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PubTator central: automated concept annotation for biomedical full text articles

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.jbi.2013.12.006openalex-snapshot

NCBI disease corpus: A resource for disease name recognition and concept normalization

inferredcites →https://doi.org/10.1016/j.ygeno.2016.10.003openalex-snapshot

A PubMed-wide study of endometriosis

inferredcites →https://doi.org/10.1038/s41598-018-24457-1openalex-snapshot

Integrative annotation and knowledge discovery of kinase post-translational modifications and cancer-associated mutations through federated protein ontologies and resources

inferredcites →https://doi.org/10.1088/1742-6596/1069/1/012037openalex-snapshot

Evaluation of the Performance of BioNLP Tools for Discovering Causal Genes in Terms with Pathway Enrichment

inferredcites →https://doi.org/10.1093/bioinformatics/btt156openalex-snapshot

tmVar: a text mining approach for extracting sequence variants in biomedical literature

inferredcites →https://doi.org/10.1093/bioinformatics/btt474openalex-snapshot

DNorm: disease name normalization with pairwise learning to rank

inferredcites →https://doi.org/10.1093/bioinformatics/btw343openalex-snapshot

TaggerOne: joint named entity recognition and normalization with semi-Markov Models

inferredcites →https://doi.org/10.1093/bioinformatics/btw511openalex-snapshot

HiPub: translating PubMed and PMC texts to networks for knowledge discovery

inferredcites →https://doi.org/10.1093/bioinformatics/btx439openalex-snapshot

On expert curation and scalability: UniProtKB/Swiss-Prot as a case study

inferredcites →https://doi.org/10.1093/bioinformatics/btx541openalex-snapshot

tmVar 2.0: integrating genomic variant information from literature with dbSNP and ClinVar for precision medicine

inferredcites →https://doi.org/10.1093/bioinformatics/bty114openalex-snapshot

A global network of biomedical relationships derived from text

inferredcites →https://doi.org/10.1093/bioinformatics/bty845openalex-snapshot

LION LBD: a literature-based discovery system for cancer biology

inferredcites →https://doi.org/10.1093/bioinformatics/bty871openalex-snapshot

Thalia: semantic search engine for biomedical abstracts

inferredcites →https://doi.org/10.1093/bioinformatics/btz070openalex-snapshot

PMC text mining subset in BioC: about three million full-text articles and growing

inferredcites →https://doi.org/10.1093/database/bas010openalex-snapshot

Argo: an integrative, interactive, text mining-based workbench supporting curation

inferredcites →https://doi.org/10.1093/database/bas020openalex-snapshot

Text mining for the biocuration workflow

inferredcites →https://doi.org/10.1093/database/bas043openalex-snapshot

Biocuration workflows and text mining: overview of the BioCreative 2012 Workshop Track II

inferredcites →https://doi.org/10.1093/database/bat064openalex-snapshot

BioC: a minimalist approach to interoperability for biomedical text processing

inferredcites →https://doi.org/10.1093/database/bau003openalex-snapshot

Literature mining of genetic variants for curation: quantifying the importance of supplementary material

inferredcites →https://doi.org/10.1093/database/bau038openalex-snapshot

iSimp in BioC standard format: enhancing the interoperability of a sentence simplification system

inferredcites →https://doi.org/10.1093/database/bau094openalex-snapshot

Hybrid curation of gene–mutation relations combining automated extraction and crowdsourcing

inferredcites →https://doi.org/10.1093/database/baw032openalex-snapshot

Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task

inferredcites →https://doi.org/10.1093/database/baw043openalex-snapshot

BRONCO: Biomedical entity Relation ONcology COrpus for extracting gene-variant-disease-drug relations

inferredcites →https://doi.org/10.1093/database/baw068openalex-snapshot

BioCreative V CDR task corpus: a resource for chemical disease relation extraction

inferredcites →https://doi.org/10.1093/database/baw161openalex-snapshot

Pressing needs of biomedical text mining in biocuration and beyond: opportunities and challenges

inferredcites →https://doi.org/10.1093/database/bay137openalex-snapshot

PubTerm: a web tool for organizing, annotating and curating genes, diseases, molecules and other concepts from PubMed records

inferredcites →https://doi.org/10.1093/nar/gks563openalex-snapshot

GeneView: a comprehensive semantic search engine for PubMed

inferredcites →https://doi.org/10.1093/nar/gkt441openalex-snapshot

PubTator: a web-based text mining tool for assisting biocuration

inferredcites →https://doi.org/10.1093/nar/gky355openalex-snapshot

LitVar: a semantic search engine for linking genomic variant data in PubMed and PMC

inferredcites →https://doi.org/10.1109/jbhi.2015.2422651openalex-snapshot

SimConcept: A Hybrid Approach for Simplifying Composite Named Entities in Biomedical Text

inferredcites →https://doi.org/10.1155/2015/918710openalex-snapshot

GNormPlus: An Integrative Approach for Tagging Genes, Gene Families, and Protein Domains

inferredcites →https://doi.org/10.1186/1471-2105-10-46openalex-snapshot

Is searching full text more effective than searching abstracts?

inferredcites →https://doi.org/10.1186/1471-2105-11-492openalex-snapshot

The structural and content aspects of abstracts versus bodies of full text journal articles are different

inferredcites →https://doi.org/10.1186/1471-2105-11-85openalex-snapshot

LINNAEUS: A species name identification system for biomedical literature

inferredcites →https://doi.org/10.1186/1471-2105-12-s8-s5openalex-snapshot

Cross-species gene normalization by species inference

inferredcites →https://doi.org/10.1186/1471-2105-9-402openalex-snapshot

Abbreviation definition identification based on automatic precision estimates

inferredcites →https://doi.org/10.1186/1758-2946-7-s1-s2openalex-snapshot

The CHEMDNER corpus of chemicals and drugs and its annotation principles

inferredcites →https://doi.org/10.1186/gb-2008-9-s2-s3openalex-snapshot

Overview of BioCreative II gene normalization

inferredcites →https://doi.org/10.1186/s13321-018-0317-4openalex-snapshot

Configurable web-services for biomedical document annotation

inferredcites →https://doi.org/10.1186/s13326-017-0113-5openalex-snapshot

12 years on – Is the NLM medical text indexer still useful and relevant?

inferredcites →https://doi.org/10.12688/wellcomeopenres.10210.1openalex-snapshot

SciLite: a platform for displaying text-mined annotations as a means to link research articles with biological data

inferredcites →https://doi.org/10.12688/wellcomeopenres.10210.2openalex-snapshot

SciLite: a platform for displaying text-mined annotations as a means to link research articles with biological data

inferredcites →https://doi.org/10.1371/journal.pcbi.1005017openalex-snapshot

Text Mining Genotype-Phenotype Relationships from Biomedical Literature for Database Curation and Precision Medicine

inferredcites →https://doi.org/10.1371/journal.pcbi.1005962openalex-snapshot

A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts

inferredcites →https://doi.org/10.1371/journal.pcbi.1006390openalex-snapshot

Scaling up data curation using deep learning: An application to literature triage in genomic variation resources

inferredcites →https://doi.org/10.1371/journal.pone.0038460openalex-snapshot

SR4GN: A Species Recognition Software Tool for Gene Normalization

inferredcites →https://doi.org/10.1371/journal.pone.0152725openalex-snapshot

DiMeX: A Text Mining System for Mutation-Disease Association Extraction

inferredcites →https://doi.org/10.1371/journal.pone.0164680openalex-snapshot

BEST: Next-Generation Biomedical Entity Search Tool for Knowledge Discovery from Biomedical Literature

inferredcites →https://doi.org/10.18653/v1/w17-2306openalex-snapshot

Results of the fifth edition of the BioASQ Challenge

inferredcites →https://doi.org/10.3115/v1/d14-1181openalex-snapshot

Convolutional Neural Networks for Sentence Classification

inferredcites →https://doi.org/10.4172/jpb.1000291openalex-snapshot

A Proteomic Study of Human Merkel Cell Carcinoma

inferredcites →https://doi.org/10.7171/jbt.18-2902-002openalex-snapshot

The Cellosaurus, a Cell-Line Knowledge Resource

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Integration of biomedical concepts for enhanced medical literature retrieval

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NETME: on-the-fly knowledge network construction from biomedical literature

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A network analysis to identify lung cancer comorbid diseases

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Advancing cancer care through artificial intelligence: from innovative models to clinical decision-making and regulatory integration

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A Comprehensive Step-by-Step Workflow for Biological Pathway Reconstruction and Analysis

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Relation-aware deep neural network enables more efficient biomedical knowledge acquisition from massive literature

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Current advancement in AI-integrated drug discovery: Methods and applications

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Systematic illumination of druggable genes in cancer genomes

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Zero-shot document-level biomedical relation extraction via scenario-based prompt design in two-stage with LLM

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Computational approaches to adverse outcome pathway networks: advances in construction, quantification, and regulatory decision support

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RIscoper 2.0: A deep learning tool to extract RNA biomedical relation sentences from literature

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MKG-GC: A multi-task learning-based knowledge graph construction framework with personalized application to gastric cancer

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BioTextQuest v2.0: An evolved tool for biomedical literature mining and concept discovery

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Darling (v2.0): Mining disease-related databases for the detection of biomedical entity associations

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PubMed and beyond: biomedical literature search in the age of artificial intelligence

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Data-driven historical characterization of epilepsy-associated genes

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Adverse outcome pathway from activation of the AhR to breast cancer-related death

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GEM: Genome Editing Meta-database, a dataset of genome editing related metadata systematically extracted from PubMed literatures

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Current research status and emerging trends in wheat: An integrated scientometric analysis based on ploidy uncovers hidden footprints in the scientific landscape

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The multilayer community structure of medulloblastoma

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History of childhood physical abuse is associated with gut microbiota diversity among adult psychiatric inpatients

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Unlocking biological insights from differentially expressed genes: Concepts, methods, and future perspectives

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NLM-Gene, a richly annotated gold standard dataset for gene entities that addresses ambiguity and multi-species gene recognition

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Improved biomedical word embeddings in the transformer era

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Towards a unified search: Improving PubMed retrieval with full text

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Creating an ignorance-base: Exploring known unknowns in the scientific literature

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Graph embedding-based link prediction for literature-based discovery in Alzheimer’s Disease

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Associating biological context with protein-protein interactions through text mining at PubMed scale

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BioREx: Improving biomedical relation extraction by leveraging heterogeneous datasets

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Semantics-enabled biomedical literature analytics

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Modeling temporal self and interactive evolution for biomedical hypothesis generation

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Cognitive analysis of metabolomics data for systems biology

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NLM-Chem, a new resource for chemical entity recognition in PubMed full text literature

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Europe PMC annotated full-text corpus for gene/proteins, diseases and organisms

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Annotated corpus for traditional formula-disease relationships in biomedical articles

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Untangling the genetic link between type 1 and type 2 diabetes using functional genomics

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Hierarchical network analysis of co-occurring bioentities in literature

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Microevolutionary dynamics of eccDNA in Chinese hamster ovary cells grown in fed-batch cultures under control and lactate-stressed conditions

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Knowledge graph-derived feed efficiency analysis via pig gut microbiota

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Machine learning tools match physician accuracy in multilingual text annotation

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Ontology-driven association rule mining for biomedical entity relationships: integrating hierarchical knowledge to improve gene-disease discovery

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Twenty-first century mouse genetics is again at an inflection point

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A text-guided protein design framework

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New advances in extracting and learning from protein–protein interactions within unstructured biomedical text data

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Analyzing the vast coronavirus literature with CoronaCentral

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Polymorphisms at site 469 of B-RAF protein associated with skin melanoma may be correlated with dabrafenib resistance: An in silico study

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Novel graph-based machine-learning technique for viral infectious diseases: application to influenza and hepatitis diseases

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Working the literature harder: what can text mining and bibliometric analysis reveal?

inferred← citeshttps://doi.org/10.1093/bib/bbaa142openalex-snapshot

Recent advances of automated methods for searching and extracting genomic variant information from biomedical literature

inferred← citeshttps://doi.org/10.1093/bib/bbab134openalex-snapshot

Knowledge bases and software support for variant interpretation in precision oncology

inferred← citeshttps://doi.org/10.1093/bib/bbac282openalex-snapshot

BioRED: a rich biomedical relation extraction dataset

inferred← citeshttps://doi.org/10.1093/bib/bbac383openalex-snapshot

OncoPubMiner: a platform for mining oncology publications

inferred← citeshttps://doi.org/10.1093/bib/bbac543openalex-snapshot

A comprehensive review on knowledge graphs for complex diseases

inferred← citeshttps://doi.org/10.1093/bib/bbaf377openalex-snapshot

A conceptual framework for human–AI collaborative genome annotation

inferred← citeshttps://doi.org/10.1093/bib/bbag348openalex-snapshot

Literature-informed gene extraction and ranking for multimodal data fusion

inferred← citeshttps://doi.org/10.1093/bioadv/vbac034openalex-snapshot

Gilda: biomedical entity text normalization with machine-learned disambiguation as a service

inferred← citeshttps://doi.org/10.1093/bioadv/vbae042openalex-snapshot

Extending BioMASS to construct mathematical models from external knowledge

inferred← citeshttps://doi.org/10.1093/bioadv/vbae106openalex-snapshot

Mining drug–target interactions from biomedical literature using chemical and gene descriptions-based ensemble transformer model

inferred← citeshttps://doi.org/10.1093/bioinformatics/btaa430openalex-snapshot

PEDL: extracting protein–protein associations using deep language models and distant supervision

inferred← citeshttps://doi.org/10.1093/bioinformatics/btaa660openalex-snapshot

Cell2Chem: mining explored and unexplored biosynthetic chemical spaces

inferred← citeshttps://doi.org/10.1093/bioinformatics/btab331openalex-snapshot

Utilizing image and caption information for biomedical document classification

inferred← citeshttps://doi.org/10.1093/bioinformatics/btab365openalex-snapshot

SimText: a text mining framework for interactive analysis and visualization of similarities among biomedical entities

inferred← citeshttps://doi.org/10.1093/bioinformatics/btab694openalex-snapshot

COVID-19 Knowledge Graph from semantic integration of biomedical literature and databases

inferred← citeshttps://doi.org/10.1093/bioinformatics/btab880openalex-snapshot

MedTator: a serverless annotation tool for corpus development

inferred← citeshttps://doi.org/10.1093/bioinformatics/btac539openalex-snapshot

CPRiL: compound–protein relationships in literature

inferred← citeshttps://doi.org/10.1093/bioinformatics/btac598openalex-snapshot

BERN2: an advanced neural biomedical named entity recognition and normalization tool

inferred← citeshttps://doi.org/10.1093/bioinformatics/btac654openalex-snapshot

CITEdb: a manually curated database of cell–cell interactions in human

inferred← citeshttps://doi.org/10.1093/bioinformatics/btac660openalex-snapshot

Learning temporal difference embeddings for biomedical hypothesis generation

inferred← citeshttps://doi.org/10.1093/bioinformatics/btac721openalex-snapshot

ViMRT: a text-mining tool and search engine for automated virus mutation recognition

inferred← citeshttps://doi.org/10.1093/bioinformatics/btad310openalex-snapshot

AIONER: all-in-one scheme-based biomedical named entity recognition using deep learning

inferred← citeshttps://doi.org/10.1093/bioinformatics/btad361openalex-snapshot

Consistency enhancement of model prediction on document-level named entity recognition

inferred← citeshttps://doi.org/10.1093/bioinformatics/btad599openalex-snapshot

GNorm2: an improved gene name recognition and normalization system

inferred← citeshttps://doi.org/10.1093/bioinformatics/btad603openalex-snapshot

PEDL+: protein-centered relation extraction from PubMed at your fingertip

inferred← citeshttps://doi.org/10.1093/bioinformatics/btad698openalex-snapshot

BELB: a biomedical entity linking benchmark

inferred← citeshttps://doi.org/10.1093/bioinformatics/btae185openalex-snapshot

Literature mining discerns latent disease–gene relationships

inferred← citeshttps://doi.org/10.1093/bioinformatics/btae194openalex-snapshot

NetMe 2.0: a web-based platform for extracting and modeling knowledge from biomedical literature as a labeled graph

inferred← citeshttps://doi.org/10.1093/bioinformatics/btae246openalex-snapshot

Integration of background knowledge for automatic detection of inconsistencies in gene ontology annotation

inferred← citeshttps://doi.org/10.1093/bioinformatics/btae402openalex-snapshot

Improving dictionary-based named entity recognition with deep learning

inferred← citeshttps://doi.org/10.1093/bioinformatics/btae564openalex-snapshot

HunFlair2 in a cross-corpus evaluation of biomedical named entity recognition and normalization tools

inferred← citeshttps://doi.org/10.1093/bioinformatics/btae648openalex-snapshot

Knowledge mining of brain connectivity in massive literature based on transfer learning

inferred← citeshttps://doi.org/10.1093/bioinformatics/btaf113openalex-snapshot

Lit-OTAR framework for extracting biological evidences from literature

inferred← citeshttps://doi.org/10.1093/bioinformatics/btaf376openalex-snapshot

CSpace: a concept embedding space for biomedical applications

inferred← citeshttps://doi.org/10.1093/bioinformatics/btaf685openalex-snapshot

Integrating curation into scientific publishing to train AI models

inferred← citeshttps://doi.org/10.1093/bioinformatics/btz857openalex-snapshot

Discovery of disease- and drug-specific pathways through community structures of a literature network

inferred← citeshttps://doi.org/10.1093/cvr/cvab067openalex-snapshot

Cardiovascular informatics: building a bridge to data harmony

inferred← citeshttps://doi.org/10.1093/database/baac037openalex-snapshot

AnthraxKP: a knowledge graph-based, Anthrax Knowledge Portal mined from biomedical literature

inferred← citeshttps://doi.org/10.1093/database/baac038openalex-snapshot

Creation and evaluation of full-text literature-derived, feature-weighted disease models of genetically determined developmental disorders

inferred← citeshttps://doi.org/10.1093/database/baac043openalex-snapshot

RegEl corpus: identifying DNA regulatory elements in the scientific literature

inferred← citeshttps://doi.org/10.1093/database/baac062openalex-snapshot

A roadmap for the functional annotation of protein families: a community perspective

inferred← citeshttps://doi.org/10.1093/database/baac066openalex-snapshot

Pre-trained models, data augmentation, and ensemble learning for biomedical information extraction and document classification

inferred← citeshttps://doi.org/10.1093/database/baac090openalex-snapshot

Assigning species information to corresponding genes by a sequence labeling framework

inferred← citeshttps://doi.org/10.1093/database/baac098openalex-snapshot

Chemical–protein relation extraction with ensembles of carefully tuned pretrained language models

inferred← citeshttps://doi.org/10.1093/database/baac102openalex-snapshot

NLM-Chem-BC7: manually annotated full-text resources for chemical entity annotation and indexing in biomedical articles

inferred← citeshttps://doi.org/10.1093/database/baad005openalex-snapshot

Chemical identification and indexing in full-text articles: an overview of the NLM-Chem track at BioCreative VII

inferred← citeshttps://doi.org/10.1093/database/baad036openalex-snapshot

BLAB2CancerKD: a knowledge graph database focusing on the association between lactic acid bacteria and cancer, but beyond

inferred← citeshttps://doi.org/10.1093/database/baad061openalex-snapshot

Building a large gene expression-cancer knowledge base with limited human annotations

inferred← citeshttps://doi.org/10.1093/database/baae039openalex-snapshot

DUVEL: an active-learning annotated biomedical corpus for the recognition of oligogenic combinations

inferred← citeshttps://doi.org/10.1093/database/baae057openalex-snapshot

Towards discovery: an end-to-end system for uncovering novel biomedical relations

inferred← citeshttps://doi.org/10.1093/database/baae069openalex-snapshot

The overview of the BioRED (Biomedical Relation Extraction Dataset) track at BioCreative VIII

inferred← citeshttps://doi.org/10.1093/database/baae071openalex-snapshot

The biomedical relationship corpus of the BioRED track at the BioCreative VIII challenge and workshop

inferred← citeshttps://doi.org/10.1093/database/baae079openalex-snapshot

Integrating deep learning architectures for enhanced biomedical relation extraction: a pipeline approach

inferred← citeshttps://doi.org/10.1093/database/baae106openalex-snapshot

Is metadata of articles about COVID-19 enough for multilabel topic classification task?

inferred← citeshttps://doi.org/10.1093/database/baae125openalex-snapshot

JTIS: enhancing biomedical document-level relation extraction through joint training with intermediate steps

inferred← citeshttps://doi.org/10.1093/database/baaf013openalex-snapshot

Integrating AI-powered text mining from PubTator into the manual curation workflow at the Comparative Toxicogenomics Database

inferred← citeshttps://doi.org/10.1093/database/baaf038openalex-snapshot

An open-source multi-semantic annotation dataset and automated recognition tool for viral carcinogenesis factors

inferred← citeshttps://doi.org/10.1093/database/bay137openalex-snapshot

PubTerm: a web tool for organizing, annotating and curating genes, diseases, molecules and other concepts from PubMed records

inferred← citeshttps://doi.org/10.1093/g3journal/jkac059openalex-snapshot

GeneCup: mining PubMed and GWAS catalog for gene–keyword relationships

inferred← citeshttps://doi.org/10.1093/g3journal/jkaf169openalex-snapshot

Limitations of current machine learning models in predicting enzymatic functions for uncharacterized proteins

inferred← citeshttps://doi.org/10.1093/glycob/cwaf030openalex-snapshot

GlycoSiteMiner: an ML/AI-assisted literature mining-based pipeline for extracting glycosylation sites from PubMed abstracts

inferred← citeshttps://doi.org/10.1093/infdis/jiaa332openalex-snapshot

ACE2 Expression Is Increased in the Lungs of Patients With Comorbidities Associated With Severe COVID-19

inferred← citeshttps://doi.org/10.1093/nar/gkaa328openalex-snapshot

SIB Literature Services: RESTful customizable search engines in biomedical literature, enriched with automatically mapped biomedical concepts

inferred← citeshttps://doi.org/10.1093/nar/gkaa333openalex-snapshot

TeamTat: a collaborative text annotation tool

inferred← citeshttps://doi.org/10.1093/nar/gkaa952openalex-snapshot

LitCovid: an open database of COVID-19 literature

inferred← citeshttps://doi.org/10.1093/nar/gkaa969openalex-snapshot

COVID19 Drug Repository: text-mining the literature in search of putative COVID19 therapeutics

inferred← citeshttps://doi.org/10.1093/nar/gkaa979openalex-snapshot

Gramene 2021: harnessing the power of comparative genomics and pathways for plant research

inferred← citeshttps://doi.org/10.1093/nar/gkab1011openalex-snapshot

HIT 2.0: an enhanced platform for Herbal Ingredients' Targets

inferred← citeshttps://doi.org/10.1093/nar/gkab326openalex-snapshot

LitSuggest: a web-based system for literature recommendation and curation using machine learning

inferred← citeshttps://doi.org/10.1093/nar/gkab779openalex-snapshot

ViMIC: a database of human disease-related virus mutations, integration sites and cis -effects

inferred← citeshttps://doi.org/10.1093/nar/gkac1005openalex-snapshot

LitCovid in 2022: an information resource for the COVID-19 literature

inferred← citeshttps://doi.org/10.1093/nar/gkac1139openalex-snapshot

Protection of the human gene research literature from contract cheating organizations known as research paper mills

inferred← citeshttps://doi.org/10.1093/nar/gkac983openalex-snapshot

COXPRESdb v8: an animal gene coexpression database navigating from a global view to detailed investigations

inferred← citeshttps://doi.org/10.1093/nar/gkad445openalex-snapshot

GePI : large-scale text mining, customized retrieval and flexible filtering of gene/protein interactions

inferred← citeshttps://doi.org/10.1093/nar/gkad914openalex-snapshot

MACC: a visual interactive knowledgebase of metabolite-associated cell communications

inferred← citeshttps://doi.org/10.1093/nar/gkae235openalex-snapshot

PubTator 3.0: an AI-powered literature resource for unlocking biomedical knowledge

inferred← citeshttps://doi.org/10.1093/nar/gkae366openalex-snapshot

REEV: review, evaluate and explain variants

inferred← citeshttps://doi.org/10.1093/narcan/zcae008openalex-snapshot

dbCRAF: a curated knowledgebase for regulation of radiation response in human cancer

inferred← citeshttps://doi.org/10.1093/nargab/lqab062openalex-snapshot

RENET2: high-performance full-text gene–disease relation extraction with iterative training data expansion

inferred← citeshttps://doi.org/10.1093/nargab/lqab113openalex-snapshot

Supervised learning with word embeddings derived from PubMed captures latent knowledge about protein kinases and cancer

inferred← citeshttps://doi.org/10.1099/jmm.0.001520openalex-snapshot

SARS-CoV-2 and Prevotella spp.: friend or foe? A systematic literature review

inferred← citeshttps://doi.org/10.1099/mgen.0.001183openalex-snapshot

Beyond blast: enabling microbiologists to better extract literature, taxonomic distributions and gene neighbourhood information for protein families

inferred← citeshttps://doi.org/10.1101/2020.07.17.208751openalex-snapshot

Making data-driven hypotheses for gene functions by integrating dependency, expression, and literature data

inferred← citeshttps://doi.org/10.1101/2021.03.04.433874openalex-snapshot

Linguistic Analysis of the bioRxiv Preprint Landscape

inferred← citeshttps://doi.org/10.1101/2021.03.09.434525openalex-snapshot

ChexMix: A Literature Content Extraction Tool for Bioentities

inferred← citeshttps://doi.org/10.1101/2021.05.14.444026openalex-snapshot

CovidExpress: an interactive portal for intuitive investigation on SARS-CoV-2 related transcriptomes

inferred← citeshttps://doi.org/10.1101/2021.09.15.460567openalex-snapshot

Accurate Name Entity Recognition for Biomedical Literatures: A Combined High-quality Manual Annotation and Deep-learning Natural Language Processing Study

inferred← citeshttps://doi.org/10.1101/2021.09.22.461375openalex-snapshot

Literature-Based Discovery beyond the ABC paradigm: a contrastive approach

inferred← citeshttps://doi.org/10.1101/2021.10.27.466183openalex-snapshot

A BERT-Based Hybrid System for Chemical Identification and Indexing in Full-Text Articles

inferred← citeshttps://doi.org/10.1101/2022.04.14.488416openalex-snapshot

BioAct: Biomedical Knowledge Base Construction using Active Learning

inferred← citeshttps://doi.org/10.1101/2022.05.27.493722openalex-snapshot

Systemic interindividual epigenetic variation in humans is associated with transposable elements and under strong genetic control

inferred← citeshttps://doi.org/10.1101/2022.08.07.503105openalex-snapshot

Analysis of Inbred Mouse strains’ High-Impact Genotype-phenotype Hypotheses (AIMHIGH) reveals novel disease-causing candidate genes

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