079openalex-snapshot
Urmylation: A Ubiquitin-like Pathway that Functions during Invasive Growth and Budding in Yeast
inferredcites →https://doi.org/10.1093/bioinformatics/btm071openalex-snapshot
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
inferredcites →https://doi.org/10.1093/bioinformatics/btn013openalex-snapshot
Using native and syntenically mapped cDNA alignments to improve de novo gene finding
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btr623openalex-snapshot
BadiRate: estimating family turnover rates by likelihood-based methods
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btv351openalex-snapshot
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
inferredcites →https://doi.org/10.1093/gbe/evu067openalex-snapshot
Comparative Genomics of Taphrina Fungi Causing Varying Degrees of Tumorous Deformity in Plants
inferredcites →https://doi.org/10.1093/gbe/evu148openalex-snapshot
Gene Loss Rather Than Gene Gain Is Associated with a Host Jump from Monocots to Dicots in the Smut Fungus Melanopsichium pennsylvanicum
inferredcites →https://doi.org/10.1093/jxb/erx327openalex-snapshot
The intimate talk between plants and microorganisms at the leaf surface
inferredcites →https://doi.org/10.1093/jxb/erx447openalex-snapshot
The roles of auxin during interactions between bacterial plant pathogens and their hosts
inferredcites →https://doi.org/10.1093/nar/25.17.3389openalex-snapshot
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
inferredcites →https://doi.org/10.1093/nar/gkg770openalex-snapshot
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
inferredcites →https://doi.org/10.1093/nar/gks479openalex-snapshot
dbCAN: a web resource for automated carbohydrate-active enzyme annotation
inferredcites →https://doi.org/10.1093/nar/gkv1344openalex-snapshot
The Pfam protein families database: towards a more sustainable future
inferredcites →https://doi.org/10.1093/nar/gkv318openalex-snapshot
GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters
inferredcites →https://doi.org/10.1093/nar/gkv487openalex-snapshot
OrthoVenn: a web server for genome wide comparison and annotation of orthologous clusters across multiple species
inferredcites →https://doi.org/10.1093/nar/gkw1089openalex-snapshot
PHI-base: a new interface and further additions for the multi-species pathogen–host interactions database
inferredcites →https://doi.org/10.1093/nar/gkw290openalex-snapshot
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
inferredcites →https://doi.org/10.1094/mpmi-19-1138openalex-snapshot
Yeast Increases Resistance in Arabidopsis Against Pseudomonas syringae and Botrytis cinerea by Salicylic Acid-Dependent as Well as -Independent Mechanisms
inferredcites →https://doi.org/10.1094/mpmi-20-5-0589openalex-snapshot
The MAP Kinase Kinase MKK2 Affects Disease Resistance inArabidopsis
inferredcites →https://doi.org/10.1099/ijs.0.02437-0openalex-snapshot
Molecular systematics of the dimorphic ascomycete genus Taphrina
inferredcites →https://doi.org/10.1101/181198openalex-snapshot
Plant genetic effects on microbial hubs impact fitness across field trials
inferredcites →https://doi.org/10.1104/pp.108.130369openalex-snapshot
Trichoderma virens , a Plant Beneficial Fungus, Enhances Biomass Production and Promotes Lateral Root Growth through an Auxin-Dependent Mechanism in Arabidopsis
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The SPS amino acid sensor mediates nutrient acquisition and immune evasion inCandida albicans
inferredcites →https://doi.org/10.1111/evo.12169openalex-snapshot
EVOLUTION OF HABITAT PREFERENCE AND NUTRITION MODE IN A COSMOPOLITAN FUNGAL GENUS WITH EVIDENCE OF INTERKINGDOM HOST JUMPS AND MAJOR SHIFTS IN ECOLOGY
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Indole‐3‐acetic acid (IAA) biosynthesis in the smut fungus Ustilago maydis and its relevance for increased IAA levels in infected tissue and host tumour formation
inferredcites →https://doi.org/10.1111/j.1365-2958.2011.07908.xopenalex-snapshot
Identification of a galactose‐specific flocculin essential for non‐sexual flocculation and filamentous growth in Schizosaccharomyces pombe
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Cellulases, hemicelluloses and auxin‐stimulated growth: a possible relationship
inferredcites →https://doi.org/10.1111/j.1462-5822.2009.01318.xopenalex-snapshot
Host responses to a versatile commensal: PAMPs and PRRs interplay leading to tolerance or infection byCandida albicans
inferredcites →https://doi.org/10.1111/mmi.12911openalex-snapshot
Hybrid histidine kinases in pathogenic fungi
inferredcites →https://doi.org/10.1111/mpp.12393openalex-snapshot
Plant hormones: a fungal point of view
inferredcites →https://doi.org/10.1126/science.1126088openalex-snapshot
A Plant miRNA Contributes to Antibacterial Resistance by Repressing Auxin Signaling
inferredcites →https://doi.org/10.1128/aem.60.12.4468-4477.1994openalex-snapshot
Coexistence among Epiphytic Bacterial Populations Mediated through Nutritional Resource Partitioning
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A critical examination of the specificity of the salkowski reagent for indolic compounds produced by phytopathogenic bacteria
inferredcites →https://doi.org/10.1128/aem.69.4.1875-1883.2003openalex-snapshot
Microbiology of the Phyllosphere
inferredcites →https://doi.org/10.1128/jb.00798-10openalex-snapshot
Interbacterial Macromolecular Transfer by the Campylobacter fetus subsp. venerealis Type IV Secretion System
inferredcites →https://doi.org/10.1128/mbio.00055-13openalex-snapshot
Genome Sequencing of the Plant Pathogen Taphrina deformans , the Causal Agent of Peach Leaf Curl
inferredcites →https://doi.org/10.1128/mbio.01739-16openalex-snapshot
The Identification of Phytohormone Receptor Homologs in Early Diverging Fungi Suggests a Role for Plant Sensing in Land Colonization by Fungi
inferredcites →https://doi.org/10.1146/annurev-genet-120215-034952openalex-snapshot
The Plant Microbiota: Systems-Level Insights and Perspectives
inferredcites →https://doi.org/10.1146/annurev-phyto-080614-120106openalex-snapshot
Function, Discovery, and Exploitation of Plant Pattern Recognition Receptors for Broad-Spectrum Disease Resistance
inferredcites →https://doi.org/10.1186/1471-2164-14-274openalex-snapshot
Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi
inferredcites →https://doi.org/10.1186/gb-2007-8-2-r19openalex-snapshot
qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data
inferredcites →https://doi.org/10.1186/gb-2013-14-4-r36openalex-snapshot
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
inferredcites →https://doi.org/10.1186/s13059-015-0721-2openalex-snapshot
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
inferredcites →https://doi.org/10.1186/s43008-021-00054-2openalex-snapshot
A novel Arabidopsis phyllosphere resident Protomyces species and a re-examination of genus Protomyces based on genome sequence data
inferredcites →https://doi.org/10.1271/bbb.68.1489openalex-snapshot
Genetic Analysis ofchs1+andchs2+Encoding Chitin Synthases fromSchizosaccharomyces pombe
inferredcites →https://doi.org/10.1371/journal.pbio.1002352openalex-snapshot
Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation
inferredcites →https://doi.org/10.1371/journal.pbio.2002860openalex-snapshot
Genome-wide identification of bacterial plant colonization genes
inferredcites →https://doi.org/10.1371/journal.pgen.1003104openalex-snapshot
Deciphering the Transcriptional-Regulatory Network of Flocculation in Schizosaccharomyces pombe
inferredcites →https://doi.org/10.1371/journal.pone.0029707openalex-snapshot
Roles of Candida albicans Gat2, a GATA-Type Zinc Finger Transcription Factor, in Biofilm Formation, Filamentous Growth and Virulence
inferredcites →https://doi.org/10.1371/journal.pone.0114196openalex-snapshot
Indole-3-Acetic Acid-Producing Yeasts in the Phyllosphere of the Carnivorous Plant Drosera indica L
inferredcites →https://doi.org/10.1371/journal.ppat.1003305openalex-snapshot
Genetic Control of Conventional and Pheromone-Stimulated Biofilm Formation in Candida albicans
inferredcites →https://doi.org/10.1371/journal.ppat.1003769openalex-snapshot
LysM Effectors: Secreted Proteins Supporting Fungal Life
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Multifunctional Roles of Plant Cuticle During Plant-Pathogen Interactions
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A monograph of the genus Taphrina
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Comparative morphology and biology of the fungi, mycetozoa and bacteria
inferredcites →https://doi.org/10.5962/p.413958openalex-snapshot
A Taxonomic Revision of the Protomycetales
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The enveomics collection: a toolbox for specialized analyses of microbial genomes and metagenomes

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-981-33-4508-9_11openalex-snapshot
Phyllosphere Microbiome: Plant Defense Strategies
inferred← citeshttps://doi.org/10.1101/2021.09.16.460675openalex-snapshot
A Taphrina strain infecting the model plant Arabidopsis thaliana
inferred← citeshttps://doi.org/10.1111/1462-2920.16037openalex-snapshot
Distinct Taphrina strains from the phyllosphere of birch exhibiting a range of witches' broom disease symptoms
inferred← citeshttps://doi.org/10.1111/1758-2229.70118openalex-snapshot
A Novel Pathosystem With the Model Plant Arabidopsis thaliana for Defining the Molecular Basis of Taphrina Infections
inferred← citeshttps://doi.org/10.1186/s43008-021-00054-2openalex-snapshot
A novel Arabidopsis phyllosphere resident Protomyces species and a re-examination of genus Protomyces based on genome sequence data
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