On the public citation graph

Accuracy of Rate Estimation Using Relaxed-Clock Models with a Critical Focus on the Early Metazoan Radiation

https://doi.org/10.1093/molbev/msi125
0 signed · 209 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-1-4615-5419-6_9openalex-snapshot
Estimating Rate and Time in Molecular Phylogenies: Beyond the Molecular Clock?
inferredcites →https://doi.org/10.1007/bf02101694openalex-snapshot
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
inferredcites →https://doi.org/10.1007/s002399910034openalex-snapshot
The Power of Relative Rates Tests Depends on the Data
inferredcites →https://doi.org/10.1016/b978-1-4832-3210-2.50006-6openalex-snapshot
Mammalian Protein Metabolism
inferredcites →https://doi.org/10.1016/b978-1-4832-3211-9.50009-7openalex-snapshot
Evolution of Protein Molecules
inferredcites →https://doi.org/10.1073/pnas.95.21.12386openalex-snapshot
Testing the Cambrian explosion hypothesis by using a molecular dating technique
inferredcites →https://doi.org/10.1080/10635150290102375openalex-snapshot
Effects of Models of Rate Evolution on Estimation of Divergence Dates with Special Reference to the Metazoan 18S Ribosomal RNA Phylogeny
inferredcites →https://doi.org/10.1080/10635150290102456openalex-snapshot
Divergence Time and Evolutionary Rate Estimation with Multilocus Data
inferredcites →https://doi.org/10.1080/10635150390235557openalex-snapshot
Comparison of Likelihood and Bayesian Methods for Estimating Divergence Times Using Multiple Gene Loci and Calibration Points, with Application to a Radiation of Cute-Looking Mouse Lemur Species
inferredcites →https://doi.org/10.1080/10635150490423458openalex-snapshot
Unraveling the Evolutionary Radiation of the Thoracican Barnacles Using Molecular and Morphological Evidence: A Comparison of Several Divergence Time Estimation Approaches
inferredcites →https://doi.org/10.1093/bioinformatics/13.3.235openalex-snapshot
Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
inferredcites →https://doi.org/10.1093/bioinformatics/13.5.555openalex-snapshot
PAML: a program package for phylogenetic analysis by maximum likelihood
inferredcites →https://doi.org/10.1093/bioinformatics/16.4.395openalex-snapshot
Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/17.8.754openalex-snapshot
MRBAYES: Bayesian inference of phylogenetic trees
inferredcites →https://doi.org/10.1093/bioinformatics/19.2.301openalex-snapshot
r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock
inferredcites →https://doi.org/10.1093/genetics/154.4.1879openalex-snapshot
A Compound Poisson Process for Relaxing the Molecular Clock
inferredcites →https://doi.org/10.1093/genetics/161.3.1307openalex-snapshot
Estimating Mutation Parameters, Population History and Genealogy Simultaneously From Temporally Spaced Sequence Data
inferredcites →https://doi.org/10.1093/molbev/msg226openalex-snapshot
Bayesian Models of Episodic Evolution Support a Late Precambrian Explosive Diversification of the Metazoa
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003811openalex-snapshot
Performance of a Divergence Time Estimation Method under a Probabilistic Model of Rate Evolution
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003974openalex-snapshot
Estimating Absolute Rates of Molecular Evolution and Divergence Times: A Penalized Likelihood Approach
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025731openalex-snapshot
A Nonparametric Approach to Estimating Divergence Times in the Absence of Rate Constancy
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025811openalex-snapshot
Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo Method
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025892openalex-snapshot
Estimating the rate of evolution of the rate of molecular evolution
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025940openalex-snapshot
Estimating divergence dates from molecular sequences
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026264openalex-snapshot
Estimating Divergence Times in the Presence of an Overdispersed Molecular Clock
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026389openalex-snapshot
Estimation of Primate Speciation Dates Using Local Molecular Clocks
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040259openalex-snapshot
Phylogenetic test of the molecular clock and linearized trees.
inferredcites →https://doi.org/10.1098/rspb.2000.1108openalex-snapshot
Can fast early rates reconcile molecular dates with the Cambrian explosion?
inferredcites →https://doi.org/10.1111/1467-9868.00353openalex-snapshot
Bayesian Measures of Model Complexity and Fit
inferredcites →https://doi.org/10.1126/science.275.5303.1109openalex-snapshot
Mass Survival of Birds Across the Cretaceous- Tertiary Boundary: Molecular Evidence

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3897/phytokeys.265.165998zenodo-depositor-declared
Phylogenetic analysis suggests early divergence followed by convergent morphological evolution in the Silene sections Odontopetalae and Sordidae (Caryophyllaceae)
inferred← citeshttps://doi.org/10.1002/ajb2.16108openalex-snapshot
No phylogenomic support for a Cenozoic origin of the “living fossil” Isoetes
inferred← citeshttps://doi.org/10.1002/gj.1074openalex-snapshot
Phylochronology of early metazoans: combined evidence from molecular and fossil data
inferred← citeshttps://doi.org/10.1007/1-4020-5202-2_7openalex-snapshot
Molecular Timescale of Evolution in the Proterozoic
inferred← citeshttps://doi.org/10.1007/978-0-387-45083-4_2openalex-snapshot
Dating Methods and Corresponding Chronometers in Astrobiology
inferred← citeshttps://doi.org/10.1007/978-94-007-6304-3_18openalex-snapshot
Molecular Dating of Evolutionary Events
inferred← citeshttps://doi.org/10.1007/978-94-007-6326-5_18-1openalex-snapshot
Molecular Dating of Evolutionary Events
inferred← citeshttps://doi.org/10.1007/s11038-006-9086-6openalex-snapshot
2. Dating Methods and Corresponding Chronometers in Astrobiology
inferred← citeshttps://doi.org/10.1016/b978-0-08-095975-7.01206-7openalex-snapshot
The Molecular Clock
inferred← citeshttps://doi.org/10.1016/j.cretres.2020.104452openalex-snapshot
The description of Prototrichalus gen. nov. and three new species from Burmese amber supports a mid-Cretaceous origin of the Metriorrhynchini (Coleoptera, Lycidae)
inferred← citeshttps://doi.org/10.1016/j.cub.2013.07.055openalex-snapshot
Rates of Phenotypic and Genomic Evolution during the Cambrian Explosion
inferred← citeshttps://doi.org/10.1016/j.gene.2020.144510openalex-snapshot
Deep mitochondrial DNA phylogeographic divergence in the threatened aoudad Ammotragus lervia (Bovidae, Caprini)
inferred← citeshttps://doi.org/10.1016/j.meegid.2015.03.021openalex-snapshot
Epidemic history of major genotypes of hepatitis C virus in Uruguay
inferred← citeshttps://doi.org/10.1016/j.tplants.2005.09.010openalex-snapshot
Relaxed molecular clocks for dating historical plant dispersal events
inferred← citeshttps://doi.org/10.1016/j.tree.2005.02.007openalex-snapshot
Molecular dating when rates vary
inferred← citeshttps://doi.org/10.1016/j.tree.2013.07.007openalex-snapshot
Critiquing blind dating: the dangers of over-confident date estimates in comparative genomics
inferred← citeshttps://doi.org/10.1016/j.tree.2014.07.004openalex-snapshot
The changing face of the molecular evolutionary clock
inferred← citeshttps://doi.org/10.1016/j.ttbdis.2019.05.001openalex-snapshot
Geographic dispersal and genetic diversity of tick-borne phleboviruses (Phenuiviridae, Phlebovirus) as revealed by the analysis of L segment sequences
inferred← citeshttps://doi.org/10.1016/j.virusres.2021.198507openalex-snapshot
Genetic lineage characterization and spatiotemporal dynamics of classical insect-specific flaviviruses: outcomes and limitations
inferred← citeshttps://doi.org/10.1016/j.virusres.2022.198728openalex-snapshot
Insect-specific viruses in the Parvoviridae family: Genetic lineage characterization and spatiotemporal dynamics of the recently established Brevihamaparvovirus genus
inferred← citeshttps://doi.org/10.1016/j.ympev.2005.10.015openalex-snapshot
Phylogeography of Kauri Snails and their allies from Northland, New Zealand (Mollusca: Gastropoda: Rhytididae: Paryphantinae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2006.03.009openalex-snapshot
Phylogeny, historical biogeography, and patterns of diversification for Pinus (Pinaceae): Phylogenetic tests of fossil-based hypotheses
inferred← citeshttps://doi.org/10.1016/j.ympev.2006.05.003openalex-snapshot
Phylogeny of Chaetanthera (Asteraceae: Mutisieae) reveals both ancient and recent origins of the high elevation lineages
inferred← citeshttps://doi.org/10.1016/j.ympev.2006.06.005openalex-snapshot
Linking patterns and processes of species diversification in the cone flies Strobilomyia (Diptera: Anthomyiidae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2007.03.013openalex-snapshot
Phylogenetic placement and biogeography of the North American species of Valerianella (Valerianaceae: Dipsacales) based on chloroplast and nuclear DNA
inferred← citeshttps://doi.org/10.1016/j.ympev.2007.08.011openalex-snapshot
Relationships of Afroablepharus Greer, 1974 skinks from the Gulf of Guinea islands based on mitochondrial and nuclear DNA: Patterns of colonization and comments on taxonomy
inferred← citeshttps://doi.org/10.1016/j.ympev.2008.04.013openalex-snapshot
Bayesian estimation of post-Messinian divergence times in Balearic Island lizards
inferred← citeshttps://doi.org/10.1016/j.ympev.2008.06.004openalex-snapshot
Phylogenetic and biogeographic complexity of Magnoliaceae in the Northern Hemisphere inferred from three nuclear data sets
inferred← citeshttps://doi.org/10.1016/j.ympev.2013.08.003openalex-snapshot
Historical biogeography of Eastern Asian–Eastern North American disjunct Melaphidina aphids (Hemiptera: Aphididae: Eriosomatinae) on Rhus hosts (Anacardiaceae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2013.12.011openalex-snapshot
Phylogeography and genetic structure of two Patagonian shag species (Aves: Phalacrocoracidae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2014.05.032openalex-snapshot
The impact of calibration and clock-model choice on molecular estimates of divergence times
inferred← citeshttps://doi.org/10.1016/j.ympev.2016.09.003openalex-snapshot
A 4000-species dataset provides new insight into the evolution of ferns
inferred← citeshttps://doi.org/10.1017/cbo9781139095112openalex-snapshot
Bayesian Evolutionary Analysis with BEAST
inferred← citeshttps://doi.org/10.1017/s0959270909008296openalex-snapshot
Phylogenetic relationships of gadfly petrels Pterodroma spp. from the Northeastern Atlantic Ocean: molecular evidence for specific status of Bugio and Cape Verde petrels and implications for conservation
inferred← citeshttps://doi.org/10.1038/s41559-021-01532-xopenalex-snapshot
Sustained high rates of morphological evolution during the rise of tetrapods
inferred← citeshttps://doi.org/10.1038/s41598-017-00786-5openalex-snapshot
Evolutionary history of the extant amphioxus lineage with shallow-branching diversification
inferred← citeshttps://doi.org/10.1073/pnas.0509585102openalex-snapshot
Placing confidence limits on the molecular age of the human–chimpanzee divergence
inferred← citeshttps://doi.org/10.1073/pnas.0706229104openalex-snapshot
The genetic basis of a plant–insect coevolutionary key innovation
inferred← citeshttps://doi.org/10.1073/pnas.0813376106openalex-snapshot
Rosid radiation and the rapid rise of angiosperm-dominated forests
inferred← citeshttps://doi.org/10.1073/pnas.1112487109openalex-snapshot
Vertebrate time-tree elucidates the biogeographic pattern of a major biotic change around the K–T boundary in Madagascar
inferred← citeshttps://doi.org/10.1080/10635150500234534openalex-snapshot
Asynchronous Colonization of Madagascar by the Four Endemic Clades of Primates, Tenrecs, Carnivores, and Rodents as Inferred from Nuclear Genes
inferred← citeshttps://doi.org/10.1080/10635150600812619openalex-snapshot
Dating Dispersal and Radiation in the Gymnosperm Gnetum (Gnetales)—Clock Calibration When Outgroup Relationships Are Uncertain
inferred← citeshttps://doi.org/10.1080/10635150701477825openalex-snapshot
Calibration Choice, Rate Smoothing, and the Pattern of Tetrapod Diversification According to the Long Nuclear Gene RAG-1
inferred← citeshttps://doi.org/10.1080/10635150801888871openalex-snapshot
Resolving an Ancient, Rapid Radiation in Saxifragales
inferred← citeshttps://doi.org/10.1080/17550870802331912openalex-snapshot
Temporal patterns of evolution in the Arctic explored inArtemisiaL. (Asteraceae) lineages of different age
inferred← citeshttps://doi.org/10.1080/23818107.2019.1684360openalex-snapshot
A comprehensive, genus-level time-calibrated phylogeny of the tree flora of Mediterranean Europe and an assessment of its vulnerability
inferred← citeshttps://doi.org/10.1086/704354openalex-snapshot
Allopatric Speciation in Asia Contributed to the Diversity Anomaly between Eastern Asia and Eastern North America: Evidence from Anchored Phylogenomics ofStewartia(Theaceae)
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199549429.001.0001openalex-snapshot
Animal Evolution
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199549429.002.0003openalex-snapshot
Copyright Page
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199549429.002.0004openalex-snapshot
Foreword
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199549429.002.0007openalex-snapshot
Contributors
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199549429.002.0008openalex-snapshot
Introduction
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199549429.003.0001openalex-snapshot
The earliest fossil record of the animals and its significance
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199549429.003.0002openalex-snapshot
The Ediacaran emergence of bilaterians: congruence between the genetic and the geological fossil records
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199549429.003.0003openalex-snapshot
Genomic, phylogenetic, and cell biological insights into metazoan origins
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199549429.003.0004openalex-snapshot
The mouth, the anus, and the blastopore—open questions about questionable openings
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199549429.003.0005openalex-snapshot
Origins of metazoan body plans: the larval revolution
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199549429.003.0006openalex-snapshot
Assembling the spiralian tree of life
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199549429.003.0007openalex-snapshot
The evolution of nervous system centralization
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199549429.003.0008openalex-snapshot
The origins and evolution of the Ecdysozoa
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199549429.003.0009openalex-snapshot
Deciphering deuterostome phylogeny: molecular, morphological, and palaeontological perspectives
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199549429.003.0010openalex-snapshot
Molecular genetic insights into deuterostome evolution from the direct-developing hemichordateSaccoglossus kowalevskii
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199549429.003.0011openalex-snapshot
Invertebrate Problematica: kinds, causes, and solutions
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199549429.003.0012openalex-snapshot
Improvement of molecular phylogenetic inference and the phylogeny of Bilateria
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199549429.003.0013openalex-snapshot
Beyond linear sequence comparisons: the use of genome-level characters for phylogenetic reconstruction
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199549429.003.0014openalex-snapshot
The animal in the genome: comparative genomics and evolution
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199549429.003.0015openalex-snapshot
MicroRNAs and metazoan phylogeny: big trees from little genes
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199549429.003.0016openalex-snapshot
The evolution of developmental gene networks: lessons from comparative studies on holometabolous insects
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199549429.003.0017openalex-snapshot
Conserved developmental processes and the evolution of novel traits: wounds, embryos, veins, and butterfly eyespots
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199549429.003.0018openalex-snapshot
Reassembling animal evolution: a four-dimensional puzzle
inferred← citeshttps://doi.org/10.1093/aob/mcab118openalex-snapshot
Not that young: combining plastid phylogenomic, plate tectonic and fossil evidence indicates a Palaeogene diversification of Cycadaceae
inferred← citeshttps://doi.org/10.1093/gbe/evab251openalex-snapshot
Assessing Rapid Relaxed-Clock Methods for Phylogenomic Dating
inferred← citeshttps://doi.org/10.1093/gbe/evy125openalex-snapshot
Global Rate Variation in Bony Vertebrates
inferred← citeshttps://doi.org/10.1093/jme/tjad062openalex-snapshot
Shedding light on the controversial taxonomic status of Culicoides jamaicensis and Culicoides paolae (Diptera: Ceratopogonidae): an overseas trip among continents
inferred← citeshttps://doi.org/10.1093/molbev/msaa193openalex-snapshot
Additive Uncorrelated Relaxed Clock Models for the Dating of Genomic Epidemiology Phylogenies
inferred← citeshttps://doi.org/10.1093/molbev/msi225openalex-snapshot
Molecular Phylogeny and Divergence Times of Deuterostome Animals
inferred← citeshttps://doi.org/10.1093/molbev/msj024openalex-snapshot
Bayesian Estimation of Species Divergence Times Under a Molecular Clock Using Multiple Fossil Calibrations with Soft Bounds
inferred← citeshttps://doi.org/10.1093/molbev/msk012openalex-snapshot
Analysis of the Overdispersed Clock in the Short-Term Evolution of Hepatitis C Virus: Using the E1/E2 Gene Sequences to Infer Infection Dates in a Single Source Outbreak
inferred← citeshttps://doi.org/10.1093/molbev/msl039openalex-snapshot
Testing the Molecular Clock: Molecular and Paleontological Estimates of Divergence Times in the Echinoidea (Echinodermata)
inferred← citeshttps://doi.org/10.1093/molbev/msm193openalex-snapshot
A General Comparison of Relaxed Molecular Clock Models
inferred← citeshttps://doi.org/10.1093/molbev/msq014openalex-snapshot
Performance of Relaxed-Clock Methods in Estimating Evolutionary Divergence Times and Their Credibility Intervals
inferred← citeshttps://doi.org/10.1093/molbev/msq132openalex-snapshot
A Method to Correct for the Effects of Purifying Selection on Genealogical Inference
inferred← citeshttps://doi.org/10.1093/molbev/msr228openalex-snapshot
Relaxed Clocks and Inferences of Heterogeneous Patterns of Nucleotide Substitution and Divergence Time Estimates across Whales and Dolphins (Mammalia: Cetacea)
inferred← citeshttps://doi.org/10.1093/molbev/mst027openalex-snapshot
Y Chromosome Analysis of Dingoes and Southeast Asian Village Dogs Suggests a Neolithic Continental Expansion from Southeast Asia Followed by Multiple Austronesian Dispersals
inferred← citeshttps://doi.org/10.1093/sysbio/syad055openalex-snapshot
Evaluating the Accuracy of Methods for Detecting Correlated Rates of Molecular and Morphological Evolution
inferred← citeshttps://doi.org/10.1093/sysbio/syp028openalex-snapshot
Time Dependency of Molecular Rates in Ancient DNA Data Sets, A Sampling Artifact?
inferred← citeshttps://doi.org/10.1093/sysbio/syp035openalex-snapshot
Accounting for Calibration Uncertainty in Phylogenetic Estimation of Evolutionary Divergence Times
inferred← citeshttps://doi.org/10.1093/sysbio/syp082openalex-snapshot
Bayesian Dating of Shallow Phylogenies with a Relaxed Clock
inferred← citeshttps://doi.org/10.1093/sysbio/sys074openalex-snapshot
Phylogenomic Insights into the Cambrian Explosion, the Colonization of Land and the Evolution of Flight in Arthropoda
inferred← citeshttps://doi.org/10.1093/sysbio/syt072openalex-snapshot
Molecular Dating, Evolutionary Rates, and the Age of the Grasses
inferred← citeshttps://doi.org/10.1093/sysbio/syv115openalex-snapshot
Geomolecular Dating and the Origin of Placental Mammals
inferred← citeshttps://doi.org/10.1093/sysbio/syw086openalex-snapshot
Evaluating the Impact of Genomic Data and Priors on Bayesian Estimates of the Angiosperm Evolutionary Timescale
inferred← citeshttps://doi.org/10.1093/sysbio/syw095openalex-snapshot
The Impact of the Tree Prior on Molecular Dating of Data Sets Containing a Mixture of Inter- and Intraspecies Sampling
inferred← citeshttps://doi.org/10.1093/sysbio/syy001openalex-snapshot
Using Phylogenomic Data to Explore the Effects of Relaxed Clocks and Calibration Strategies on Divergence Time Estimation: Primates as a Test Case
inferred← citeshttps://doi.org/10.1093/sysbio/syy072openalex-snapshot
Sex-Biased Dispersal Obscures Species Boundaries in Integrative Species Delimitation Approaches
inferred← citeshttps://doi.org/10.1093/ve/vez009openalex-snapshot
Identifying the patterns and drivers of Puumala hantavirus enzootic dynamics using reservoir sampling
inferred← citeshttps://doi.org/10.1093/zoolinnean/zlz005openalex-snapshot
A molecular and morphometric assessment of the systematics of the Macropus complex clarifies the tempo and mode of kangaroo evolution
inferred← citeshttps://doi.org/10.1098/rsbl.2008.0729openalex-snapshot
An examination of phylogenetic models of substitution rate variation among lineages
inferred← citeshttps://doi.org/10.1098/rspb.2006.3560openalex-snapshot
The distribution of species diversity across a flora's component lineages: dating the Cape's ‘relicts’
inferred← citeshttps://doi.org/10.1098/rstb.2006.1845openalex-snapshot
The origin and diversification of eukaryotes: problems with molecular phylogenetics and molecular clock estimation
inferred← citeshttps://doi.org/10.1098/rstb.2007.2246openalex-snapshot
Deciphering deuterostome phylogeny: molecular, morphological and palaeontological perspectives
inferred← citeshttps://doi.org/10.1098/rstb.2015.0046openalex-snapshot
Molecular clocks and the early evolution of metazoan nervous systems
inferred← citeshttps://doi.org/10.1099/vir.0.027011-0openalex-snapshot
Complete nucleotide sequence and evolutionary analysis of a Gorilla foamy virus
inferred← citeshttps://doi.org/10.1099/vir.0.038950-0openalex-snapshot
Global phylogeography and evolution of chelonid fibropapilloma-associated herpesvirus
inferred← citeshttps://doi.org/10.1101/2024.02.24.581872openalex-snapshot
Pandemic Risk Assessment for a Swine Influenza A Virus in Comparative Human Substrates
inferred← citeshttps://doi.org/10.1111/1755-0998.12320openalex-snapshot
Simulating and detecting autocorrelation of molecular evolutionary rates among lineages
inferred← citeshttps://doi.org/10.1111/1755-0998.12352openalex-snapshot
Tree imbalance causes a bias in phylogenetic estimation of evolutionary timescales using heterochronous sequences
inferred← citeshttps://doi.org/10.1111/2041-210x.14128openalex-snapshot
E vo P hylo : An r package for pre‐ and postprocessing of morphological data from relaxed clock Bayesian phylogenetics
inferred← citeshttps://doi.org/10.1111/2041-210x.14404openalex-snapshot
Chronospaces: An R package for the statistical exploration of divergence times promotes the assessment of methodological sensitivity
inferred← citeshttps://doi.org/10.1111/aen.12018openalex-snapshot
The insect molecular clock
inferred← citeshttps://doi.org/10.1111/brv.12390openalex-snapshot
Bayesian molecular dating: opening up the black box
inferred← citeshttps://doi.org/10.1111/ddi.13179openalex-snapshot
Phylogenetic diversity metrics from molecular phylogenies: modelling expected degree of error under realistic rate variation
inferred← citeshttps://doi.org/10.1111/evo.14036openalex-snapshot
Heterogeneity in the rate of molecular sequence evolution substantially impacts the accuracy of detecting shifts in diversification rates
inferred← citeshttps://doi.org/10.1111/j.1095-8312.2007.00911.xopenalex-snapshot
Phylogeny of Australasian agamid lizards based on nuclear and mitochondrial genes: implications for morphological evolution and biogeography
inferred← citeshttps://doi.org/10.1111/j.1095-8339.2009.00948.xopenalex-snapshot
The origin of a mega-diverse genus: datingBegonia(Begoniaceae) using alternative datasets, calibrations and relaxed clock methods
inferred← citeshttps://doi.org/10.1111/j.1096-3642.2011.00786.xopenalex-snapshot
Molecular dating and diversification of the South American lizard genus Liolaemus (subgenus Eulaemus) based on nuclear and mitochondrial DNA sequences
inferred← citeshttps://doi.org/10.1111/j.1365-2699.2008.01935.xopenalex-snapshot
The origin and evolution of Indomalesian, Australasian and Pacific island biotas: insights from Aglaieae (Meliaceae, Sapindales)
inferred← citeshttps://doi.org/10.1111/j.1365-2699.2009.02190.xopenalex-snapshot
Molecular clocks keep dispersal hypotheses afloat: evidence for trans‐Atlantic rafting by rodents
inferred← citeshttps://doi.org/10.1111/j.1366-9516.2006.00210.xopenalex-snapshot
Molecular dating of phylogenetic trees: A brief review of current methods that estimate divergence times
inferred← citeshttps://doi.org/10.1111/j.1469-8137.2011.03861.xopenalex-snapshot
Phylogeographically concordant chloroplast DNA divergence in sympatric Nothofagus s.s. How deep can it be?
inferred← citeshttps://doi.org/10.1111/j.1529-8817.2008.00479.xopenalex-snapshot
TIMING DEEP DIVERGENCE EVENTS IN CALCAREOUS DINOFLAGELLATES1
inferred← citeshttps://doi.org/10.1111/j.1558-5646.2007.00070.xopenalex-snapshot
DRIFTING PROPAGULES AND RECEDING SWAMPS: GENETIC FOOTPRINTS OF MANGROVE RECOLONIZATION AND DISPERSAL ALONG TROPICAL COASTS
inferred← citeshttps://doi.org/10.1111/j.1558-5646.2007.00225.xopenalex-snapshot
A PHYLOGENETIC TEST FOR ADAPTIVE CONVERGENCE IN ROCK-DWELLING LIZARDS
inferred← citeshttps://doi.org/10.1111/j.1558-5646.2009.00728.xopenalex-snapshot
EXPLOSIVE RADIATION OR CRYPTIC MASS EXTINCTION? INTERPRETING SIGNATURES IN MOLECULAR PHYLOGENIES
inferred← citeshttps://doi.org/10.1111/j.1558-5646.2011.01558.xopenalex-snapshot
JOINT RECONSTRUCTION OF DIVERGENCE TIMES AND LIFE-HISTORY EVOLUTION IN PLACENTAL MAMMALS USING A PHYLOGENETIC COVARIANCE MODEL
inferred← citeshttps://doi.org/10.1111/j.1759-6831.2009.00053.xopenalex-snapshot
A fossil‐calibrated relaxed clock for Ephedra indicates an Oligocene age for the divergence of Asian and New World clades and Miocene dispersal into South America
inferred← citeshttps://doi.org/10.1111/jeb.12123openalex-snapshot
Rivers, refuges and population divergence of fire‐eye antbirds (Pyriglena) in the Amazon Basin
inferred← citeshttps://doi.org/10.1111/mec.12953openalex-snapshot
Molecular‐clock methods for estimating evolutionary rates and timescales
inferred← citeshttps://doi.org/10.1111/zoj.12105openalex-snapshot
Phylogeography and diversity of the terrestrial isopodSpherillo grossus(Oniscidea: Armadillidae) on the Australian East Coast
inferred← citeshttps://doi.org/10.1128/jvi.01926-07openalex-snapshot
Evidence of the Recombinant Origin of a Bat Severe Acute Respiratory Syndrome (SARS)-Like Coronavirus and Its Implications on the Direct Ancestor of SARS Coronavirus
inferred← citeshttps://doi.org/10.1128/spectrum.01958-22openalex-snapshot
Genomic Epidemiology and Phylodynamic Analysis of Enterovirus A71 Reveal Its Transmission Dynamics in Asia
inferred← citeshttps://doi.org/10.1146/annurev.ecolsys.37.091305.110018openalex-snapshot
Incorporating Molecular Evolution into Phylogenetic Analysis, and a New Compilation of Conserved Polymerase Chain Reaction Primers for Animal Mitochondrial DNA
inferred← citeshttps://doi.org/10.1155/2008/683509openalex-snapshot
Phylogenetic Analyses: A Toolbox Expanding towards Bayesian Methods
inferred← citeshttps://doi.org/10.1155/2013/628467openalex-snapshot
Undersampling Taxa Will Underestimate Molecular Divergence Dates: An Example from the South American Lizard Clade Liolaemini
inferred← citeshttps://doi.org/10.11606/t.41.2011.tde-10052011-151851openalex-snapshot
Roedores e biomas neotropicais: estudos evolutivos e comparativos
inferred← citeshttps://doi.org/10.1163/1876312x-00002175openalex-snapshot
Three new species of Bathysciola Jeannel, 1910 (Leiodidae, Cholevinae, Leptodirini) from caves in Central Italy, comparing morphological taxonomy with molecular phylogeny
inferred← citeshttps://doi.org/10.1186/1471-2148-11-271openalex-snapshot
Rate variation and estimation of divergence times using strict and relaxed clocks
inferred← citeshttps://doi.org/10.1186/1471-2148-6-29openalex-snapshot
Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified
inferred← citeshttps://doi.org/10.1186/1471-2148-7-58openalex-snapshot
Phylogenetics of Cucumis (Cucurbitaceae): Cucumber (C. sativus) belongs in an Asian/Australian clade far from melon (C. melo)
inferred← citeshttps://doi.org/10.1186/1471-2148-7-95openalex-snapshot
The influence of body size and net diversification rate on molecular evolution during the radiation of animal phyla
inferred← citeshttps://doi.org/10.1186/1741-7007-6-54openalex-snapshot
Molecular phylogenetics reveal multiple tertiary vicariance origins of the African rain forest trees
inferred← citeshttps://doi.org/10.1186/1741-7007-6-6openalex-snapshot
Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages
inferred← citeshttps://doi.org/10.1186/s12862-019-1431-2openalex-snapshot
Global phylodynamic analysis of avian paramyxovirus-1 provides evidence of inter-host transmission and intercontinental spatial diffusion
inferred← citeshttps://doi.org/10.1186/s12862-020-01609-4openalex-snapshot
Improving the performance of Bayesian phylogenetic inference under relaxed clock models
inferred← citeshttps://doi.org/10.1186/s12864-022-09030-5openalex-snapshot
Assessing the relative performance of fast molecular dating methods for phylogenomic data
inferred← citeshttps://doi.org/10.1186/s12866-020-01905-5openalex-snapshot
A survey of RNA viruses in mosquitoes from Mozambique reveals novel genetic lineages of flaviviruses and phenuiviruses, as well as frequent flavivirus-like viral DNA forms in Mansonia
inferred← citeshttps://doi.org/10.12705/662.7openalex-snapshot
Different speciation types meet in a Mediterranean genus: The biogeographic history of Cymbalaria (Plantaginaceae)
inferred← citeshttps://doi.org/10.1371/annotation/c59c150a-0412-490a-8e7d-ae5622fd4434openalex-snapshot
Correction: Phylogenetic Analysis of Seven WRKY Genes across the Palm Subtribe Attaleinae (Arecaceae) Identifies Syagrus as Sister Group of the Coconut
inferred← citeshttps://doi.org/10.1371/journal.pbio.0040088openalex-snapshot
Relaxed Phylogenetics and Dating with Confidence
inferred← citeshttps://doi.org/10.1371/journal.pmed.1000198openalex-snapshot
The Global Spread of Hepatitis C Virus 1a and 1b: A Phylodynamic and Phylogeographic Analysis
inferred← citeshttps://doi.org/10.1371/journal.pntd.0010255openalex-snapshot
Molecular and genomic investigation of an urban outbreak of dengue virus serotype 2 in Angola, 2017–2019
inferred← citeshttps://doi.org/10.1371/journal.pone.0000879openalex-snapshot
Dating Phylogenies with Hybrid Local Molecular Clocks
inferred← citeshttps://doi.org/10.1371/journal.pone.0007353openalex-snapshot
Phylogenetic Analysis of Seven WRKY Genes across the Palm Subtribe Attaleinae (Arecaceae) Identifies Syagrus as Sister Group of the Coconut
inferred← citeshttps://doi.org/10.1371/journal.pone.0078110openalex-snapshot
Speciation on the Rocks: Integrated Systematics of the Heteronotia spelea Species Complex (Gekkota; Reptilia) from Western and Central Australia
inferred← citeshttps://doi.org/10.1371/journal.pone.0190826openalex-snapshot
A Kolmogorov-Smirnov test for the molecular clock based on Bayesian ensembles of phylogenies
inferred← citeshttps://doi.org/10.1371/journal.pone.0239809openalex-snapshot
Evolutionary dynamics and transmission patterns of Newcastle disease virus in China through Bayesian phylogeographical analysis
inferred← citeshttps://doi.org/10.1600/036364410790862542openalex-snapshot
Phylogenetic Systematics of Ipomopsis (Polemoniaceae): Relationships and Divergence Times Estimated from Chloroplast and Nuclear DNA Sequences
inferred← citeshttps://doi.org/10.21203/rs.3.rs-1805291/v1openalex-snapshot
Accessing the relative performance of fast molecular dating methods for phylogenomic data
inferred← citeshttps://doi.org/10.24072/pcjournal.556openalex-snapshot
Factors influencing the accuracy and precision in dating single gene trees
inferred← citeshttps://doi.org/10.26879/490openalex-snapshot
Four mammal fossil calibrations: balancing competing palaeontological and molecular considerations
inferred← citeshttps://doi.org/10.3109/10408361003633318openalex-snapshot
Use of phylogenetics in the molecular epidemiology and evolutionary studies of viral infections
inferred← citeshttps://doi.org/10.3109/19401736.2010.494727openalex-snapshot
Improved characterisation of among-lineage rate variation in cetacean mitogenomes using codon-partitioned relaxed clocks
inferred← citeshttps://doi.org/10.3389/fmicb.2021.711377openalex-snapshot
Genomic Diversity of the Ostreid Herpesvirus Type 1 Across Time and Location and Among Host Species
inferred← citeshttps://doi.org/10.3390/genes17010111openalex-snapshot
Mitochondrial DNA Variation of the Striped Hyena (Hyaena hyaena) in Algeria and Further Insights into the Species’ Evolutionary History
inferred← citeshttps://doi.org/10.3390/pathogens10101309openalex-snapshot
Human Polyomaviruses (HPyV) in Wastewater and Environmental Samples from the Lisbon Metropolitan Area: Detection and Genetic Characterization of Viral Structural Protein-Coding Sequences
inferred← citeshttps://doi.org/10.3390/v16040548openalex-snapshot
Pandemic Risk Assessment for Swine Influenza A Virus in Comparative In Vitro and In Vivo Models
inferred← citeshttps://doi.org/10.3390/v9100272openalex-snapshot
The Evolutionary History and Spatiotemporal Dynamics of the NC Lineage of Citrus Tristeza Virus
inferred← citeshttps://doi.org/10.5204/thesis.eprints.135716openalex-snapshot
Tracing the evolution of Australasian mammals: Integrating morphological, palaeontological and molecular data
inferred← citeshttps://doi.org/10.70675/bc6329d6z52d4z4863z8ab7zdc01ed926ae3openalex-snapshot
Taxonomic, phylogenetic and functional diversity in the Mediterranean region : congruence or divergence?
inferred← citeshttps://doi.org/10.7287/peerj.4404v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Phylogeny, time divergence, and historical biogeography of the South American Liolaemus alticolor-bibronii group (Iguania: Liolaemidae) (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.4404v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Phylogeny, time divergence, and historical biogeography of the South American Liolaemus alticolor-bibronii group (Iguania: Liolaemidae) (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.4404v0.2/reviews/1openalex-snapshot
Peer Review #1 of "Phylogeny, time divergence, and historical biogeography of the South American Liolaemus alticolor-bibronii group (Iguania: Liolaemidae) (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj.4404v0.2/reviews/2openalex-snapshot
Peer Review #2 of "Phylogeny, time divergence, and historical biogeography of the South American Liolaemus alticolor-bibronii group (Iguania: Liolaemidae) (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj.5140v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Local and relaxed clocks: the best of both worlds (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.5140v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Local and relaxed clocks: the best of both worlds (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.5140v0.1/reviews/3openalex-snapshot
Peer Review #3 of "Local and relaxed clocks: the best of both worlds (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.preprints.26744v1openalex-snapshot
Local and relaxed clocks, the best of both worlds
inferred← citeshttps://doi.org/10.7717/peerj.5140openalex-snapshot
Local and relaxed clocks: the best of both worlds
inferred← citeshttps://doi.org/10.7717/peerj.6334openalex-snapshot
The choice of tree prior and molecular clock does not substantially affect phylogenetic inferences of diversification rates
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.