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Exon-based Phylogenomics and the Relationships of African Cichlid Fishes: Tackling the Challenges of Reconstructing Phylogenies with Repeated Rapid Radiations
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Total evidence: Molecules, morphology, and the phylogenetics of cichlid fishes
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Comparison of taxon‐specific versus general locus sets for targeted sequence capture in plant phylogenomics
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Gene markers for exon capture and phylogenomics in ray‐finned fishes
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Don't throw out the sympatric speciation with the crater lake water: fine-scale investigation of introgression provides equivocal support for causal role of secondary gene flow in one of the clearest examples of sympatric speciation
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Colour diversification in Malawi cichlids: evidence for adaptation, reinforcement or sexual selection?
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Evolution of NADH Dehydrogenase Subunit 2 in East African Cichlid Fish
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Lake Tanganyika as an evolutionary reservoir of old lineages of East African cichlid fishes: Inferences from allozyme data
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Mitochondrial DNA Phylogeny of the Family Cichlidae: Monophyly and Fast Molecular Evolution of the Neotropical Assemblage
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Comparative Phylogenetic Analyses of the Adaptive Radiation of Lake Tanganyika Cichlid Fish: Nuclear Sequences Are Less Homoplasious But Also Less Informative Than Mitochondrial DNA
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Systematics of Tanganyikan cichlid fishes (Teleostei: Perciformes)
inferredcites →https://doi.org/10.1007/s10592-013-0551-2openalex-snapshot
Genetic and morphological analyses indicate high population mixing in the endangered cichlid Alcolapia flock of East Africa
inferredcites →https://doi.org/10.1007/s10750-014-1918-1openalex-snapshot
Phylogeny and age of chromidotilapiine cichlids (Teleostei: Cichlidae)
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Gondwanan vicariance or trans-Atlantic dispersal of cichlid fishes: a review of the molecular evidence
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Comparison of phylogenetic trees
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Adaptive radiation of cichlid fish
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Convergent Evolution within an Adaptive Radiation of Cichlid Fishes
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A proposed drainage evolution model for Central Africa—Did the Congo flow east?
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Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: A model
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Likelihood-based tree reconstruction on a concatenation of aligned sequence data sets can be statistically inconsistent
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Deciphering ancient rapid radiations
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Gene tree discordance, phylogenetic inference and the multispecies coalescent
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Rapid radiation, ancient incomplete lineage sorting and ancient hybridization in the endemic Lake Tanganyika cichlid tribe Tropheini
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Multilocus phylogeny of Crenicichla (Teleostei: Cichlidae), with biogeography of the C. lacustris group: Species flocks as a model for sympatric speciation in rivers
inferredcites →https://doi.org/10.1016/j.ympev.2013.03.015openalex-snapshot
Molecular phylogeny and revised classification of the haplotilapiine cichlid fishes formerly referred to as “Tilapia”
inferredcites →https://doi.org/10.1016/j.ympev.2014.01.011openalex-snapshot
Continental monophyly of cichlid fishes and the phylogenetic position of Heterochromis multidens
inferredcites →https://doi.org/10.1016/j.ympev.2014.08.006openalex-snapshot
Should genes with missing data be excluded from phylogenetic analyses?
inferredcites →https://doi.org/10.1016/j.ympev.2014.08.013openalex-snapshot
Phylogenetic analysis at deep timescales: Unreliable gene trees, bypassed hidden support, and the coalescence/concatalescence conundrum
inferredcites →https://doi.org/10.1016/j.ympev.2014.10.009openalex-snapshot
A tribal level phylogeny of Lake Tanganyika cichlid fishes based on a genomic multi-marker approach
inferredcites →https://doi.org/10.1016/j.ympev.2016.04.012openalex-snapshot
A robust phylogeny among major lineages of the East African cichlids
inferredcites →https://doi.org/10.1016/j.ympev.2017.10.008openalex-snapshot
Exon-based phylogenomics strengthens the phylogeny of Neotropical cichlids and identifies remaining conflicting clades (Cichliformes: Cichlidae: Cichlinae)
inferredcites →https://doi.org/10.1016/j.ympev.2019.04.008openalex-snapshot
Molecular phylogeny of Oreochromis (Cichlidae: Oreochromini) reveals mito-nuclear discordance and multiple colonisation of adverse aquatic environments
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Basic Local Alignment Search Tool
inferredcites →https://doi.org/10.1038/368629a0openalex-snapshot
Sympatric speciation suggested by monophyly of crater lake cichlids
inferredcites →https://doi.org/10.1038/nature03489openalex-snapshot
An extant cichlid fish radiation emerged in an extinct Pleistocene lake
inferredcites →https://doi.org/10.1038/nature11144openalex-snapshot
Ecological opportunity and sexual selection together predict adaptive radiation
inferredcites →https://doi.org/10.1038/nature13726openalex-snapshot
The genomic substrate for adaptive radiation in African cichlid fish
inferredcites →https://doi.org/10.1038/ncomms14363openalex-snapshot
Ancient hybridization fuels rapid cichlid fish adaptive radiations
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/nrg1316openalex-snapshot
Adaptive evolution and explosive speciation: the cichlid fish model
inferredcites →https://doi.org/10.1038/s41467-018-05479-9openalex-snapshot
Phylogenomics uncovers early hybridization and adaptive loci shaping the radiation of Lake Tanganyika cichlid fishes
inferredcites →https://doi.org/10.1038/s41467-019-08822-wopenalex-snapshot
Model selection may not be a mandatory step for phylogeny reconstruction
inferredcites →https://doi.org/10.1038/s41467-020-17827-9openalex-snapshot
The genomic timeline of cichlid fish diversification across continents
inferredcites →https://doi.org/10.1038/s41559-018-0717-xopenalex-snapshot
Whole-genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow
inferredcites →https://doi.org/10.1038/s41559-022-01801-3openalex-snapshot
Prolonged morphological expansion of spiny-rayed fishes following the end-Cretaceous
inferredcites →https://doi.org/10.1038/s41576-018-0043-9openalex-snapshot
Understanding explosive diversification through cichlid fish genomics
inferredcites →https://doi.org/10.1038/s41586-020-2652-7openalex-snapshot
The ecological and genomic basis of explosive adaptive radiation
inferredcites →https://doi.org/10.1038/s41586-020-2930-4openalex-snapshot
Drivers and dynamics of a massive adaptive radiation in cichlid fishes
inferredcites →https://doi.org/10.1046/j.1365-2540.1998.00347.xopenalex-snapshot
Phylogeny of African cichlid fishes as revealed by molecular markers
inferredcites →https://doi.org/10.1073/pnas.1304661110openalex-snapshot
Phylogeny and tempo of diversification in the superradiation of spiny-rayed fishes
inferredcites →https://doi.org/10.1073/pnas.1407950111openalex-snapshot
Maximum likelihood inference of reticulate evolutionary histories
inferredcites →https://doi.org/10.1073/pnas.1611028113openalex-snapshot
Environmental change explains cichlid adaptive radiation at Lake Malawi over the past 1.2 million years
inferredcites →https://doi.org/10.1073/pnas.1719358115openalex-snapshot
Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data
inferredcites →https://doi.org/10.1073/pnas.1913534116openalex-snapshot
Hybridization increases population variation during adaptive radiation
inferredcites →https://doi.org/10.1080/00222938700770811openalex-snapshot
Cichlid familial intrarelationships and the placement of the neotropical genus Cichla (Perciformes, Labroidei)
inferredcites →https://doi.org/10.1080/106351502753475907openalex-snapshot
Phylogeny of the Lake Tanganyika Cichlid Species Flock and Its Relationship to the Central and East African Haplochromine Cichlid Fish Faunas
inferredcites →https://doi.org/10.1080/10635150490445779openalex-snapshot
Modeling Compositional Heterogeneity
inferredcites →https://doi.org/10.1080/10635150601146041openalex-snapshot
Inconsistency of Phylogenetic Estimates from Concatenated Data under Coalescence
inferredcites →https://doi.org/10.1093/bioinformatics/btp079openalex-snapshot
STEM: species tree estimation using maximum likelihood for gene trees under coalescence
inferredcites →https://doi.org/10.1093/bioinformatics/btp163openalex-snapshot
Biopython: freely available Python tools for computational molecular biology and bioinformatics
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btq706openalex-snapshot
phangorn: phylogenetic analysis in R
inferredcites →https://doi.org/10.1093/bioinformatics/btr026openalex-snapshot
Quality control and preprocessing of metagenomic datasets
inferredcites →https://doi.org/10.1093/bioinformatics/bts199openalex-snapshot
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
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ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes
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ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
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IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
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New Methods to Calculate Concordance Factors for Phylogenomic Datasets
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Age of Cichlids: New Dates for Ancient Lake Fish Radiations
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PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses
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Origins of Shared Genetic Variation in African Cichlids
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IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
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The Impact of Missing Data on Species Tree Estimation
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Mapping Phylogenetic Trees to Reveal Distinct Patterns of Evolution
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PhyloNetworks: A Package for Phylogenetic Networks
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Ancestral Hybridization Facilitated Species Diversification in the Lake Malawi Cichlid Fish Adaptive Radiation
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MUSCLE: multiple sequence alignment with high accuracy and high throughput
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Entrez Gene: gene-centered information at NCBI
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Entrez Gene: gene-centered information at NCBI
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Phylogenetic Relationships and Ancient Incomplete Lineage Sorting Among Cichlid Fishes in Lake Tanganyika as Revealed by Analysis of the Insertion of Retroposons
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Multilocus Phylogeny of Chichlid Fishes (Pisces: Perciformes): Evolutionary Comparison of Microsatellite and Single-Copy Nuclear Loci
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Phylogenetic analysis of cichlid fishes using nuclear DNA markers.
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Disentangling Sources of Gene Tree Discordance in Phylogenomic Data Sets: Testing Ancient Hybridizations in Amaranthaceae s.l
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The Perfect Storm: Gene Tree Estimation Error, Incomplete Lineage Sorting, and Ancient Gene Flow Explain the Most Recalcitrant Ancient Angiosperm Clade, Malpighiales
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Identifying Hybridization Events in the Presence of Coalescence via Model Selection
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Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales
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Anchored Hybrid Enrichment for Massively High-Throughput Phylogenomics
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The Evolution of Pharyngognathy: A Phylogenetic and Functional Appraisal of the Pharyngeal Jaw Key Innovation in Labroid Fishes and Beyond
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Evaluating Summary Methods for Multilocus Species Tree Estimation in the Presence of Incomplete Lineage Sorting
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On the Robustness to Gene Tree Estimation Error (or lack thereof) of Coalescent-Based Species Tree Methods
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Inconsistency of Species Tree Methods under Gene Flow
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Disentangling Incomplete Lineage Sorting and Introgression to Refine Species-Tree Estimates for Lake Tanganyika Cichlid Fishes
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Bayesian Phylogenetic Estimation of Clade Ages Supports Trans-Atlantic Dispersal of Cichlid Fishes
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Reconstructing labroid evolution with single–copy nuclear DNA
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African cichlid fish: a model system in adaptive radiation research
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Repeated trans-watershed hybridization among haplochromine cichlids (Cichlidae) was triggered by Neogene landscape evolution
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Molecular and fossil evidence place the origin of cichlid fishes long after Gondwanan rifting
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Continental cichlid radiations: functional diversity reveals the role of changing ecological opportunity in the Neotropics
inferredcites →https://doi.org/10.1098/rspb.2017.1762openalex-snapshot
Island- and lake-like parallel adaptive radiations replicated in rivers
inferredcites →https://doi.org/10.1101/gr.074492.107openalex-snapshot
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
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Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers
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Using genomic data to unravel the root of the placental mammal phylogeny
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A targeted next‐generation sequencing toolkit for exon‐based cichlid phylogenomics
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treespace : Statistical exploration of landscapes of phylogenetic trees
inferredcites →https://doi.org/10.1111/evo.12038openalex-snapshot
TESTING FOR ANCIENT ADAPTIVE RADIATIONS IN NEOTROPICAL CICHLID FISHES
inferredcites →https://doi.org/10.1111/evo.12674openalex-snapshot
Complex histories of repeated gene flow in Cameroon crater lake cichlids cast doubt on one of the clearest examples of sympatric speciation
inferredcites →https://doi.org/10.1111/evo.13072openalex-snapshot
Niche divergence facilitated by fine‐scale ecological partitioning in a recent cichlid fish adaptive radiation
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The fossil record and biogeography of the Cichlidae (Actinopterygii: Labroidei)
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Phylogeny and biogeography of cichlid fishes (Teleostei: Perciformes: Cichlidae)
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Phylogeny, taxonomy, and evolution of Neotropical cichlids (Teleostei: Cichlidae: Cichlinae)
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Cichlid jaw mechanics: linking morphology to feeding specialization
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Speciation within genomic networks: a case study based onSteatocranuscichlids of the lower Congo rapids
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IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?
inferredcites →https://doi.org/10.1111/jse.12160openalex-snapshot
Coalescent methods for estimating species trees from phylogenomic data
inferredcites →https://doi.org/10.1111/mec.13247openalex-snapshot
High levels of interspecific gene flow in an endemic cichlid fish adaptive radiation from an extreme lake environment
inferredcites →https://doi.org/10.1111/mec.13973openalex-snapshot
Genomewide SNP data reveal cryptic phylogeographic structure and microallopatric divergence in a rapids‐adapted clade of cichlids from the Congo River
inferredcites →https://doi.org/10.1111/mec.15217openalex-snapshot
Evolution of the visual sensory system in cichlid fishes from crater lake Barombi Mbo in Cameroon
inferredcites →https://doi.org/10.1111/nph.13450openalex-snapshot
Process and pattern in cichlid radiations – inferences for understanding unusually high rates of evolutionary diversification
inferredcites →https://doi.org/10.1126/science.1253451openalex-snapshot
Whole-genome analyses resolve early branches in the tree of life of modern birds
inferredcites →https://doi.org/10.1137/141000671openalex-snapshot
Julia: A Fresh Approach to Numerical Computing
inferredcites →https://doi.org/10.1155/2012/574851openalex-snapshot
The Impact of the Geologic History and Paleoclimate on the Diversification of East African Cichlids
inferredcites →https://doi.org/10.1186/1471-2148-10-149openalex-snapshot
Genetic isolation and morphological divergence mediated by high-energy rapids in two cichlid genera from the lower Congo rapids
inferredcites →https://doi.org/10.1186/1471-2148-5-17openalex-snapshot
Out of Tanganyika: Genesis, explosive speciation, key-innovations and phylogeography of the haplochromine cichlid fishes
inferredcites →https://doi.org/10.1186/1471-2148-7-7openalex-snapshot
Reticulate phylogeny of gastropod-shell-breeding cichlids from Lake Tanganyika – the result of repeated introgressive hybridization
inferredcites →https://doi.org/10.1186/1471-2148-9-186openalex-snapshot
The root of the East African cichlid radiations
inferredcites →https://doi.org/10.1186/1471-2164-16-s10-s1openalex-snapshot
Phylogenomic species tree estimation in the presence of incomplete lineage sorting and horizontal gene transfer
inferredcites →https://doi.org/10.1186/1742-9994-1-5openalex-snapshot
Reticulate sympatric speciation in Cameroonian crater lake cichlids
inferredcites →https://doi.org/10.1186/preaccept-1517039684139971openalex-snapshot
Hybridisation and diversification in the adaptive radiation of clownfishes
inferredcites →https://doi.org/10.1186/s12859-018-2129-yopenalex-snapshot
ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
inferredcites →https://doi.org/10.1186/s12862-015-0348-7openalex-snapshot
Selection towards different adaptive optima drove the early diversification of locomotor phenotypes in the radiation of Neotropical geophagine cichlids
inferredcites →https://doi.org/10.1186/s12862-015-0415-0openalex-snapshot
Are 100 enough? Inferring acanthomorph teleost phylogeny using Anchored Hybrid Enrichment
inferredcites →https://doi.org/10.1186/s12862-017-0958-3openalex-snapshot
Phylogenetic classification of bony fishes
inferredcites →https://doi.org/10.1186/s12862-019-1417-0openalex-snapshot
East African cichlid lineages (Teleostei: Cichlidae) might be older than their ancient host lakes: new divergence estimates for the east African cichlid radiation
inferredcites →https://doi.org/10.1186/s12864-018-4619-8openalex-snapshot
The performance of coalescent-based species tree estimation methods under models of missing data
inferredcites →https://doi.org/10.1371/currents.tol.53ba26640df0ccaee75bb165c8c26288openalex-snapshot
The Tree of Life and a New Classification of Bony Fishes
inferredcites →https://doi.org/10.1371/journal.pbio.1002224openalex-snapshot
The Dynamics of Incomplete Lineage Sorting across the Ancient Adaptive Radiation of Neoavian Birds
inferredcites →https://doi.org/10.1371/journal.pgen.1002660openalex-snapshot
The Probability of a Gene Tree Topology within a Phylogenetic Network with Applications to Hybridization Detection
inferredcites →https://doi.org/10.1371/journal.pgen.1005896openalex-snapshot
Inferring Phylogenetic Networks with Maximum Pseudolikelihood under Incomplete Lineage Sorting
inferredcites →https://doi.org/10.1371/journal.pone.0001730openalex-snapshot
Tempo and Mode of Diversification of Lake Tanganyika Cichlid Fishes
inferredcites →https://doi.org/10.1371/journal.pone.0022380openalex-snapshot
Time and Origin of Cichlid Colonization of the Lower Congo Rapids
inferredcites →https://doi.org/10.1371/journal.pone.0071162openalex-snapshot
Temporal Patterns of Diversification across Global Cichlid Biodiversity (Acanthomorpha: Cichlidae)
inferredcites →https://doi.org/10.1371/journal.pone.0125043openalex-snapshot
Lake Tanganyika—A 'Melting Pot' of Ancient and Young Cichlid Lineages (Teleostei: Cichlidae)?
inferredcites →https://doi.org/10.1671/0272-4634(2000)020[0651:ecffte]2.0.co;2openalex-snapshot
Eocene cichlid fishes from Tanzania, East Africa
inferredcites →https://doi.org/10.2144/000114039openalex-snapshot
Capturing Protein-Coding Genes Across Highly Divergent Species
inferredcites →https://doi.org/10.2307/2412923openalex-snapshot
Cases in which Parsimony or Compatibility Methods Will be Positively Misleading
inferredcites →https://doi.org/10.48550/arxiv.1303.3997openalex-snapshot
Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM
inferredcites →https://doi.org/10.5962/bhl.title.123198openalex-snapshot
Tilapiine fishes of the genera Sarotherodon, Oreochromis, and Danakilia /
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Genetic and morphological analysis of Herichthys pantostictus (Cichliformes: Cichlidae) populations that showed mitochondrial DNA introgression
inferred← citeshttps://doi.org/10.2139/ssrn.4774113openalex-extracted
Phylogenomics Reveal Species Limits and Relationships in the Narrow-Range Endemic Lycian Salamanders
inferred← citeshttps://doi.org/10.3897/bdj.12.e130707zenodo-depositor-declared
African cichlid fishes: morphological data and taxonomic insights from a genus-level survey of supraneurals, pterygiophores, and vertebral counts (Ovalentaria, Blenniiformes, Cichlidae, Pseudocrenilabrinae)
inferred← citeshttps://doi.org/10.3897/zookeys.1184.107091zenodo-depositor-declared
Comparison of seven complete mitochondrial genomes from Lamprologus and Neolamprologus (Chordata, Teleostei, Perciformes) and the phylogenetic implications for Cichlidae
inferred← citeshttps://doi.org/10.1002/advs.202417251openalex-snapshot
Patterns and Processes of Genomic Evolution Inferred From the Ten Smallest Vertebrate Genomes
inferred← citeshttps://doi.org/10.1007/s10750-022-05060-yopenalex-snapshot
Molecular phylogeny and taxonomic revision of the cichlid genus Hemichromis (Teleostei, Cichliformes, Cichlidae), with description of a new genus and revalidation of H. angolensis
inferred← citeshttps://doi.org/10.1016/b978-0-443-16009-7.00011-6openalex-snapshot
Hormonally derived sex pheromones in fishes
inferred← citeshttps://doi.org/10.1016/j.yhbeh.2025.105820openalex-snapshot
Changes in steroid hormone levels based on a plastic behavioral role in two biparental cichlids, Julidochromis transcriptus and Julidochromis marlieri: A test of the Ancestral Modulation Hypothesis
inferred← citeshttps://doi.org/10.1016/j.ympev.2023.107965openalex-snapshot
Disentangling historical relationships within Poeciliidae (Teleostei: Cyprinodontiformes) using ultraconserved elements
inferred← citeshttps://doi.org/10.1016/j.ympev.2024.108205openalex-snapshot
Phylogenomics reveal species limits and inter-relationships in the narrow-range endemic lycian salamanders
inferred← citeshttps://doi.org/10.1016/j.ympev.2025.108451openalex-snapshot
Sink or swim: Phylogenomic analysis of Baikal sculpins reveals multiple transformations to pelagic, bathybenthic, and lotic ecomorphologies
inferred← citeshttps://doi.org/10.1016/j.ympev.2026.108581openalex-snapshot
The origin of cichlids: The controversial phylogenomics of the convict fish, Pholidichthys leucotaenia
inferred← citeshttps://doi.org/10.1073/pnas.2410934122openalex-snapshot
Phylogenetic networks empower biodiversity research
inferred← citeshttps://doi.org/10.1080/14772000.2026.2682841openalex-snapshot
African origin and Late Cretaceous divergence of the Middle American catfish Lacantunia enigmatica corroborated by a global mitogenome phylogeny
inferred← citeshttps://doi.org/10.1080/23802359.2025.2519212openalex-snapshot
Novel complete mitochondrial genomes of eight riverine Lamprologus species (Actinopterygii, Cichlidae) suggest in-situ speciation of the blind cichlid L. lethops in the lower Congo River
inferred← citeshttps://doi.org/10.1093/gbe/evae152openalex-snapshot
Diversity of Sex Chromosomes in Vertebrates: Six Novel Sex Chromosomes in Basal Haplochromines (Teleostei: Cichlidae)
inferred← citeshttps://doi.org/10.1093/gbe/evaf191openalex-snapshot
Before the East African Radiation: Sex Chromosome Systems in Basal Haplotilapiine Cichlids
inferred← citeshttps://doi.org/10.1093/icb/icae021openalex-snapshot
Impacts of Quaternary Climatic Changes on the Diversification of Riverine Cichlids in the Lower Congo River
inferred← citeshttps://doi.org/10.1093/isd/ixaf019openalex-snapshot
Exploring species delimitation of high-altitude flower bugs (Heteroptera: Anthocoridae) in the presence of complex reticulate evolution: the case of a biodiversity hotspot in the Qinghai–Tibet Plateau and surrounding mountains
inferred← citeshttps://doi.org/10.1093/molbev/msaf286openalex-snapshot
Seeing in the Deep: Evolution of the Opsin Gene Expression in Bermin Crater Lake Cichlids
inferred← citeshttps://doi.org/10.1093/sysbio/syad062openalex-snapshot
Introgression Underlies Phylogenetic Uncertainty But Not Parallel Plumage Evolution in a Recent Songbird Radiation
inferred← citeshttps://doi.org/10.1093/sysbio/syaf032openalex-snapshot
Phylogenomic and Population Genomic Analyses of Ultraconserved Elements Reveal Deep Coalescence and Introgression Shaped Diversification Patterns in Lamprologine Cichlids of the Congo River
inferred← citeshttps://doi.org/10.1098/rspb.2025.2825openalex-snapshot
Spatial impacts on gene flow may hinder linking phylogeographic data to macroevolutionary patterns
inferred← citeshttps://doi.org/10.1101/2024.09.11.612419openalex-snapshot
Complete mitochondrial genomes of riverine Lamprologus (Actinopterygii, Cichlidae) with an emphasis on the blind cichlid L. lethops
inferred← citeshttps://doi.org/10.1101/2025.05.13.653847openalex-snapshot
Replicated radiations reveal temporally structured macroevolutionary dynamics
inferred← citeshttps://doi.org/10.1101/2025.05.23.655800openalex-snapshot
Somitic Change Drives Changes in Vertebral Regionalisation in African Cichlids Despite Strong Canalisation of Somite Number
inferred← citeshttps://doi.org/10.1101/2025.11.04.686599openalex-snapshot
Spatially heterogeneous gene flow may hinder linking phylogeographic data to macroevolutionary patterns
inferred← citeshttps://doi.org/10.1111/mec.70038openalex-snapshot
Caves as Species Pumps: Key Innovations, Isolation and Periodic Introgression Drive the World's Largest Cavefish Radiation in a Dynamic Karstic Landscape
inferred← citeshttps://doi.org/10.1111/mec.70184openalex-snapshot
Phylogenomics Resolves Deep Phylogenetic Uncertainties and Hybridization in Rapidly Radiated Horseshoe Bats ( Rhinolophus )
inferred← citeshttps://doi.org/10.1266/ggs.23-00024openalex-snapshot
Ancient standing genetic variation facilitated the adaptive radiation of Lake Victoria cichlids
inferred← citeshttps://doi.org/10.3374/014.065.0101openalex-snapshot
Phylogenetic Classification of Living and Fossil Ray-Finned Fishes (Actinopterygii)
inferred← citeshttps://doi.org/10.3389/fgene.2024.1447628openalex-snapshot
Genome assemblies for Chromidotilapia guntheri (Teleostei: Cichlidae) identify a novel candidate gene for vertebrate sex determination, RIN3
inferred← citeshttps://doi.org/10.3390/genes14081591openalex-snapshot
Mitogenomic Characterization of Cameroonian Endemic Coptodon camerunensis (Cichliformes: Cichlidae) and Matrilineal Phylogeny of Old-World Cichlids
inferred← citeshttps://doi.org/10.64898/2026.01.30.702944openalex-snapshot
African origin and Late Cretaceous divergence of the Middle American catfish Lacantunia enigmatica corroborated by a global mitogenome phylogeny
inferred← citeshttps://doi.org/10.64898/2026.08.10.743750openalex-snapshot
Consequences of intra-locus recombination for branch-length-based inference of gene flow
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