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Pan-eukaryote ITS2 homologies revealed by RNA secondary structure

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1006/jipa.1997.4737openalex-snapshot

The Ribosomal RNA Gene Region ofNosema apis(Microspora): DNA Sequence for Small and Large Subunit rRNA Genes and Evidence of a Large Tandem Repeat Unit Size

inferredcites →https://doi.org/10.1006/jmbi.1995.0355openalex-snapshot

Evolutionarily Conserved Structural Elements are Critical for Processing of Internal Transcribed Spacer 2 fromSaccharomyces cerevisiaePrecursor Ribosomal RNA

inferredcites →https://doi.org/10.1006/mpev.2001.0968openalex-snapshot

Evolution and Alignment of the Hypervariable Arm 1 of Aeschynanthus (Gesneriaceae) ITS2 Nuclear Ribosomal DNA

inferredcites →https://doi.org/10.1007/978-94-011-4485-8openalex-snapshot

RNA Biochemistry and Biotechnology

inferredcites →https://doi.org/10.1007/978-94-011-4485-8_2openalex-snapshot

Algorithms and Thermodynamics for RNA Secondary Structure Prediction: A Practical Guide

inferredcites →https://doi.org/10.1007/pl00006143openalex-snapshot

The Internal Transcribed Spacer 2 Exhibits a Common Secondary Structure in Green Algae and Flowering Plants

inferredcites →https://doi.org/10.1007/pl00006398openalex-snapshot

Trematode and Monogenean rRNA ITS2 Secondary Structures Support a Four-Domain Model

inferredcites →https://doi.org/10.1007/pl00006449openalex-snapshot

Intraspecies Analysis: Comparison of ITS Sequence Data and Gene Intron Sequence Data with Breeding Data for a Worldwide Collection of Gonium pectorale

inferredcites →https://doi.org/10.1007/s00239-001-0006-0openalex-snapshot

Exploring the Phylogenetic Utility of ITS Sequences for Animals: A Test Case for Abalone (Haliotis)

inferredcites →https://doi.org/10.1007/s00239-004-0162-0openalex-snapshot

ITS-2 and 18S rRNA Gene Phylogeny of Aplysinidae (Verongida, Demospongiae)

inferredcites →https://doi.org/10.1016/0014-5793(93)81301-fopenalex-snapshot

Conserved secondary structures in the ITS2 of trematode pre‐rRNA

inferredcites →https://doi.org/10.1016/0092-8674(86)90505-2openalex-snapshot

Are rRNA sequence comparisons the Rosetta stone of phylogenetics?

inferredcites →https://doi.org/10.1016/1055-7903(92)90001-wopenalex-snapshot

Sequence and secondary structure comparisons of ITS rDNA in mosquitoes (Diptera: Culicidae)

inferredcites →https://doi.org/10.1016/j.meegid.2004.05.007openalex-snapshot

Internal transcribed spacers (ITS) of Trypanosoma rangeli ribosomal DNA (rDNA): a useful marker for inter-specific differentiation

inferredcites →https://doi.org/10.1016/j.ympev.2003.08.021openalex-snapshot

Characterization of angiosperm nrDNA polymorphism, paralogy, and pseudogenes

inferredcites →https://doi.org/10.1016/j.ympev.2006.08.013openalex-snapshot

Structural partitioning, paired-sites models and evolution of the ITS transcript in Syzygium and Myrtaceae

inferredcites →https://doi.org/10.1016/s0020-7519(99)00148-4openalex-snapshot

Sequence differences in the internal transcribed spacer ribosomal DNA among four species of hookworm (Ancylostomatoidea: Ancylostoma)1Note: Nucleotide sequence data reported in this paper are available in the EMBL, GenBank™ and DDJB databases under the GenBank accession numbers AJ001593-AJ001594,…

inferredcites →https://doi.org/10.1016/s0020-7519(99)00155-1openalex-snapshot

Secondary structure model for the ITS-2 precursor rRNA of strongyloid nematodes of equids: implications for phylogenetic inference1Note: Nucleotide sequences used in this paper are in GenBank™ under accession numbers AJ005832, AJ004835–AJ004847, AJ228236, X77807, X77808, X77863, X99345, Y08585,…

inferredcites →https://doi.org/10.1016/s0168-9525(03)00118-5openalex-snapshot

ITS2 is a double-edged tool for eukaryote evolutionary comparisons

inferredcites →https://doi.org/10.1016/s1055-7903(02)00227-0openalex-snapshot

ITS2 rRNA evolution and its congruence with the phylogeny of muricid neogastropods (Caenogastropoda, Muricoidea)

inferredcites →https://doi.org/10.1016/s1055-7903(03)00094-0openalex-snapshot

ITS secondary structure derived from comparative analysis: implications for sequence alignment and phylogeny of the Asteraceae

inferredcites →https://doi.org/10.1016/s1055-7903(03)00178-7openalex-snapshot

The advantages of the ITS2 region of the nuclear rDNA cistron for analysis of phylogenetic relationships of insects: a Drosophila example

inferredcites →https://doi.org/10.1016/s1055-7903(03)00208-2openalex-snapshot

Ribosomal ITS sequences and plant phylogenetic inference

inferredcites →https://doi.org/10.1017/cbo9780511721823openalex-snapshot

Evolution and Speciation of Island Plants

inferredcites →https://doi.org/10.1017/s096702620200361xopenalex-snapshot

A revised secondary structure model for the internal transcribed spacer 2 of the green algaeScenedesmusandDesmodesmusand its implication for the phylogeny of these algae

inferredcites →https://doi.org/10.1017/s1355838202023063openalex-snapshot

Dynamic conformational model for the role of ITS2 in pre-rRNA processing in yeast

inferredcites →https://doi.org/10.1038/sj.hdy.6800040openalex-snapshot

Evolution of the secondary structure of the rRNA internal transcribed spacer 2 (ITS2) in hard ticks (Ixodidae, Arthropoda)

inferredcites →https://doi.org/10.1046/j.1365-2583.2000.00223.xopenalex-snapshot

Sequence, secondary structure and phylogenetic analyses of the ribosomal internal transcribed spacer 2 (ITS2) in the Timarcha leaf beetles (Coleoptera: Chrysomelidae)

inferredcites →https://doi.org/10.1046/j.1365-294x.2003.02022.xopenalex-snapshot

Phylogeographical history of the spongeCrambe crambe(Porifera, Poecilosclerida): range expansion and recent invasion of the Macaronesian islands from the Mediterranean Sea

inferredcites →https://doi.org/10.1046/j.1440-1835.1999.47220157.xopenalex-snapshot

Little divergence in ribosomal DNA internal transcribed spacer ‐1 and ‐2 sequences among non‐digitate species of Laminaria (Phaeophyceae) from Hokkaido, Japan

inferredcites →https://doi.org/10.1046/j.1529-8817.2003.02145.xopenalex-snapshot

CLOSTERIUM MONILIFERUM‐EHRENBERGII(CHAROPHYCEAE, CHLOROPHYTA) SPECIES COMPLEX VIEWED FROM THE 1506 GROUP I INTRON AND ITS2 OF NUCLEAR rDNA

inferredcites →https://doi.org/10.1078/1434-4610-00002openalex-snapshot

The Significance of a Coincidence between Evolutionary Landmarks Found in Mating Affinity and a DNA Sequence

inferredcites →https://doi.org/10.1080/0269249x.2004.9705613openalex-snapshot

THE SECONDARY STRUCTURE OF THE ITS2 TRANSCRIPT INCYCLOTELLAANDSTEPHANODISCUS(THALASSIOSIRACEAE, BACILLARIOPHYTA)

inferredcites →https://doi.org/10.1086/419073openalex-snapshot

Concerted Evolution of Repetitive DNA Sequences in Eukaryotes

inferredcites →https://doi.org/10.1093/bioinformatics/bti550openalex-snapshot

MARNA: multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons

inferredcites →https://doi.org/10.1093/nar/26.15.3513openalex-snapshot

Microsporidian Encephalitozoon cuniculi, a unicellular eukaryote with an unusual chromosomal dispersion of ribosomal genes and a LSU rRNA reduced to the universal core

inferredcites →https://doi.org/10.1093/nar/27.11.2271openalex-snapshot

Evolutionarily conserved structural features in the ITS2 of mammalian pre-rRNAs and potential interactions with the snoRNA U8 detected by comparative analysis of new mouse sequences

inferredcites →https://doi.org/10.1093/nar/27.23.4533openalex-snapshot

Ribosomal internal transcribed spacer 2 (ITS2) exhibits a common core of secondary structure in vertebrates and yeast

inferredcites →https://doi.org/10.1093/nar/9.19.4847openalex-snapshot

The nucleotide sequence of the intergenic region between the 5.8S and 26S rRNA genes of the yeast ribosomal RNA operon. Possible implications for the interaction between 5.8S and 26S rRNA and the processing of the primary transcript

inferredcites →https://doi.org/10.1093/nar/gkh168openalex-snapshot

Secondary structure models of the nuclear internal transcribed spacer regions and 5.8S rRNA in Calciodinelloideae (Peridiniaceae) and other dinoflagellates

inferredcites →https://doi.org/10.1093/nar/gkl129openalex-snapshot

The internal transcribed spacer 2 database--a web server for (not only) low level phylogenetic analyses

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025693openalex-snapshot

Deep-level diagnostic value of the rDNA-ITS region

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025783openalex-snapshot

Variation in the ribosomal internal transcribed spacers and 5.8S rDNA among five species of Acropora (Cnidaria; Scleractinia): patterns of variation consistent with reticulate evolution

inferredcites →https://doi.org/10.1101/gr.5457707openalex-snapshot

Highly efficient concerted evolution in the ribosomal DNA repeats: Total rDNA repeat variation revealed by whole-genome shotgun sequence data

inferredcites →https://doi.org/10.1111/j.0022-3646.2005.04165.xopenalex-snapshot

MOLECULAR PHYLOGENY OF STAURASTRUM MEYEN EX RALFS AND RELATED GENERA (ZYGNEMATOPHYCEAE, STREPTOPHYTA) BASED ON CODING AND NONCODING RDNA SEQUENCE COMPARISONS1

inferredcites →https://doi.org/10.1111/j.1365-2583.1996.tb00052.xopenalex-snapshot

Sequence and secondary structure of the rDNA second internal transcribed spacer in the sibling species Culex pipiens L . and Cx. quinquefasciatus Say (Diptera: Culicidae)

inferredcites →https://doi.org/10.1111/j.1440-1835.1999.tb00286.xopenalex-snapshot

Little divergence in ribosomal DNA internal transcribed spacer -1 and -2 sequences among non-digitate species of Laminaria (Phaeophyceae) from Hokkaido, Japan

inferredcites →https://doi.org/10.1111/j.1550-7408.2005.3327r.xopenalex-snapshot

Paramecium aureliaRevisited

inferredcites →https://doi.org/10.1139/g02-103openalex-snapshot

The correlation between rDNA copy number and genome size in eukaryotes

inferredcites →https://doi.org/10.1139/g05-037openalex-snapshot

Unusual compact rDNA gene arrangements within some members of the Ascomycota: evidence for molecular co-evolution between ITS1 and ITS2

inferredcites →https://doi.org/10.1186/1471-2105-7-498openalex-snapshot

4SALE – A tool for synchronous RNA sequence and secondary structure alignment and editing

inferredcites →https://doi.org/10.1261/rna.2144205openalex-snapshot

Homology modeling revealed more than 20,000 rRNA internal transcribed spacer 2 (ITS2) secondary structures

inferredcites →https://doi.org/10.1261/rna.7204505openalex-snapshot

A common core of secondary structure of the internal transcribed spacer 2 (ITS2) throughout the Eukaryota

inferredcites →https://doi.org/10.1534/genetics.105.044503openalex-snapshot

Portrait of a Species

inferredcites →https://doi.org/10.2307/2419651openalex-snapshot

Evolution and Speciation of Island Plants.

inferredcites →https://doi.org/10.3233/isb-00187openalex-snapshot

CBCAnalyzer: Inferring Phylogenies Based on Compensatory Base Changes in RNA Secondary Structures

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Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Evolution, characterization and phylogenetic utility of ITS2 gene in Orthoptera and some Polyneoptera: Highly variable at the order level and highly conserved at the species level

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Ribosomal ITS Sequences Allow Resolution of Freshwater Sponge Phylogeny with Alignments Guided by Secondary Structure Prediction

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Secondary Structure of the rRNA ITS2 Region Reveals Key Evolutionary Patterns in Acroporid Corals

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Evolution of Helix Formation in the Ribosomal Internal Transcribed Spacer 2 (ITS2) and Its Significance for RNA Secondary Structures

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Morphology, phylogeny, and toxicity of Atama complex (Dinophyceae) from the Chukchi Sea

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Secondary structure analysis of ITS2 in the rDNA of three Indian paramphistomid species found in local livestock

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Utility of divergent domains of 28S ribosomal RNA in species discrimination of paramphistomes (Trematoda: Digenea: Paramphistomoidea)

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Differential diagnosis and molecular characterization of Hymenolepis nana and Hymenolepis diminuta (Cestoda: Cyclophyllidea: Hymenolepididae) based on nuclear rDNA ITS2 gene marker

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Filling gaps in the microsporidian tree: rDNA phylogeny of Chytridiopsis typographi (Microsporidia: Chytridiopsida)

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Solving an old enigma: Morellospora saccamoebae gen. nov., sp. nov. (Rozellomycota), a Sphaerita-like parasite of free-living amoebae

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Intra-individual ITS polymorphism and hybridization in Pulmonaria obscura Dumort. and Pulmonaria angustifolia L. (Boraginaceae)

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Evaluation of DNA barcode candidates for the discrimination of the large plant family Apocynaceae

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Edaphochloris, gen. nov.: a new genus of soil green algae (Trebouxiophyceae, Chlorophyta) with simple morphology

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Morphology evolution and molecular phylogeny of Pestalotiopsis (Coelomycetes) based on ITS2 secondary structure

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Evaluation of the internal transcribed spacer 2 (ITS2) as a molecular marker for phylogenetic inference using sequence and secondary structure information in blow flies (Diptera: Calliphoridae)

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ITS2 secondary structure for species circumscription: case study in southern African Strychnos L. (Loganiaceae)

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Molecular phylogeny of 21 tropical bamboo species reconstructed by integrating non-coding internal transcribed spacer (ITS1 and 2) sequences and their consensus secondary structure

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ITS2 sequence–structure phylogeny reveals diverse endophytic Pseudocercospora fungi on poplars

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Chlorella sorokiniana (formerly C. vulgaris) UTEX 2714, a non-thermotolerant microalga useful for biotechnological applications and as a reference strain

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Morphology, phylogeny and fatty acid profiles of Meyerella similis from freshwater ponds and Meyerella krienitzii sp. nov. from soil (Trebouxiophyceae, Chlorophyta)

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A PCR based SNPs marker for specific characterization of English walnut (Juglans regia L.) cultivars

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DNA barcode ITS2 coupled with high resolution melting (HRM) analysis for taxonomic identification of Sideritis species growing in Greece

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Gynichthys diakidnus n. g., n. sp. (Digenea: Cryptogonimidae) from the grunt Plectorhinchus gibbosus (Lacépède, 1802) (Perciformes: Haemulidae) off the Great Barrier Reef, Australia

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Cryptic species of Euryakaina n. g. (Digenea: Cryptogonimidae) from sympatric lutjanids in the Indo-West Pacific

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Identification of cortex herbs using the DNA barcode nrITS2

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Nucleotide composition bias of rDNA sequences as a source of phylogenetic artifacts in Basidiomycota—a case of a new lineage of a uredinicolous Ramularia-like anamorph with affinities to Ustilaginomycotina

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Secondary Structure Analysis of Fasciola from Semi-wild Ruminants of Northeast India

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Multiple microalgal partners in symbiosis with the acantharian Acanthochiasma sp. (Radiolaria)

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Antimicrobial activity and molecular characterization of an endophytic fungus, Quambalaria sp. isolated from Ipomoea carnea

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A novel Nannochloris-Labrenzia co-culture achieves high productivity under simulated diel conditions

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QR code labeling system for Xueteng-related herbs based on DNA barcode

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Monoblepharidomycetes diversity includes new parasitic and saprotrophic species with highly intronized rDNA

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inferred← citeshttps://doi.org/10.1016/j.gene.2008.10.012openalex-snapshot

5.8S-28S rRNA interaction and HMM-based ITS2 annotation

inferred← citeshttps://doi.org/10.1016/j.hal.2008.09.004openalex-snapshot

Secondary structural modeling of the second internal transcribed spacer (ITS2) from Pfiesteria-like dinoflagellates (Dinophyceae)

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Pseudo-nitzschia physiological ecology, phylogeny, toxicity, monitoring and impacts on ecosystem health

inferred← citeshttps://doi.org/10.1016/j.hal.2011.10.026openalex-snapshot

Biology, ecology and bloom dynamics of the toxic marine dinoflagellate Pyrodinium bahamense

inferred← citeshttps://doi.org/10.1016/j.hal.2015.05.002openalex-snapshot

Morphological and genetic analysis of the Coolia monotis species complex with the introduction of two new species, Coolia santacroce sp. nov. and Coolia palmyrensis sp. nov. (Dinophyceae)

inferred← citeshttps://doi.org/10.1016/j.hal.2016.02.010openalex-snapshot

New scenario for speciation in the benthic dinoflagellate genus Coolia (Dinophyceae)

inferred← citeshttps://doi.org/10.1016/j.hal.2016.11.004openalex-snapshot

Molecular and phylogenetic characterization of Ostreopsis (Dinophyceae) and the description of a new species, Ostreopsis rhodesae sp. nov., from a subtropical Australian lagoon

inferred← citeshttps://doi.org/10.1016/j.hal.2017.06.008openalex-snapshot

Pseudo-nitzschia simulans sp. nov. (Bacillariophyceae), the first domoic acid producer from Chinese waters

inferred← citeshttps://doi.org/10.1016/j.hal.2022.102356openalex-snapshot

Morphology and phylogeny of Prorocentrum porosum sp. nov. (Dinophyceae): A new benthic toxic dinoflagellate from the Atlantic and Pacific Oceans

inferred← citeshttps://doi.org/10.1016/j.ijppaw.2018.10.002openalex-snapshot

First molecular identification of Vorticella sp. from freshwater shrimps in Tainan, Taiwan

inferred← citeshttps://doi.org/10.1016/j.jep.2010.04.026openalex-snapshot

Identification of medicinal plants in the family Fabaceae using a potential DNA barcode ITS2

inferred← citeshttps://doi.org/10.1016/j.parint.2018.01.002openalex-snapshot

Genetic diversity and phylogenetic relations of salmon trematode Nanophyetus japonensis

inferred← citeshttps://doi.org/10.1016/j.parint.2020.102103openalex-snapshot

Morphological description of Opalina obtrigonoidea Metcalf, 1923 (Heterokonta, Opalinea) from Duttaphrynus melanostictus and evaluation of the ITS region as a suitable genetic marker for inter-species identification in Opalina

inferred← citeshttps://doi.org/10.1016/j.plasmid.2021.102567openalex-snapshot

The extrachromosomal elements of the Naegleria genus: How little we know

inferred← citeshttps://doi.org/10.1016/j.protis.2008.05.002openalex-snapshot

Analysis of the Internal Transcribed Spacer 2 (ITS2) Region of Scuticociliates and Related Taxa (Ciliophora, Oligohymenophorea) to Infer their Evolution and Phylogeny

inferred← citeshttps://doi.org/10.1016/j.protis.2008.06.002openalex-snapshot

Planomonadida ord. nov. (Apusozoa): Ultrastructural Affinity with Micronuclearia podoventralis and Deep Divergences within Planomonas gen. nov.

inferred← citeshttps://doi.org/10.1016/j.protis.2008.11.007openalex-snapshot

Phylogeny, Taxonomy, and Astounding Genetic Diversity of Glissomonadida ord. nov., The Dominant Gliding Zooflagellates in Soil (Protozoa: Cercozoa)

inferred← citeshttps://doi.org/10.1016/j.protis.2009.01.004openalex-snapshot

Phylogeny and Classification of Cercomonadida (Protozoa, Cercozoa): Cercomonas, Eocercomonas, Paracercomonas, and Cavernomonas gen. nov.

inferred← citeshttps://doi.org/10.1016/j.protis.2009.07.001openalex-snapshot

Barcoding of Diatoms: Nuclear Encoded ITS Revisited

inferred← citeshttps://doi.org/10.1016/j.protis.2009.10.003openalex-snapshot

Microevolution and Speciation in Thalassiosira weissflogii (Bacillariophyta)

inferred← citeshttps://doi.org/10.1016/j.protis.2009.11.004openalex-snapshot

Secondary Structure Models for the Internal Transcribed Spacer (ITS) Region 1 from Symbiotic Dinoflagellates

inferred← citeshttps://doi.org/10.1016/j.protis.2009.12.006openalex-snapshot

A Fully Resolved Phylogeny of the Social Amoebas (Dictyostelia) Based on Combined SSU and ITS rDNA Sequences

inferred← citeshttps://doi.org/10.1016/j.protis.2011.06.002openalex-snapshot

New Genera, Species, and Improved Phylogeny of Glissomonadida (Cercozoa)

inferred← citeshttps://doi.org/10.1016/j.protis.2011.06.008openalex-snapshot

Genetic Heterogeneity in Internal Transcribed Spacer Genes of Balantidium coli (Litostomatea, Ciliophora)

inferred← citeshttps://doi.org/10.1016/j.protis.2013.04.005openalex-snapshot

A Consensus Secondary Structure of ITS2 in the Chlorophyta Identified by Phylogenetic Reconstruction

inferred← citeshttps://doi.org/10.1016/j.protis.2013.06.002openalex-snapshot

Morphology, Genome Plasticity, and Phylogeny in the Genus Ostreococcus Reveal a Cryptic Species, O. mediterraneus sp. nov. (Mamiellales, Mamiellophyceae)

inferred← citeshttps://doi.org/10.1016/j.protis.2017.06.002openalex-snapshot

Molecular Evidence of Apatococcus , including A. fuscideae sp. nov., as Photobiont in the Genus Fuscidea

inferred← citeshttps://doi.org/10.1016/j.protis.2017.09.002openalex-snapshot

Revision of the Genus Micromonas Manton et Parke (Chlorophyta, Mamiellophyceae), of the Type Species M. pusilla (Butcher) Manton & Parke and of the Species M. commoda van Baren, Bachy and Worden and Description of Two New Species Based on the Genetic and Phenotypic Characterization of Cultured…

inferred← citeshttps://doi.org/10.1016/j.protis.2018.09.005openalex-snapshot

Cryptic Diversity: a Long-lasting Issue for Diatomologists

inferred← citeshttps://doi.org/10.1016/j.protis.2021.125832openalex-snapshot

Hemiselmis aquamarina sp. nov. (Cryptomonadales, Cryptophyceae), A Cryptophyte with A Novel Phycobiliprotein Type (Cr-PC 564)

inferred← citeshttps://doi.org/10.1016/j.rsma.2024.103654openalex-snapshot

Baseline study on the seagrass distribution and species diversity of the seagrass at West Sea (Viet Nam) with integrated approaches

inferred← citeshttps://doi.org/10.1016/j.sajb.2022.10.030openalex-snapshot

Morphology, molecular phylogeny, and species delimitation within microalgal genera Eubrownia, Spongiococcum, and Chlorococcum (Chlorophyceae, Chlorophyta)

inferred← citeshttps://doi.org/10.1016/j.simyco.2017.11.004openalex-snapshot

Phylogenetic classification and generic delineation ofCalyptosphaeriagen. nov.,Lentomitella,SpadicoidesandTorrentispora(Sordariomycetes)

inferred← citeshttps://doi.org/10.1016/j.tig.2015.01.002openalex-snapshot

Nuclear rRNA transcript processing versus internal transcribed spacer secondary structure

inferred← citeshttps://doi.org/10.1016/j.ympev.2008.07.023openalex-snapshot

Phylogenetic relationships among zooxanthellae (Symbiodinium) associated to excavating sponges (Cliona spp.) reveal an unexpected lineage in the Caribbean

inferred← citeshttps://doi.org/10.1016/j.ympev.2008.10.008openalex-snapshot

Is there a molecular key to the level of “biological species” in eukaryotes? A DNA guide

inferred← citeshttps://doi.org/10.1016/j.ympev.2008.11.004openalex-snapshot

Comparative analysis of sequences and secondary structures of the rRNA internal transcribed spacer 2 (ITS2) in pollen beetles of the subfamily Meligethinae (Coleoptera, Nitidulidae): Potential use of slippage-derived sequences in molecular systematics

inferred← citeshttps://doi.org/10.1016/j.ympev.2009.02.018openalex-snapshot

A phylogeny of the cannibal snails of southern Africa, genus Natalina sensu lato (Pulmonata: Rhytididae): Assessing concordance between morphology and molecular data

inferred← citeshttps://doi.org/10.1016/j.ympev.2009.07.036openalex-snapshot

Compensatory base changes illuminate morphologically difficult taxonomy

inferred← citeshttps://doi.org/10.1016/j.ympev.2010.02.030openalex-snapshot

Analysis of the secondary structure of ITS transcripts in peritrich ciliates (Ciliophora, Oligohymenophorea): Implications for structural evolution and phylogenetic reconstruction

inferred← citeshttps://doi.org/10.1016/j.ympev.2010.04.025openalex-snapshot

The analysis of rRNA sequence-structure in phylogenetics: An application to the family Pectinidae (Mollusca: Bivalvia)

inferred← citeshttps://doi.org/10.1016/j.ympev.2011.01.013openalex-snapshot

Evolution of the 5.8S nrDNA gene and internal transcribed spacers in Carapichea ipecacuanha (Rubiaceae) within a phylogeographic context

inferred← citeshttps://doi.org/10.1016/j.ympev.2011.08.026openalex-snapshot

Molecular evidence of cryptic speciation, historical range expansion, and recent intraspecific hybridization in the Neotropical seasonal forest tree Cedrela fissilis (Meliaceae)

inferred← citeshttps://doi.org/10.1016/j.ympev.2012.01.026openalex-snapshot

ITS2 Database IV: Interactive taxon sampling for internal transcribed spacer 2 based phylogenies

inferred← citeshttps://doi.org/10.1016/j.ympev.2012.08.007openalex-snapshot

Molecular phylogenetics of Oestroidea (Diptera: Calyptratae) with emphasis on Calliphoridae: Insights into the inter-familial relationships and additional evidence for paraphyly among blowflies

inferred← citeshttps://doi.org/10.1016/j.ympev.2013.01.018openalex-snapshot

Evaluation of the authenticity of a highly novel environmental sequence from boreal forest soil using ribosomal RNA secondary structure modeling

inferred← citeshttps://doi.org/10.1016/j.ympev.2014.06.015openalex-snapshot

Gorgonia mariae and Antillogorgia bipinnata populations inferred from compensatory base change analysis of the internal transcribed spacer 2

inferred← citeshttps://doi.org/10.1016/j.ympev.2015.08.003openalex-snapshot

Comparison of five methods for delimitating species in Ophion Fabricius, a diverse genus of parasitoid wasps (Hymenoptera, Ichneumonidae)

inferred← citeshttps://doi.org/10.1016/j.ympev.2016.05.020openalex-snapshot

Molecular evidence of hybrid zones of Cedrela (Meliaceae) in the Yungas of Northwestern Argentina

inferred← citeshttps://doi.org/10.1016/j.ympev.2016.05.041openalex-snapshot

Molecular phylogeny and species delimitation within the ciliate genus Spirostomum (Ciliophora, Postciliodesmatophora, Heterotrichea), using the internal transcribed spacer region

inferred← citeshttps://doi.org/10.1016/j.ympev.2017.08.015openalex-snapshot

Evolution of ribosomal internal transcribed spacers in Deuterostomia

inferred← citeshttps://doi.org/10.1016/j.ympev.2017.09.008openalex-snapshot

Revisiting the phylogeny of Zoanthidea (Cnidaria: Anthozoa): Staggered alignment of hypervariable sequences improves species tree inference

inferred← citeshttps://doi.org/10.1016/j.ympev.2018.04.035openalex-snapshot

Dispersal and speciation: The cross Atlantic relationship of two parasitic cnidarians

inferred← citeshttps://doi.org/10.1016/j.ympev.2018.08.014openalex-snapshot

A consensus secondary structure of ITS2 for the diatom Order Cymatosirales (Mediophyceae, Bacillariophyta) and reappraisal of the order based on DNA, morphology, and reproduction

inferred← citeshttps://doi.org/10.1016/j.ympev.2019.106531openalex-snapshot

Untangling a mess of worms: Species delimitations reveal morphological crypsis and variability in Southeast Asian semi-aquatic earthworms (Almidae, Glyphidrilus)

inferred← citeshttps://doi.org/10.1017/cbo9780511974878.007openalex-snapshot

Everything is everywhere: a twenty-first century de-/reconstruction with respect to protists

inferred← citeshttps://doi.org/10.1017/cbo9781139236355.010openalex-snapshot

Protist systematics, ecology and next generation sequencing

inferred← citeshttps://doi.org/10.1017/s0022149x11000125openalex-snapshot

Molecular characterization of pouched amphistome parasites (Trematoda: Gastrothylacidae) using ribosomal ITS2 sequence and secondary structures

inferred← citeshttps://doi.org/10.1017/s0022149x16000390openalex-snapshot

Ribosomal DNA analysis of isolates of the liver fluke Opisthorchis pedicellata (Verma, 1927) from two siluroid fish species in India

inferred← citeshttps://doi.org/10.1017/s0024282919000355openalex-snapshot

Peltigera shennongjiana, a new cyanolichen from Central China

inferred← citeshttps://doi.org/10.1017/s003118200999179xopenalex-snapshot

Identification of Giardia species and Giardia duodenalis assemblages by sequence analysis of the 5.8S rDNA gene and internal transcribed spacers

inferred← citeshttps://doi.org/10.1038/hdy.2013.135openalex-snapshot

Disparate molecular evolution of two types of repetitive DNAs in the genome of the grasshopper Eyprepocnemis plorans

inferred← citeshttps://doi.org/10.1038/ismej.2017.7openalex-snapshot

Seasonal patterns in Arctic prasinophytes and inferred ecology of Bathycoccus unveiled in an Arctic winter metagenome

inferred← citeshttps://doi.org/10.1038/s41396-023-01359-3openalex-snapshot

Evolution of snow algae, from cosmopolitans to endemics, revealed by DNA analysis of ancient ice

inferred← citeshttps://doi.org/10.1038/s41467-018-05521-wopenalex-snapshot

Bipolar dispersal of red-snow algae

inferred← citeshttps://doi.org/10.1038/s41598-017-12412-5openalex-snapshot

Chloropicophyceae, a new class of picophytoplanktonic prasinophytes

inferred← citeshttps://doi.org/10.1038/s41598-019-53752-8openalex-snapshot

The screening and identification of DNA barcode sequences for Rehmannia

inferred← citeshttps://doi.org/10.1038/s41598-021-99376-9openalex-snapshot

Lipid accumulation by Coelastrella multistriata (Scenedesmaceae, Sphaeropleales) during nitrogen and phosphorus starvation

inferred← citeshttps://doi.org/10.1038/s41598-023-39673-7openalex-snapshot

Ultra-deep sequencing of 45S rDNA to discern intragenomic diversity in three Chrysodeixis species for molecular identification

inferred← citeshttps://doi.org/10.1071/is09048openalex-snapshot

A revision of the textricellin spider genus Raveniella (Araneae : Araneoidea : Micropholcommatidae): exploring patterns of phylogeny and biogeography in an Australian biodiversity hotspot

inferred← citeshttps://doi.org/10.1080/0269249x.2010.9705834openalex-snapshot

DIVERSITY OFPSEUDO-NITZSCHIAIN THE SOUTHEASTERN BAY OF BISCAY

inferred← citeshttps://doi.org/10.1080/09670260902855873openalex-snapshot

Morphological and molecular characteristics of selected species ofMinidiscus(Bacillariophyta, Thalassiosiraceae)

inferred← citeshttps://doi.org/10.1080/09670262.2013.790996openalex-snapshot

A novel species in the genusHeveochlorella(Trebouxiophyceae, Chlorophyta) witnesses the evolution from an epiphytic into an endophytic lifestyle in tree-dwelling green algae

inferred← citeshttps://doi.org/10.1080/09670262.2017.1386328openalex-snapshot

Biecheleria tirezensis sp. nov. (Dinophyceae, Suessiales), a new halotolerant dinoflagellate species isolated from the athalassohaline Tirez natural pond in Spain

inferred← citeshttps://doi.org/10.1080/09670262.2018.1558286openalex-snapshot

Desmodesmus tropicus (Chlorophyta) in the Danube Delta – reassessing the phylogeny of the series Maximi

inferred← citeshttps://doi.org/10.1080/09670262.2019.1618920openalex-snapshot

Coccomyxa cimbricasp. nov., a green microalga found in association with carnivorous plants of the genusDroseraL.

inferred← citeshttps://doi.org/10.1080/09670262.2022.2042603openalex-snapshot

Ultrastructure and phylogeny of Parietochloris toyamaensis sp. nov. and P. bilobata (Trebouxiophyceae)

inferred← citeshttps://doi.org/10.1080/09670262.2026.2696474openalex-snapshot

Taxonomic implications of revealing dimorphism in the Pyrenomonadaceae (Cryptophyceae): how many genera?

inferred← citeshttps://doi.org/10.1080/13880209.2018.1499780openalex-snapshot

Phylogenetic analysis of Uncaria species based on internal transcribed spacer (ITS) region and ITS2 secondary structure

inferred← citeshttps://doi.org/10.1080/14772000.2015.1102172openalex-snapshot

Molecular taxonomy of Hyrcanian Alnus using nuclear ribosomal ITS and chloroplast trnH-psbA DNA barcode markers

inferred← citeshttps://doi.org/10.1080/14772000.2025.2607995openalex-snapshot

When the male genitalia do not provide useful taxonomic characters: species delimitation of the Aulacizes conspersa Walker complex (Hemiptera: Cicadellidae)

inferred← citeshttps://doi.org/10.1080/20442041.2017.1320507openalex-snapshot

Intraspecific and interspecific sequence variability in the ITS region of the rDNA of freshwater sponges of Lake Baikal and East Siberia

inferred← citeshttps://doi.org/10.1086/691788openalex-snapshot

Comparative Molecular and Morphological Variation Analysis of Siderastrea (Anthozoa, Scleractinia) Reveals the Presence of Siderastrea stellata in the Gulf of Mexico

inferred← citeshttps://doi.org/10.1093/aob/mcr275openalex-snapshot

Phylogeny of Oedogoniales, Chaetophorales and Chaetopeltidales (Chlorophyceae): inferences from sequence-structure analysis of ITS2

inferred← citeshttps://doi.org/10.1093/aob/mcz062openalex-snapshot

Alternative analyses of compensatory base changes in an ITS2 phylogeny of Corydalis (Papaveraceae)

inferred← citeshttps://doi.org/10.1093/aobpla/plv142openalex-snapshot

Phylogeography above the species level for perennial species in a composite genus

inferred← citeshttps://doi.org/10.1093/botlinnean/boz031openalex-snapshot

Taxonomy of dark- and white-barked birches related to Betula pendula and B. pubescens (Betulaceae) in Ukraine based on both morphological traits and DNA markers

inferred← citeshttps://doi.org/10.1093/femsec/fiad057openalex-snapshot

Phylogeny and lipid profiles of snow-algae isolated from Norwegian red-snow microbiomes

inferred← citeshttps://doi.org/10.1093/femsec/fiz064openalex-snapshot

Sanguina nivaloides and Sanguina aurantia gen. et spp. nov. (Chlorophyta): the taxonomy, phylogeny, biogeography and ecology of two newly recognised algae causing red and orange snow

inferred← citeshttps://doi.org/10.1093/icb/icq056openalex-snapshot

Molecular Phylogenetic Insights into the Evolution of Octocorallia: A Review

inferred← citeshttps://doi.org/10.1093/ismejo/wraf197openalex-snapshot

Colonization history of snow algae on Hawai‘i island

inferred← citeshttps://doi.org/10.1093/jme/tjaa132openalex-snapshot

Genetic Diversity of Anopheles coustani (Diptera: Culicidae) in Malaria Transmission Foci in Southern and Central Africa

inferred← citeshttps://doi.org/10.1093/molbev/msr303openalex-snapshot

Low Evolutionary Diversification in a Widespread and Abundant Uncultured Protist (MAST-4)

inferred← citeshttps://doi.org/10.1093/molbev/mst106openalex-snapshot

Contrasting Patterns of Evolution of 45S and 5S rDNA Families Uncover New Aspects in the Genome Constitution of the Agronomically Important Grass Thinopyrum intermedium (Triticeae)

inferred← citeshttps://doi.org/10.1093/mollus/eyae026openalex-snapshot

The polymorphic top-shell puzzle: iterative taxonomy of Calliostoma Swainson, 1840 (Gastropoda: Calliostomatidae), in the Mediterranean Sea

inferred← citeshttps://doi.org/10.1093/nar/gkm827openalex-snapshot

The ITS2 Database II: homology modelling RNA structure for molecular systematics

inferred← citeshttps://doi.org/10.1093/nar/gkp966openalex-snapshot

The ITS2 Database III—sequences and structures for phylogeny

inferred← citeshttps://doi.org/10.1093/zoolinnean/zlab063openalex-snapshot

DNA barcoding and coalescent-based delimitation of endosymbiotic clevelandellid ciliates (Ciliophora: Clevelandellida): a shift to molecular taxonomy in the inventory of ciliate diversity in panesthiine cockroaches

inferred← citeshttps://doi.org/10.1098/rspb.2007.1067openalex-snapshot

Yeast forms dominate fungal diversity in the deep oceans

inferred← citeshttps://doi.org/10.1098/rspb.2013.1177openalex-snapshot

An ITS-based phylogenetic framework for the genus Vorticella : finding the molecular and morphological gaps in a taxonomically difficult group

inferred← citeshttps://doi.org/10.1099/ijs.0.65310-0openalex-snapshot

Multigene phylogenies of clonal Spumella-like strains, a cryptic heterotrophic nanoflagellate, isolated from different geographical regions

inferred← citeshttps://doi.org/10.1111/1748-5967.12612openalex-snapshot

Genetic variation of chigger mites in the Republic of Korea

inferred← citeshttps://doi.org/10.1111/1758-2229.12026openalex-snapshot

Ribosomal DNA analyses reveal greater sequence variation in P olymyxa species than previously thought and indicate the possibility of new ribotype‐host‐virus associations

inferred← citeshttps://doi.org/10.1111/j.1096-0031.2010.00328.xopenalex-snapshot

Applying plant DNA barcodes for Rosaceae species identification

inferred← citeshttps://doi.org/10.1111/j.1365-2699.2008.01935.xopenalex-snapshot

The origin and evolution of Indomalesian, Australasian and Pacific island biotas: insights from Aglaieae (Meliaceae, Sapindales)

inferred← citeshttps://doi.org/10.1111/j.1365-294x.2009.04480.xopenalex-snapshot

Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

inferred← citeshttps://doi.org/10.1111/j.1439-0469.2009.00553.xopenalex-snapshot

Secondary structure and phylogenetic analysis of the internal transcribed spacers 1 and 2 of bush crickets (Orthoptera: Tettigoniidae: Barbitistini)

inferred← citeshttps://doi.org/10.1111/j.1440-1835.2009.00552.xopenalex-snapshot

Polyphyletic distribution of bristle formation in Chlorellaceae: Micractinium, Diacanthos, Didymogenes and Hegewaldia gen. nov. (Trebouxiophyceae, Chlorophyta)

inferred← citeshttps://doi.org/10.1111/j.1440-1835.2010.00579.xopenalex-snapshot

Chlorella variabilis and Micractinium reisseri sp. nov. (Chlorellaceae, Trebouxiophyceae): Redescription of the endosymbiotic green algae of Paramecium bursaria (Peniculia, Oligohymenophorea) in the 120th year

inferred← citeshttps://doi.org/10.1111/j.1529-8817.2009.00778.xopenalex-snapshot

MORPHOLOGY AND MOLECULAR CHARACTERIZATION OF A NEW SPECIES OF THECATE BENTHIC DINOFLAGELLATE, COOLIA MALAYENSIS SP. NOV. (DINOPHYCEAE)1

inferred← citeshttps://doi.org/10.1111/j.1529-8817.2010.00813.xopenalex-snapshot

POLYPHYLETIC ORIGIN OF THE DICTYOSPHAERIUM MORPHOTYPE WITHIN CHLORELLACEAE (TREBOUXIOPHYCEAE)1

inferred← citeshttps://doi.org/10.1111/j.1529-8817.2011.00989.xopenalex-snapshot

UPDATING THE GENUS DICTYOSPHAERIUM AND DESCRIPTION OF MUCIDOSPHAERIUM GEN. NOV. (TREBOUXIOPHYCEAE) BASED ON MORPHOLOGICAL AND MOLECULAR DATA1

inferred← citeshttps://doi.org/10.1111/j.1529-8817.2011.01010.xopenalex-snapshot

SSU rRNA GENE PHYLOGENY OF MORPHOSPECIES AFFILIATED TO THE BIOASSAY ALGA “SELENASTRUM CAPRICORNUTUM” RECOVERED THE POLYPHYLETIC ORIGIN OF CRESCENT-SHAPED CHLOROPHYTA1

inferred← citeshttps://doi.org/10.1111/j.1529-8817.2011.01048.xopenalex-snapshot

TRUE IDENTITY OF THE EUROPEAN FRESHWATERULVA(CHLOROPHYTA, ULVOPHYCEAE) REVEALED BY A COMBINED MOLECULAR AND MORPHOLOGICAL APPROACH1

inferred← citeshttps://doi.org/10.1111/j.1529-8817.2012.01132.xopenalex-snapshot

CRYPTIC AND PSEUDO‐CRYPTIC DIVERSITY IN DIATOMS—WITH DESCRIPTIONS OF PSEUDO‐NITZSCHIA HASLEANA SP. NOV. AND P. FRYXELLIANA SP. NOV.1

inferred← citeshttps://doi.org/10.1111/j.1529-8817.2012.01232.xopenalex-snapshot

Tetraflagellochloris mauritanica gen. et sp. nov. (Chlorophyceae), a New Flagellated Alga from the Mauritanian Desert: Morphology, Ultrastructure, and Phylogenetic Framing

inferred← citeshttps://doi.org/10.1111/j.1550-7408.2009.00434.xopenalex-snapshot

A Molecular Perspective on Ecological Differentiation and Biogeography of Cyclotrichiid Ciliates

inferred← citeshttps://doi.org/10.1111/j.1755-0998.2008.02388.xopenalex-snapshot

Ecological barcoding of corallivory by second internal transcribed spacer sequences: hosts of coralliophiline gastropods detected by the cnidarian DNA in their stomach

inferred← citeshttps://doi.org/10.1111/j.1755-0998.2009.02633.xopenalex-snapshot

Barcoding diatoms: Is there a good marker?

inferred← citeshttps://doi.org/10.1111/j.1759-6831.2011.00124.xopenalex-snapshot

Efficiency of DNA barcodes for species delimitation: A case inPterygiellaOliv. (Orobanchaceae)

inferred← citeshttps://doi.org/10.1111/j.1759-6831.2012.00184.xopenalex-snapshot

Comparison of four DNA barcodes in identifying certain medicinal plants of Lamiaceae

inferred← citeshttps://doi.org/10.1111/jbi.12276openalex-snapshot

Footprints of past intensive diversification and structuring in the genus Zelkova (Ulmaceae) in south‐western Eurasia

inferred← citeshttps://doi.org/10.1111/jeu.12482openalex-snapshot

Phylogenic Diversity and Taxonomic Problems of the Dictyosphaerium Morphotype within the Parachlorella Clade (Chlorellaceae, Trebouxiophyceae)

inferred← citeshttps://doi.org/10.1111/jfd.13090openalex-snapshot

Saprolegnia molecular phylogeny among farmed teleosts in Nova Scotia, Canada

inferred← citeshttps://doi.org/10.1111/jpy.12130openalex-snapshot

The genus Pseudo-nitzschia (Bacillariophyceae) in a temperate estuary with description of two new species: Pseudo-nitzschia plurisecta sp. nov. and Pseudo-nitzschia abrensis sp. nov.

inferred← citeshttps://doi.org/10.1111/jpy.12437openalex-snapshot

Biodiversity of green algae covering artificial hard substrate surfaces in a suburban environment: a case study using molecular approaches

inferred← citeshttps://doi.org/10.1111/jpy.12903openalex-snapshot

Fatty Acid Content and Profile of the Novel Strain of Coccomyxa elongata (Trebouxiophyceae, Chlorophyta) Cultivated at Reduced Nitrogen and Phosphorus Concentrations

inferred← citeshttps://doi.org/10.1111/jpy.12932openalex-snapshot

Mantoniella beaufortii and Mantoniella baffinensis sp. nov. (Mamiellales, Mamiellophyceae), two new green algal species from the high arctic 1

inferred← citeshttps://doi.org/10.1111/jpy.13116openalex-snapshot

A New Species of Freshwater Algae Nephrochlamys yushanlensis sp. nov. (Selenastraceae, Sphaeropleales) and Its Lipid Accumulation during Nitrogen and Phosphorus Starvation

inferred← citeshttps://doi.org/10.1111/jpy.13318openalex-snapshot

The austral biflagellate Chloromonas rubroleosa (Chlorophyceae) is the closest relative of the unusual quadriflagellate genus Chlainomonas , both found in snow

inferred← citeshttps://doi.org/10.1111/jse.12221openalex-snapshot

Ribosomal DNA ITS1, 5.8S and ITS2 secondary structure, nuclear DNA content and phytochemical analyses reveal distinctive characteristics of four subclades of Protasparagus

inferred← citeshttps://doi.org/10.1111/jzs.12006openalex-snapshot

The ITS region of groundwater amphipods: length, secondary structure and phylogenetic information content in Crangonyctoids and Niphargids

inferred← citeshttps://doi.org/10.1111/mec.12074openalex-snapshot

Spatial and temporal patterns of genetic variation in the widespread antitropical deep‐sea coral P aragorgia arborea

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