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Whole-Genome Phylogenetic Reconstruction as a Powerful Tool to Reveal Homoplasy and Ancient Rapid Radiation in Waterflea Evolution
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Quartet Sampling distinguishes lack of support from conflicting support in the green plant tree of life
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Using BUSCO to Assess Insect Genomic Resources
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Phylogeny and adaptive radiation within the Anomopoda: a preliminary exploration
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Morphology and the classification of the so-called Cladocera
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Congruence of Morphological and Molecular Phylogenies
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Global diversity of cladocerans (Cladocera; Crustacea) in freshwater
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Preface: Recent advances in Crustacean Genomics
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Comparison of phylogenetic trees
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Notes on the Physiology of Embryogenesis
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Morphological Phylogenetics in the Genomic Age
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Phylogenomic Insights into Animal Evolution
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The Phylogeny and Evolutionary History of Arthropods
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Fossil calibrations for the arthropod Tree of Life
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The fossil record of the Cladocera (Crustacea: Branchiopoda): Evidence and hypotheses
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Deciphering ancient rapid radiations
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Probing the relationships of the branchiopod crustaceans
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Anchored phylogenomics unravels the evolution of spider flies (Diptera, Acroceridae) and reveals discordance between nucleotides and amino acids
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A fossil-calibrated phylogenomic analysis of Daphnia and the Daphniidae
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A reclassification of the anomopod families Macrothricidae and Chydoridae, with the creation of a new suborder, the Radopoda (Crustacea: Branchiopoda)
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Phylogeny, evolution and classification of the Branchiopoda (Crustacea)
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Deep homology and the origins of evolutionary novelty
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Model selection may not be a mandatory step for phylogeny reconstruction
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Genome-wide interrogation advances resolution of recalcitrant groups in the tree of life
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Phylogenetic tree building in the genomic age
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Phylogenomics illuminates the backbone of the Myriapoda Tree of Life and reconciles morphological and molecular phylogenies
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Multiple historical processes obscure phylogenetic relationships in a taxonomically difficult group (Lobariaceae, Ascomycota)
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The evolutionary history of the Chydoridae (Crustacea: Cladocera)
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Phylogeny and adaptive radiation in the Onychopoda (Crustacea, Cladocera): evidence from multiple gene sequences
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Exceptionally preserved crustaceans from western Canada reveal a cryptic Cambrian radiation
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BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
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RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
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Here We Are, But Where Do We Go? A Systematic Review of Crustacean Transcriptomic Studies from 2014–2015
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A Phylogenomic Approach to Resolve the Arthropod Tree of Life
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The Effects of Partitioning on Phylogenetic Inference
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PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses
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BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics
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Phylogenomics Reveals Ancient Gene Tree Discordance in the Amphibian Tree of Life
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Sequence Capture Phylogenomics of True Spiders Reveals Convergent Evolution of Respiratory Systems
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PhyloBayes MPI: Phylogenetic Reconstruction with Infinite Mixtures of Profiles in a Parallel Environment
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Coalescent versus Concatenation Methods and the Placement of Amborella as Sister to Water Lilies
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Analysis of Phylogenomic Tree Space Resolves Relationships Among Marsupial Families
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To Include or Not to Include: The Impact of Gene Filtering on Species Tree Estimation Methods
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Resolving Deep Nodes in an Ancient Radiation of Neotropical Fishes in the Presence of Conflicting Signals from Incomplete Lineage Sorting
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Phylogenomics Uncovers Confidence and Conflict in the Rapid Radiation of Australo-Papuan Rodents
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Structural rRNA characters support monophyly of raptorial limbs and paraphyly of limb specialization in water fleas
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Linking genes to communities and ecosystems: Daphnia as an ecogenomic model
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Tetraconatan phylogeny with special focus on Malacostraca and Branchiopoda: highlighting the strength of taxon-specific matrices in phylogenomics
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Functional morphology and the adaptive radiation of the Daphniidae (Branchiopoda: Anomopoda)
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Phylogeny of Branchiopoda (Crustacea) based on a combined analysis of morphological data and six molecular loci
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A new classification of the branchiopod Crustacea
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A phylogenetic analysis of the Conchostraca and Cladocera (Crustacea, Branchiopoda, Diplostraca)
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The Cladocera (Crustacea: Branchiopoda) as a relict group
inferredcites →https://doi.org/10.1111/j.1096-3642.2008.00412.xopenalex-snapshot
A revision of the extinct Mesozoic family Prochydoridae Smirnov, 1992 (Crustacea: Cladocera) with a discussion of its phylogenetic position
inferredcites →https://doi.org/10.1111/syen.12363openalex-snapshot
Phylogenomic analysis resolves the relationships among net‐winged beetles (Coleoptera: Lycidae) and reveals the parallel evolution of morphological traits
inferredcites →https://doi.org/10.1126/science.1188545openalex-snapshot
Homoplasy: From Detecting Pattern to Determining Process and Mechanism of Evolution
inferredcites →https://doi.org/10.1126/science.1197761openalex-snapshot
The Ecoresponsive Genome of Daphnia pulex
inferredcites →https://doi.org/10.1163/156854099504004openalex-snapshot
A COMMENT ON A RECENT PHYLOGENETIC ANALYSIS OF CERTAIN ORDERS OF THE BRANCHIOPOD CRUSTACEA
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Major Revisions in Arthropod Phylogeny Through Improved Supermatrix, With Support for Two Possible Waves of Land Invasion by Chelicerates
inferredcites →https://doi.org/10.1186/s12859-018-2129-yopenalex-snapshot
ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
inferredcites →https://doi.org/10.1186/s12862-015-0423-0openalex-snapshot
Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants
inferredcites →https://doi.org/10.1186/s12862-017-0883-5openalex-snapshot
Phylogenomic analysis of Copepoda (Arthropoda, Crustacea) reveals unexpected similarities with earlier proposed morphological phylogenies
inferredcites →https://doi.org/10.1186/s13059-019-1925-7openalex-snapshot
Gene content evolution in the arthropods
inferredcites →https://doi.org/10.13140/2.1.3511.6489openalex-snapshot
Morphology and phylogeny of the Anomopoda (Crustacea: Cladocera)
inferredcites →https://doi.org/10.1371/journal.pcbi.1003537openalex-snapshot
BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
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The evolutionary transformation of phyllopodous to stenopodous limbs in the Branchiopoda (Crustacea)--is there a common mechanism for early limb development in arthropods?
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World checklist of freshwater Cladocera species
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Phylogeny of Branchiopoda (Crustacea) - Character Evolution and Contribution of Uniquely Preserved Fossils
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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A rapid and parallel Late Pleistocene/Holocene morphological radiation in a predaceous planktonic water flea: the case of Bythotrephes (Cladocera: Cercopagididae)
inferred← citeshttps://doi.org/10.11646/zootaxa.5343.1.6zenodo-depositor-declared
Identification of ancient Cladocera-like fossils requires homologies: The Jurassic Kuqaia is not a Waterflea
inferred← citeshttps://doi.org/10.1590/s1984-4689.v40.e23020zenodo-depositor-declared
Taxonomic Catalog of the Brazilian Fauna: Superorder Cladocera (Crustacea: Branchiopoda), taxonomic history, diversity and distribution
inferred← citeshttps://doi.org/10.3897/zookeys.1249.154922zenodo-depositor-declared
Revision of Lathonura rectirostris (O.F. Müller, 1785) (Anomopoda, Macrothricidae) leads to translocation of East Asian populations to a separate species, Lathonura bekkerae sp. nov.
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Moina heilongjiangensis sp. nov. (Crustacea, Cladocera) from the northeast of China
inferred← citeshttps://doi.org/10.5852/ejt.2022.821.1797zenodo-depositor-declared
A new species of Acantholeberis (Crustacea, Branchiopoda) suggests an ancient geographic distribution of the genus in South America
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Revision of Drepanothrix Sars, 1862 (Anomopoda: Macrothricidae), with the description of a new species from East Eurasia and discussion of the genus specific phylogenetic position and macrothricid paraphyly based on a mitogenome study
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Daphnia sp. (Branchiopoda: Cladocera) Mitochondrial Genome Gene Rearrangement and Phylogenetic Position Within Branchiopoda
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Genetic diversity, lineage divergence, and demography of Diaphanosoma dubium (Crustacea: Cladocera) on Hainan Island, China
inferred← citeshttps://doi.org/10.1007/s12549-023-00597-9openalex-snapshot
Revision of Lower Devonian clam shrimp (Branchiopoda, Diplostraca) from the Rhenish Massif (Eifel, SW-Germany), and the early colonization of non-marine palaeoenvironments
inferred← citeshttps://doi.org/10.1016/b978-0-12-821844-0.00010-7openalex-snapshot
Class Branchiopoda
inferred← citeshttps://doi.org/10.1016/j.aquatox.2023.106565openalex-snapshot
Chromosome-scale genome assembly of the freshwater cladoceran crustacean Chydorus sphaericus: A resource for discovery of genes responsive to ecological challenges
inferred← citeshttps://doi.org/10.1016/j.ecolmodel.2024.110721openalex-snapshot
The comparative energetics of branchiopods: Adaptations to volatile environments
inferred← citeshttps://doi.org/10.1016/j.ympev.2023.107969openalex-snapshot
Coupling DNA barcodes and exon-capture to resolve the phylogeny of Turridae (Gastropoda, Conoidea)
inferred← citeshttps://doi.org/10.1016/j.ympev.2025.108361openalex-snapshot
Phylogenomics provides new insight into the phylogeny and diversification of Asian Lappula (Boraginaceae)
inferred← citeshttps://doi.org/10.1038/s41597-025-06405-7openalex-snapshot
High-quality chromosome-level genome assembly of the snake Pseudoxenodon stejnegeri (Squamata: Colubridae)
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Embryogeny of Pleuroxus aduncus (Jurine, 1820) and Chydorus sphaericus S. Lato (Müller, 1776) indicate on conservative instars development among family Chydoridae (Crustacea, Cladocera, Anomopoda)
inferred← citeshttps://doi.org/10.1093/gbe/evae222openalex-snapshot
The Evolution of Extreme Genetic Variability in a Parasite-Resistance Complex
inferred← citeshttps://doi.org/10.1093/isd/ixaf019openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/jcbiol/ruae046openalex-snapshot
Current status of the systematics of large branchiopod crustaceans (Branchiopoda: Anostraca, Notostraca, Laevicaudata, Spinicaudata, Cyclestherida)
inferred← citeshttps://doi.org/10.1093/jcbiol/ruae054openalex-snapshot
The only terrestrial lineage in the Branchiopoda redefined: a new species of Bryospilus Frey, 1980 (Cladocera: Anomopoda) from India and adaptations of waterfleas to life on land
inferred← citeshttps://doi.org/10.1093/molbev/msac278openalex-snapshot
A Phylogenomic Assessment of Processes Underpinning Convergent Evolution in Open-Habitat Chats
inferred← citeshttps://doi.org/10.1093/sysbio/syaf075openalex-snapshot
Phylogenomics of a Genus of “Great Speciators” Reveals Rampant Incomplete Lineage Sorting, Gene Flow, and Mitochondrial Discordance in Island Systems
inferred← citeshttps://doi.org/10.1093/sysbio/syaf077openalex-snapshot
Whole Genomes Illuminate the Drivers of Gene Tree Discordance and the Tempo of Tinamou Diversification (Aves: Tinamidae)
inferred← citeshttps://doi.org/10.1098/rsbl.2025.0130openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2022.06.21.496980openalex-snapshot
A Phylogenomic Assessment of Processes Underpinning Convergent Evolution in Open-Habitat Chats
inferred← citeshttps://doi.org/10.1101/2024.08.09.607325openalex-snapshot
The Evolution of Extreme Genetic Variability in a Parasite-Resistance Complex in a Planktonic Crustacean
inferred← citeshttps://doi.org/10.1101/2024.08.28.610082openalex-snapshot
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inferred← citeshttps://doi.org/10.1163/15685403-bja10236openalex-snapshot
Embryogeny of Bosmina longirostris (O. F. Müller, 1785) (Bosminidae) confirms a close relationship to the superfamily Eurycercoidea (Branchiopoda, Cladocera, Anomopoda)
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Universal orthologs infer deep phylogenies and improve genome quality assessments
inferred← citeshttps://doi.org/10.1186/s13227-022-00199-0openalex-snapshot
Daphnia as a versatile model system in ecology and evolution
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Genome Assembly of a Relict Arabian Species of Daphnia O. F. Müller (Crustacea: Cladocera) Adapted to the Desert Life
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