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The Problem of Rooting Rapid Radiations

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Spectral analysis of phylogenetic data

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Mathematical Elegance with Biochemical Realism: The Covarion Model of Molecular Evolution

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Mammalian Protein Metabolism

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Evolution of Protein Molecules

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Genome-scale data, angiosperm relationships, and ‘ending incongruence’: a cautionary tale in phylogenetics

inferredcites →https://doi.org/10.1016/j.tplants.2005.03.006openalex-snapshot

The place of Amborella within the radiation of angiosperms

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Distributions of cherries for two models of trees

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Trees for bees

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Pika and vole mitochondrial genomes increase support for both rodent monophyly and glires

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Two new avian mitochondrial genomes (penguin and goose) and a summary of bird and reptile mitogenomic features

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Taxon sampling revisited

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Bias in Phylogenetic Estimation and Its Relevance to the Choice between Parsimony and Likelihood Methods

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Should We Use Model-Based Methods for Phylogenetic Inference When We Know That Assumptions About Among-Site Rate Variation and Nucleotide Substitution Pattern Are Violated?

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Outgroup Misplacement and Phylogenetic Inaccuracy Under a Molecular Clock--A Simulation Study

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Tracing the Decay of the Historical Signal in Biological Sequence Data

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Inferring Phylogenies.

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Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees

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Four New Avian Mitochondrial Genomes Help Get to Basic Evolutionary Questions in the Late Cretaceous

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The Opisthokonta and the Ecdysozoa May Not Be Clades: Stronger Support for the Grouping of Plant and Animal than for Animal and Fungi and Stronger Support for the Coelomata than Ecdysozoa

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Multigene Analyses of Bilaterian Animals Corroborate the Monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia

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Analysis of Acorus calamus Chloroplast Genome and Its Phylogenetic Implications

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The Bayesian "Star Paradox" Persists for Long Finite Sequences

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Phylogenetic analysis Of Dna sequences

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Testing the Theory of Descent

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Molecular Evolution and Phylogenetics

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Four New Mitochondrial Genomes and the Increased Stability of Evolutionary Trees of Mammals from Improved Taxon Sampling

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How often do wrong models produce better phylogenies?

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Topological bias and inconsistency of maximum likelihood using wrong models

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Accuracy of phylogenetic trees estimated from DNA sequence data.

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Relative Efficiencies of the Fitch-Margoliash, Maximum-Parsimony, Maximum-Likelihood, Minimum-Evolution, and Neighbor-joining Methods of Phylogenetic Tree Construction in Obtaining the Correct Tree

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Cases in which Parsimony or Compatibility Methods will be Positively Misleading

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Parsimony Can Be Consistent!

inferredcites →https://doi.org/10.1093/sysbio/45.4.596openalex-snapshot

Corrected Parsimony, Minimum Evolution, and Hadamard Conjugations

inferredcites →https://doi.org/10.1111/j.1096-0031.1998.tb00334.xopenalex-snapshot

Success of Parsimony in the Four-Taxon Case: Long-Branch Repulsion by Likelihood in the Farris Zone

inferredcites →https://doi.org/10.1111/j.1096-0031.2005.00059.xopenalex-snapshot

A review of long‐branch attraction

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Comparing Trees with Pendant Vertices Labelled

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Model Selection in Phylogenetics

inferredcites →https://doi.org/10.1186/1471-2148-4-35openalex-snapshot

Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots?

inferredcites →https://doi.org/10.1186/1471-2148-5-8openalex-snapshot

Bayesian and maximum likelihood phylogenetic analyses of protein sequence data under relative branch-length differences and model violation

inferredcites →https://doi.org/10.2307/2412923openalex-snapshot

Cases in which Parsimony or Compatibility Methods Will be Positively Misleading

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A Framework for the Quantitative Study of Evolutionary Trees

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