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VHICA, a New Method to Discriminate between Vertical and Horizontal Transposon Transfer: Application to the Mariner Family within Drosophila
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/978-3-540-35306-5_10openalex-snapshot
SeqinR 1.0-2: A Contributed Package to the R Project for Statistical Computing Devoted to Biological Sequences Retrieval and Analysis
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Chloroplast DNA codon use: Evidence for selection at the psb A locus based on tRNA availability
inferredcites →https://doi.org/10.1007/bf02407308openalex-snapshot
Unbiased estimation of the rates of synonymous and nonsynonymous substitution
inferredcites →https://doi.org/10.1007/s00239-001-0059-0openalex-snapshot
Codon Usage by Transposable Elements and Their Host Genes in Five Species
inferredcites →https://doi.org/10.1007/s00438-009-0468-0openalex-snapshot
Evolution of Tom, 297, 17.6 and rover retrotransposons in Drosophilidae species
inferredcites →https://doi.org/10.1007/s00438-011-0629-9openalex-snapshot
Vertical inheritance and bursts of transposition have shaped the evolution of the BS non-LTR retrotransposon in Drosophila
inferredcites →https://doi.org/10.1007/s00438-012-0691-yopenalex-snapshot
New Drosophila P-like elements and reclassification of Drosophila P-elements subfamilies
inferredcites →https://doi.org/10.1007/s10709-011-9552-6openalex-snapshot
The evolutionary history of mariner-like elements in Neotropical drosophilids
inferredcites →https://doi.org/10.1007/s10709-012-9648-7openalex-snapshot
The role of vertical and horizontal transfer in the evolution of Paris-like elements in drosophilid species
inferredcites →https://doi.org/10.1016/0168-9525(94)90012-4openalex-snapshot
The strange phylogenies of transposable elements: are horizontal transfers the only explanation?
inferredcites →https://doi.org/10.1016/0169-5347(94)90179-1openalex-snapshot
Transmission patterns of eukaryotic transposable elements: arguments for and against horizontal transfer
inferredcites →https://doi.org/10.1016/0378-1119(90)90491-9openalex-snapshot
The ‘effective number of codons’ used in a gene
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A Role for Codon Order in Translation Dynamics
inferredcites →https://doi.org/10.1016/j.tree.2010.06.001openalex-snapshot
Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution
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Increasing the data size to accurately reconstruct the phylogenetic relationships between nine subgroups of the Drosophila melanogaster species group (Drosophilidae, Diptera)
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Codon Usage Biases of Transposable Elements and Host Nuclear Genes in Arabidopsis Thaliana and Oryza Sativa
inferredcites →https://doi.org/10.1038/284601a0openalex-snapshot
Selfish genes, the phenotype paradigm and genome evolution
inferredcites →https://doi.org/10.1038/hdy.1994.185openalex-snapshot
The mariner transposable element in the Drosophilidae family
inferredcites →https://doi.org/10.1038/nature06341openalex-snapshot
Evolution of genes and genomes on the Drosophila phylogeny
inferredcites →https://doi.org/10.1038/ncomms4348openalex-snapshot
Population genomics supports baculoviruses as vectors of horizontal transfer of insect transposons
inferredcites →https://doi.org/10.1038/nmeth.2109openalex-snapshot
jModelTest 2: more models, new heuristics and parallel computing
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Revisiting horizontal transfer of transposable elements in Drosophila
inferredcites →https://doi.org/10.1073/pnas.81.21.6794openalex-snapshot
Sequences homologous to P elements occur in Drosophila paulistorum.
inferredcites →https://doi.org/10.1073/pnas.94.21.11428openalex-snapshot
A phylogenetic perspective on P transposable element evolution in Drosophila
inferredcites →https://doi.org/10.1093/bioinformatics/btu531openalex-snapshot
AliView: a fast and lightweight alignment viewer and editor for large datasets
inferredcites →https://doi.org/10.1093/bioinformatics/btv281openalex-snapshot
HTT-DB: Horizontally transferred transposable elements database
inferredcites →https://doi.org/10.1093/gbe/evs055openalex-snapshot
Horizontal Transposon Transfer in Eukarya: Detection, Bias, and Perspectives
inferredcites →https://doi.org/10.1093/gbe/evs130openalex-snapshot
Reconstructing the Evolutionary History of Transposable Elements
inferredcites →https://doi.org/10.1093/gbe/evu026openalex-snapshot
A New Genome-Wide Method to Track Horizontally Transferred Sequences: Application to Drosophila
inferredcites →https://doi.org/10.1093/genetics/124.2.339openalex-snapshot
Evidence for horizontal transmission of the P transposable element between Drosophila species.
inferredcites →https://doi.org/10.1093/genetics/136.3.927openalex-snapshot
Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy.
inferredcites →https://doi.org/10.1093/molbev/msq337openalex-snapshot
Population Genomics of Transposable Elements in Drosophila melanogaster
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026253openalex-snapshot
Horizontal Transfer and Selection in the Evolution of P Elements
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040191openalex-snapshot
Horizontal transmission, vertical inactivation, and stochastic loss of mariner-like transposable elements.
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040262openalex-snapshot
Recent horizontal transfer of a mariner transposable element among and between Diptera and Neuroptera.
inferredcites →https://doi.org/10.1093/sysbio/syq010openalex-snapshot
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
inferredcites →https://doi.org/10.1093/sysbio/sys029openalex-snapshot
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
inferredcites →https://doi.org/10.1101/gr.159384.113openalex-snapshot
Comparative validation of the D. melanogaster modENCODE transcriptome annotation
inferredcites →https://doi.org/10.1111/j.0014-3820.2001.tb01268.xopenalex-snapshot
PERSPECTIVE: TRANSPOSABLE ELEMENTS, PARASITIC DNA, AND GENOME EVOLUTION
inferredcites →https://doi.org/10.1111/j.1365-2583.2007.00787.xopenalex-snapshot
Multiple invasions of Errantivirus in the genus Drosophila
inferredcites →https://doi.org/10.1159/000084979openalex-snapshot
Repbase Update, a database of eukaryotic repetitive elements
inferredcites →https://doi.org/10.1163/187631208788784237openalex-snapshot
A supertree analysis and literature review of the genus Drosophila and closely related genera (Diptera, Drosophilidae)
inferredcites →https://doi.org/10.1186/1471-2148-7-226openalex-snapshot
Codon usage in twelve species of Drosophila
inferredcites →https://doi.org/10.1186/1471-2148-9-174openalex-snapshot
The evolutionary dynamics of the Helena retrotransposon revealed by sequenced Drosophila genomes
inferredcites →https://doi.org/10.1186/1471-2164-15-727openalex-snapshot
Genomic landscape and evolutionary dynamics of mariner transposable elements within the Drosophila genus
inferredcites →https://doi.org/10.1186/1745-6150-6-19openalex-snapshot
The struggle for life of the genome's selfish architects
inferredcites →https://doi.org/10.1186/1759-8753-5-4openalex-snapshot
Horizontal transfer of transposons between and within crustaceans and insects
inferredcites →https://doi.org/10.1186/gb-2009-10-2-r22openalex-snapshot
Widespread evidence for horizontal transfer of transposable elements across Drosophilagenomes
inferredcites →https://doi.org/10.1371/journal.pgen.1001128openalex-snapshot
Effect of Correlated tRNA Abundances on Translation Errors and Evolution of Codon Usage Bias
inferredcites →https://doi.org/10.1371/journal.pone.0022594openalex-snapshot
MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
inferredcites →https://doi.org/10.1371/journal.pone.0043111openalex-snapshot
Comparative Analysis of Codon Usage Bias and Codon Context Patterns between Dipteran and Hymenopteran Sequenced Genomes
inferredcites →https://doi.org/10.1534/genetics.104.031211openalex-snapshot
The First Steps of Transposable Elements Invasion
inferredcites →https://doi.org/10.21775/cimb.006.057openalex-snapshot
Factors that Affect the Horizontal Transfer of Transposable Elements
inferredcites →https://doi.org/10.5281/zenodo.10755318openalex-snapshot
Case 3407. Drosophila Fallen, 1832 (Insecta, Diptera): proposed conservation of usage.
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Horizontal Transfers and Transposable Elements
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The Ecology of Transposable Elements
inferred← citeshttps://doi.org/10.1002/ajb2.1709openalex-snapshot
Rare transposable elements challenge the prevailing view of transposition dynamics in plants
inferred← citeshttps://doi.org/10.1002/bies.201700177openalex-snapshot
Analyzing Horizontal Transfer of Transposable Elements on a Large Scale: Challenges and Prospects
inferred← citeshttps://doi.org/10.1007/978-3-030-52233-9_14openalex-snapshot
Horizontal Transfer of Transposons as Genomic Fossils of Host-Parasite Interactions
inferred← citeshttps://doi.org/10.1007/978-3-030-65317-0_7openalex-snapshot
Viruses Are Part of the Holobiont’s Fitness and Evolution
inferred← citeshttps://doi.org/10.1007/s00239-018-9868-2openalex-snapshot
An Analysis of IS630/Tc1/mariner Transposons in the Genome of a Pacific Oyster, Crassostrea gigas
inferred← citeshttps://doi.org/10.1007/s00438-020-01645-1openalex-snapshot
The Tc1-like elements with the spliceosomal introns in mollusk genomes
inferred← citeshttps://doi.org/10.1007/s00438-023-02063-9openalex-snapshot
Annotation of transposable elements in the transcriptome of the Neotropical brown stink bug Euschistus heros and its chromosomal distribution
inferred← citeshttps://doi.org/10.1007/s10577-019-09609-xopenalex-snapshot
The mobilome of Drosophila incompta, a flower-breeding species: comparison of transposable element landscapes among generalist and specialist flies
inferred← citeshttps://doi.org/10.1007/s10722-021-01331-0openalex-snapshot
Genetic diversity among queen bee, worker bees and larvae in terms of retrotransposon movements
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Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems
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Viruses as vectors of horizontal transfer of genetic material in eukaryotes
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Horizontal acquisition of transposable elements and viral sequences: patterns and consequences
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Foreign DNA acquisition by invertebrate genomes
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A Population Genetics Theory for piRNA-regulated Transposable Elements
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Phylogenomics of Ichneumonoidea (Hymenoptera) and implications for evolution of mode of parasitism and viral endogenization
inferred← citeshttps://doi.org/10.1016/j.ympev.2021.107090openalex-snapshot
A genomic survey of Tc1-mariner transposons in nematodes suggests extensive horizontal transposon transfer events
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Horizontal transfer of Buster transposons across multiple phyla and classes of animals
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Horizontal transfer and evolution of transposable elements in vertebrates
inferred← citeshttps://doi.org/10.1038/s41598-021-95843-5openalex-snapshot
Characterization of Mariner transposons in seven species of Rhus gall aphids
inferred← citeshttps://doi.org/10.1073/pnas.1524143113openalex-snapshot
Experimental evolution reveals hyperparasitic interactions among transposable elements
inferred← citeshttps://doi.org/10.1073/pnas.1621178114openalex-snapshot
Massive horizontal transfer of transposable elements in insects
inferred← citeshttps://doi.org/10.1073/pnas.2617602123openalex-snapshot
Lifestyles of Gypsy -family transposons shape their regulatory mechanisms
inferred← citeshttps://doi.org/10.1093/database/bax102openalex-snapshot
HTT-DB: new features and updates
inferred← citeshttps://doi.org/10.1093/gbe/evad068openalex-snapshot
Horizontal Transposon Transfer and Their Ecological Drivers: The Case of Flower-breeding Drosophila
inferred← citeshttps://doi.org/10.1093/gbe/evx122openalex-snapshot
Does the Promoter Constitute a Barrier in the Horizontal Transposon Transfer Process? Insight from Bari Transposons
inferred← citeshttps://doi.org/10.1093/gbe/evy184openalex-snapshot
Helena and BS: two travellers between the genera Drosophila and Zaprionus
inferred← citeshttps://doi.org/10.1093/gbe/evy220openalex-snapshot
Rapid Expansion of a Highly Germline-ExpressedMarinerElement Acquired by Horizontal Transfer in the Fire Ant Genome
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Species-Wide Transposable Element Repertoires Retrace the Evolutionary History of the Saccharomyces cerevisiae Host
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Positive Selection and Horizontal Gene Transfer in the Genome of a Male-Killing Wolbachia
inferred← citeshttps://doi.org/10.1093/molbev/msaf143openalex-snapshot
Spatiotemporal Tracking of Three Novel Transposable Element Invasions in Drosophila melanogaster over the Last 30 Years
inferred← citeshttps://doi.org/10.1093/molbev/msy184openalex-snapshot
Life History Traits Impact the Nuclear Rate of Substitution but Not the Mitochondrial Rate in Isopods
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Rapid evolution and horizontal gene transfer in the genome of a male-killing Wolbachia
inferred← citeshttps://doi.org/10.1101/2024.02.19.579948openalex-snapshot
Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems
inferred← citeshttps://doi.org/10.1101/656579openalex-snapshot
Why did the Tc1 -like elements of mollusks acquired the spliceosomal introns?
inferred← citeshttps://doi.org/10.1101/gr.280432.125openalex-snapshot
Phylogenetic relatedness rather than aquatic habitat fosters horizontal transfer of transposable elements in animals
inferred← citeshttps://doi.org/10.1111/imb.12577openalex-snapshot
Characterization of Herves ‐like transposable elements ( hAT s) in Drosophila species and their evolutionary scenario
inferred← citeshttps://doi.org/10.1111/mec.16685openalex-snapshot
Investigating bracovirus chromosomal integration and inheritance in lepidopteran host and nontarget species
inferred← citeshttps://doi.org/10.1126/science.ade0705openalex-snapshot
Virus-like transposons cross the species barrier and drive the evolution of genetic incompatibilities
inferred← citeshttps://doi.org/10.1134/s0026893323020231openalex-snapshot
The P-Element Has Not Significant Effect on the Drosophila simulans Viability
inferred← citeshttps://doi.org/10.1134/s1022795418010131openalex-snapshot
Search for Canonical P Element in Genomes of Drosophilinae Subfamily Species
inferred← citeshttps://doi.org/10.1134/s1022795419070123openalex-snapshot
leidyi Is a New Group of DD41D Transposons in Mnemiopsis leidyi Genome
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A Field Guide to Eukaryotic Transposable Elements
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Molecular and Chromosomal Evolution of DsTc1_5 and DsPogo_8 Elements (Tc1-Mariner) in Species of the Dichotomius Genus (Coleoptera: Scarabaeidae): Contributions to the Speciation Process
inferred← citeshttps://doi.org/10.1186/s12864-017-3856-6openalex-snapshot
Diversity and evolution of mariner-like elements in aphid genomes
inferred← citeshttps://doi.org/10.1186/s13100-017-0090-3openalex-snapshot
Evolutionary history of LTR-retrotransposons among 20 Drosophila species
inferred← citeshttps://doi.org/10.1186/s13100-018-0112-9openalex-snapshot
Genetic exchange in eukaryotes through horizontal transfer: connected by the mobilome
inferred← citeshttps://doi.org/10.1186/s13100-018-0123-6openalex-snapshot
Extensive exchange of transposable elements in the Drosophila pseudoobscura group
inferred← citeshttps://doi.org/10.1186/s13100-019-0184-1openalex-snapshot
High frequency of horizontal transfer in Jockey families (LINE order) of drosophilids
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Conceptual and Empirical Investigations of Eukaryotic Transposable Element Evolution
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Ecological networks to unravel the routes to horizontal transposon transfers
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Mosquito genomes are frequently invaded by transposable elements through horizontal transfer
inferred← citeshttps://doi.org/10.1371/journal.pone.0156014openalex-snapshot
Identification of Bari Transposons in 23 Sequenced Drosophila Genomes Reveals Novel Structural Variants, MITEs and Horizontal Transfer
inferred← citeshttps://doi.org/10.1371/journal.pone.0220539openalex-snapshot
Evolutionary history and classification of Micropia retroelements in Drosophilidae species
inferred← citeshttps://doi.org/10.1590/1678-4685-gmb-2023-0143openalex-snapshot
Horizontal transfer and the widespread presence of Galileo transposons in Drosophilidae (Insecta: Diptera)
inferred← citeshttps://doi.org/10.18699/vj19.581openalex-snapshot
Diversity of mariner-like elements in Orthoptera
inferred← citeshttps://doi.org/10.32614/cran.package.vhicaopenalex-snapshot
vhica: Vertical and Horizontal Inheritance Consistence Analysis
inferred← citeshttps://doi.org/10.3390/biology11050731openalex-snapshot
Closing the Gap: Horizontal Transfer of Mariner Transposons between Rhus Gall Aphids and Other Insects
inferred← citeshttps://doi.org/10.3390/cells10123590openalex-snapshot
Taming, Domestication and Exaptation: Trajectories of Transposable Elements in Genomes
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What Have We Learned in 30 Years of Investigations on Bari Transposons?
inferred← citeshttps://doi.org/10.3390/genes10050336openalex-snapshot
Birth, School, Work, Death, and Resurrection: The Life Stages and Dynamics of Transposable Element Proliferation
inferred← citeshttps://doi.org/10.3390/genes11020170openalex-snapshot
Homology-Free Detection of Transposable Elements Unveils Their Dynamics in Three Ecologically Distinct Rhodnius Species
inferred← citeshttps://doi.org/10.3390/genes12081223openalex-snapshot
Suggested Absence of Horizontal Transfer of Retrotransposons between Humans and Domestic Mammal Species
inferred← citeshttps://doi.org/10.3390/ijms24032610openalex-snapshot
Transposable Elements Co-Option in Genome Evolution and Gene Regulation
inferred← citeshttps://doi.org/10.64898/2026.02.25.703748openalex-snapshot
Taming the Genetic Fire: Transposable Element diversity across thermal environments in polychaetes
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Étude et implémentation d'une méthode de classification des organismes fondée sur le mosaïcisme génomique
inferred← citeshttps://doi.org/10.70675/107f1badz2604z41b8z8fbfz190bb4221fe3openalex-snapshot
Dynamics of Transposable Elements Under Regulation By piRNA
inferred← citeshttps://doi.org/10.70675/2e7be73bz95e1z44efza427z0a59d645b763openalex-snapshot
Étude des transferts horizontaux dans la réserve naturelle nationale de la forêt de la Massane par une approche de génomique des écosystèmes
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Origine des variations de taux d’évolution moléculaire inter-spécifiques : apport d’un modèle génomique en milieu souterrain
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Metabolism of the extracellular matrix in brown algae : from gene identification to biochemical characterization
inferred← citeshttps://doi.org/10.70675/d2b0d893zf3a6z4e39z9224z6c7032286283openalex-snapshot
Plasticité des génomes des pucerons des céréales et de leur plante hôte : recherche in silico et in vitro des éléments transposables des superfamilles Tc1-mariner-IS630 et piggyBac
inferred← citeshttps://doi.org/10.70675/de6a99a0z4d5cz4704za019zf06b17374134openalex-snapshot
Mechanisms and factors underlying horizontal transfers of genetic material between animals
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