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Lake Tanganyika—A 'Melting Pot' of Ancient and Young Cichlid Lineages (Teleostei: Cichlidae)?

https://doi.org/10.1371/journal.pone.0125043

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Explosive speciation in cichlid fishes of the African Great Lakes: a dynamic model of adaptive radiation

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Evolution of NADH Dehydrogenase Subunit 2 in East African Cichlid Fish

inferredcites →https://doi.org/10.1007/0-387-27733-1_7openalex-snapshot

Bayesian Analysis of Molecular Evolution Using MrBayes

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Evolution of the tribe Tropheini from Lake Tanganyika: synchronized explosive speciation producing multiple evolutionary parallelism

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Genetic diversity in European and Mediterranean faba bean germ plasm revealed by RAPD markers

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Evolutionary trees from DNA sequences: A maximum likelihood approach

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Lake Tanganyika as an evolutionary reservoir of old lineages of East African cichlid fishes: Inferences from allozyme data

inferredcites →https://doi.org/10.1007/pl00006514openalex-snapshot

Mitochondrial DNA Phylogeny of the Family Cichlidae: Monophyly and Fast Molecular Evolution of the Neotropical Assemblage

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Phylogenetic Relationships Among East African Haplochromine Fish as Revealed by Short Interspersed Elements (SINEs)

inferredcites →https://doi.org/10.1007/s00239-003-2527-1openalex-snapshot

Evolutionary Relationships in the Sand-Dwelling Cichlid Lineage of Lake Tanganyika Suggest Multiple Colonization of Rocky Habitats and Convergent Origin of Biparental Mouthbrooding

inferredcites →https://doi.org/10.1007/s00239-004-0017-8openalex-snapshot

Evolutionary Relationships of the Limnochromini, a Tribe of Benthic Deepwater Cichlid Fish Endemic to Lake Tanganyika, East Africa

inferredcites →https://doi.org/10.1007/s00239-004-0033-8openalex-snapshot

Ancient Divergence in Bathypelagic Lake Tanganyika Deepwater Cichlids: Mitochondrial Phylogeny of the Tribe Bathybatini

inferredcites →https://doi.org/10.1007/s00239-004-0217-2openalex-snapshot

Comparative Phylogenetic Analyses of the Adaptive Radiation of Lake Tanganyika Cichlid Fish: Nuclear Sequences Are Less Homoplasious But Also Less Informative Than Mitochondrial DNA

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Thermal and exhumation history of the central Rwenzori Mountains, Western Rift of the East African Rift System, Uganda

inferredcites →https://doi.org/10.1007/s00531-010-0560-zopenalex-snapshot

Middle Miocene to Pleistocene sedimentary record of rift evolution in the southern Albert Rift (Uganda)

inferredcites →https://doi.org/10.1007/s10228-003-0181-7openalex-snapshot

Systematics of Tanganyikan cichlid fishes (Teleostei: Perciformes)

inferredcites →https://doi.org/10.1007/s10750-008-9552-4openalex-snapshot

The Lake Tanganyika cichlid species assemblage: recent advances in molecular phylogenetics

inferredcites →https://doi.org/10.1016/0169-5347(91)90231-lopenalex-snapshot

Lake Tanganyika and its life

inferredcites →https://doi.org/10.1016/0305-4403(74)90030-2openalex-snapshot

Kalambo falls prehistoric site

inferredcites →https://doi.org/10.1016/b978-0-444-42903-2.50040-3openalex-snapshot

The structural and stratigraphic evolution of Lake Tanganyika: A case study of continental rifting

inferredcites →https://doi.org/10.1016/c2009-0-12457-1openalex-snapshot

Triassic-Jurassic Rifting - Continental Breakup and the Origin of the Atlantic Ocean and Passive Margins

inferredcites →https://doi.org/10.1016/j.cub.2010.11.029openalex-snapshot

Repeated colonization and hybridization in Lake Malawi cichlids

inferredcites →https://doi.org/10.1016/j.cub.2012.10.048openalex-snapshot

Convergent Evolution within an Adaptive Radiation of Cichlid Fishes

inferredcites →https://doi.org/10.1016/j.jafrearsci.2014.09.016openalex-snapshot

History of the development of the East African Rift System: A series of interpreted maps through time

inferredcites →https://doi.org/10.1016/j.tree.2004.01.003openalex-snapshot

Hybridization and adaptive radiation

inferredcites →https://doi.org/10.1016/j.ympev.2004.10.019openalex-snapshot

Mitochondrial phylogeny of the Cyprichromini, a lineage of open-water cichlid fishes endemic to Lake Tanganyika, East Africa

inferredcites →https://doi.org/10.1016/j.ympev.2005.04.023openalex-snapshot

Phylogenetic relationships of the lamprologine cichlid genus Lepidiolamprologus (Teleostei: Perciformes) based on mitochondrial and nuclear sequences, suggesting introgressive hybridization

inferredcites →https://doi.org/10.1016/j.ympev.2007.02.010openalex-snapshot

Evolutionary history of Lake Tanganyika’s scale-eating cichlid fishes

inferredcites →https://doi.org/10.1016/j.ympev.2008.10.009openalex-snapshot

Reciprocal Pleistocene origin and postglacial range formation of an allopolyploid and its sympatric ancestors (Androsace adfinis group, Primulaceae)

inferredcites →https://doi.org/10.1016/j.ympev.2009.09.032openalex-snapshot

Rapid radiation, ancient incomplete lineage sorting and ancient hybridization in the endemic Lake Tanganyika cichlid tribe Tropheini

inferredcites →https://doi.org/10.1016/j.ympev.2010.06.018openalex-snapshot

Evolutionary history of the Lake Tanganyika cichlid tribe Lamprologini (Teleostei: Perciformes) derived from mitochondrial and nuclear DNA data

inferredcites →https://doi.org/10.1016/j.ympev.2013.03.015openalex-snapshot

Molecular phylogeny and revised classification of the haplotilapiine cichlid fishes formerly referred to as “Tilapia”

inferredcites →https://doi.org/10.1016/j.ympev.2013.09.005openalex-snapshot

Outgroup effects on root position and tree topology in the AFLP phylogeny of a rapidly radiating lineage of cichlid fish

inferredcites →https://doi.org/10.1016/j.ympev.2014.10.009openalex-snapshot

A tribal level phylogeny of Lake Tanganyika cichlid fishes based on a genomic multi-marker approach

inferredcites →https://doi.org/10.1016/s0899-5362(89)80031-4openalex-snapshot

The geometry of rifting in Lake Tanganyika, East Africa

inferredcites →https://doi.org/10.1023/a:1024680201436openalex-snapshot

Evolution of the tribe Tropheini from Lake Tanganyika: synchronized explosive speciation producing multiple evolutionary parallelism

inferredcites →https://doi.org/10.1038/nature03489openalex-snapshot

An extant cichlid fish radiation emerged in an extinct Pleistocene lake

inferredcites →https://doi.org/10.1046/j.0962-1083.2001.01438.xopenalex-snapshot

Speciation via introgressive hybridization in East African cichlids?

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New palaeogeographic and lake‐level reconstructions of Lake Tanganyika: implications for tectonic, climatic and biological evolution in a rift lake

inferredcites →https://doi.org/10.1046/j.1365-2699.2001.00624.xopenalex-snapshot

Reconciling fossils and molecules: Cenozoic divergence of cichlid fishes and the biogeography of Madagascar

inferredcites →https://doi.org/10.1046/j.1365-294x.2001.01259.xopenalex-snapshot

Population structure in two sympatric species of the Lake Tanganyika cichlid tribe Eretmodini: evidence for introgression

inferredcites →https://doi.org/10.1073/pnas.0502127102openalex-snapshot

On the origin of Lake Malawi cichlid species: A population genetic analysis of divergence

inferredcites →https://doi.org/10.1080/00222938000770421openalex-snapshot

A revision of the largeBarbus(Pisces, Cyprinidae) of Lake Malawi with a reconstruction of the history of the southern African Rift Valley lakes

inferredcites →https://doi.org/10.1080/00222938700770811openalex-snapshot

Cichlid familial intrarelationships and the placement of the neotropical genus Cichla (Perciformes, Labroidei)

inferredcites →https://doi.org/10.1080/106351502753475907openalex-snapshot

Phylogeny of the Lake Tanganyika Cichlid Species Flock and Its Relationship to the Central and East African Haplochromine Cichlid Fish Faunas

inferredcites →https://doi.org/10.1080/10635150290069913openalex-snapshot

An Approximately Unbiased Test of Phylogenetic Tree Selection

inferredcites →https://doi.org/10.1080/10635150802429642openalex-snapshot

A Rapid Bootstrap Algorithm for the RAxML Web Servers

inferredcites →https://doi.org/10.1093/bioinformatics/10.5.569openalex-snapshot

TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment

inferredcites →https://doi.org/10.1093/bioinformatics/17.12.1246openalex-snapshot

CONSEL: for assessing the confidence of phylogenetic tree selection

inferredcites →https://doi.org/10.1093/bioinformatics/btg180openalex-snapshot

MrBayes 3: Bayesian phylogenetic inference under mixed models

inferredcites →https://doi.org/10.1093/bioinformatics/bti191openalex-snapshot

RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees

inferredcites →https://doi.org/10.1093/bioinformatics/btm619openalex-snapshot

Phyutility: a phyloinformatics tool for trees, alignments and molecular data

inferredcites →https://doi.org/10.1093/molbev/msg104openalex-snapshot

Using SINEs to Probe Ancient Explosive Speciation: "Hidden" Radiation of African Cichlids?

inferredcites →https://doi.org/10.1093/molbev/msj030openalex-snapshot

Application of Phylogenetic Networks in Evolutionary Studies

inferredcites →https://doi.org/10.1093/molbev/msj101openalex-snapshot

Nuclear Gene Variation and Molecular Dating of the Cichlid Species Flock of Lake Malawi

inferredcites →https://doi.org/10.1093/molbev/msm050openalex-snapshot

Age of Cichlids: New Dates for Ancient Lake Fish Radiations

inferredcites →https://doi.org/10.1093/molbev/msr121openalex-snapshot

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

inferredcites →https://doi.org/10.1093/molbev/msr183openalex-snapshot

Ancient Hybridization and Phenotypic Novelty within Lake Malawi's Cichlid Fish Radiation

inferredcites →https://doi.org/10.1093/molbev/mss326openalex-snapshot

Origins of Shared Genetic Variation in African Cichlids

inferredcites →https://doi.org/10.1093/nar/23.21.4407openalex-snapshot

AFLP: a new technique for DNA fingerprinting

inferredcites →https://doi.org/10.1093/oso/9780198585251.001.0001openalex-snapshot

Lake Tanganyika and its Life

inferredcites →https://doi.org/10.1093/oxfordjournals.afraf.a095976openalex-snapshot

Kalambo Falls : Prehistoric Site

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003747openalex-snapshot

Phylogenetic Relationships and Ancient Incomplete Lineage Sorting Among Cichlid Fishes in Lake Tanganyika as Revealed by Analysis of the Insertion of Retroposons

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a004144openalex-snapshot

What, if Anything, is a Tilapia?—Mitochondrial ND2 Phylogeny of Tilapiines and the Evolution of Parental Care Systems in the African Cichlid Fishes

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a004191openalex-snapshot

Mosaic Structure and Retropositional Dynamics During Evolution of Subfamilies of Short Interspersed Elements in African Cichlids

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025936openalex-snapshot

A novel family of short interspersed repetitive elements (SINEs) from cichlids: the patterns of insertion of SINEs at orthologous loci support the proposed monophyly of four major groups of cichlid fishes in Lake Tanganyika

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025985openalex-snapshot

Multilocus Phylogeny of Chichlid Fishes (Pisces: Perciformes): Evolutionary Comparison of Microsatellite and Single-Copy Nuclear Loci

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040042openalex-snapshot

Mitochondrial phylogeny of the endemic mouthbrooding lineages of cichlid fishes from Lake Tanganyika in eastern Africa.

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040148openalex-snapshot

Mitochondrial phylogeny of the Lamprologini, the major substrate spawning lineage of cichild fishes from Lake Tanganyika in eastern Africa.

inferredcites →https://doi.org/10.1098/rspb.2006.3539openalex-snapshot

African cichlid fish: a model system in adaptive radiation research

inferredcites →https://doi.org/10.1098/rspb.2006.3558openalex-snapshot

Adaptive radiation and hybridization in Wallace's Dreamponds: evidence from sailfin silversides in the Malili Lakes of Sulawesi

inferredcites →https://doi.org/10.1098/rspb.2012.1667openalex-snapshot

Repeated trans-watershed hybridization among haplochromine cichlids (Cichlidae) was triggered by Neogene landscape evolution

inferredcites →https://doi.org/10.1098/rspb.2013.1733openalex-snapshot

Molecular and fossil evidence place the origin of cichlid fishes long after Gondwanan rifting

inferredcites →https://doi.org/10.1099/ijs.0.045906-0openalex-snapshot

Streptomyces chlorus sp. nov. and Streptomyces viridis sp. nov., isolated from soil

inferredcites →https://doi.org/10.1111/j.1095-8312.2001.tb01409.xopenalex-snapshot

The fossil record and biogeography of the Cichlidae (Actinopterygii: Labroidei)

inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04348.xopenalex-snapshot

Complete mitochondrial DNA replacement in a Lake Tanganyika cichlid fish

inferredcites →https://doi.org/10.1111/j.1420-9101.2011.02409.xopenalex-snapshot

Speciation within genomic networks: a case study based onSteatocranuscichlids of the lower Congo rapids

inferredcites →https://doi.org/10.1126/science.1129158openalex-snapshot

Tectonic Uplift and Eastern Africa Aridification

inferredcites →https://doi.org/10.1126/science.240.4859.1645openalex-snapshot

Low Lake Stands in Lakes Malawi and Tanganyika, East Africa, Delineated with Multifold Seismic Data

inferredcites →https://doi.org/10.1130/0091-7613(1993)021<0511:etaofo>2.3.co;2openalex-snapshot

Estimating the age of formation of lakes: An example from Lake Tanganyika, East African Rift system

inferredcites →https://doi.org/10.1130/g23108a.1openalex-snapshot

Morphotectonic evolution of the central Kenya rift flanks: Implications for late Cenozoic environmental change in East Africa

inferredcites →https://doi.org/10.1155/2012/716209openalex-snapshot

Evolutionary History of Lake Tanganyika’s Predatory Deepwater Cichlids

inferredcites →https://doi.org/10.1155/2012/865603openalex-snapshot

Extensive Introgression among Ancestral mtDNA Lineages: Phylogenetic Relationships of the Utaka within the Lake Malawi Cichlid Flock

inferredcites →https://doi.org/10.1163/002829684x00281openalex-snapshot

A Taxonomic Reconsideration of the Haplochromine Genera Gaurochromis Greenwood, 1980 and Labrochromis Regan, 1920 (Pisces, Cichlidae)

inferredcites →https://doi.org/10.1177/1525822x0001200104openalex-snapshot

A Multidimensional Scaling Stress Evaluation Table

inferredcites →https://doi.org/10.1186/1471-2148-5-17openalex-snapshot

Out of Tanganyika: Genesis, explosive speciation, key-innovations and phylogeography of the haplochromine cichlid fishes

inferredcites →https://doi.org/10.1186/1471-2148-7-137openalex-snapshot

Nuclear and mitochondrial data reveal different evolutionary processes in the Lake Tanganyika cichlid genus Tropheus

inferredcites →https://doi.org/10.1186/1471-2148-7-195openalex-snapshot

Evolution of feeding specialization in Tanganyikan scale-eating cichlids: a molecular phylogenetic approach

inferredcites →https://doi.org/10.1186/1471-2148-7-7openalex-snapshot

Reticulate phylogeny of gastropod-shell-breeding cichlids from Lake Tanganyika – the result of repeated introgressive hybridization

inferredcites →https://doi.org/10.1186/1471-2148-8-215openalex-snapshot

Mitogenomic evaluation of the historical biogeography of cichlids toward reliable dating of teleostean divergences

inferredcites →https://doi.org/10.1186/1471-2148-9-186openalex-snapshot

The root of the East African cichlid radiations

inferredcites →https://doi.org/10.1186/1742-9994-1-5openalex-snapshot

Reticulate sympatric speciation in Cameroonian crater lake cichlids

inferredcites →https://doi.org/10.1306/61eedc1a-173e-11d7-8645000102c1865dopenalex-snapshot

Control of Normal Fault Interaction on the Distribution of Major Neogene Sedimentary Depocenters, Lake Tanganyika, East African Rift

inferredcites →https://doi.org/10.1371/journal.pone.0001730openalex-snapshot

Tempo and Mode of Diversification of Lake Tanganyika Cichlid Fishes

inferredcites →https://doi.org/10.1371/journal.pone.0022380openalex-snapshot

Time and Origin of Cichlid Colonization of the Lower Congo Rapids

inferredcites →https://doi.org/10.1371/journal.pone.0028775openalex-snapshot

Cryptic Diversity of African Tigerfish (Genus Hydrocynus) Reveals Palaeogeographic Signatures of Linked Neogene Geotectonic Events

inferredcites →https://doi.org/10.1371/journal.pone.0065047openalex-snapshot

Cichlid Fishes in the Angolan Headwaters Region: Molecular Evidence of the Ichthyofaunal Contact between the Cuanza and Okavango-Zambezi Systems

inferredcites →https://doi.org/10.1371/journal.pone.0071162openalex-snapshot

Temporal Patterns of Diversification across Global Cichlid Biodiversity (Acanthomorpha: Cichlidae)

inferredcites →https://doi.org/10.1525/california/9780520257214.001.0001openalex-snapshot

Cenozoic Mammals of Africa

inferredcites →https://doi.org/10.1525/california/9780520257214.003.0001openalex-snapshot

Tectonics and Geomorphology of Africa during the Phanerozoic

inferredcites →https://doi.org/10.2307/1439430openalex-snapshot

Exploration Hydrobiologique Du Lac Tanganyika (1946-1947)

inferredcites →https://doi.org/10.2307/1775673openalex-snapshot

The "Tanganyika Problem"

inferredcites →https://doi.org/10.2307/2286300openalex-snapshot

Exploratory Data Analysis.

inferredcites →https://doi.org/10.2307/2529486openalex-snapshot

Exploratory Data Analysis

inferredcites →https://doi.org/10.5282/edoc.15478openalex-snapshot

Revision of the substrate brooding “Tilapia (Tilapia Smith, 1840 and related taxa), (Teleostei: Perciformes: Cichlidae)

inferredcites →https://doi.org/10.5962/p.12612openalex-snapshot

A new species of cichlid fish from the Malagarasi Swamps and River (Tanzania, east Africa)

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Hemibates koningsi spec. nov: a new deep-water cichlid (Teleostei: Cichlidae) from Lake Tanganyika

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Multigene fossil-calibrated analysis of the African lampeyes (Cyprinodontoidei: Procatopodidae) reveals an early Oligocene origin and Neogene diversification driven by palaeogeographic and palaeoclimatic events

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Ancient hybridization fuels rapid cichlid fish adaptive radiations

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The coincidence of ecological opportunity with hybridization explains rapid adaptive radiation in Lake Mweru cichlid fishes

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Whole-genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow

inferred← citeshttps://doi.org/10.1038/s41576-018-0043-9openalex-snapshot

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New fossil cichlid from the middle Miocene of East Africa revealed as oldest known member of the Oreochromini

inferred← citeshttps://doi.org/10.1080/02724634.2017.1297819openalex-snapshot

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Exon-based Phylogenomics and the Relationships of African Cichlid Fishes: Tackling the Challenges of Reconstructing Phylogenies with Repeated Rapid Radiations

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Phylogenomic and Population Genomic Analyses of Ultraconserved Elements Reveal Deep Coalescence and Introgression Shaped Diversification Patterns in Lamprologine Cichlids of the Congo River

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Disentangling Incomplete Lineage Sorting and Introgression to Refine Species-Tree Estimates for Lake Tanganyika Cichlid Fishes

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The complex origins of mouth polymorphism in the Labeobarbus (Cypriniformes: Cyprinidae) of the Inkisi River basin (Lower Congo, DRC, Africa): insights from an integrative approach

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Spatial impacts on gene flow may hinder linking phylogeographic data to macroevolutionary patterns

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Spatially heterogeneous gene flow may hinder linking phylogeographic data to macroevolutionary patterns

inferred← citeshttps://doi.org/10.1111/1755-0998.12523openalex-snapshot

Testing the potential of DNA barcoding in vertebrate radiations: the case of the littoral cichlids (Pisces, Perciformes, Cichlidae) from Lake Tanganyika

inferred← citeshttps://doi.org/10.1111/2041-210x.12490openalex-snapshot

hext , a software supporting tree‐based screens for hybrid taxa in multilocus data sets, and an evaluation of the homoplasy excess test

inferred← citeshttps://doi.org/10.1111/mec.13838openalex-snapshot

Demographic modelling with whole‐genome data reveals parallel origin of similarPundamiliacichlid species after hybridization

inferred← citeshttps://doi.org/10.1111/mec.13927openalex-snapshot

Transcriptome‐based phylogeny of endemic Lake Baikal amphipod species flock: fast speciation accompanied by frequent episodes of positive selection

inferred← citeshttps://doi.org/10.1111/mec.16936openalex-snapshot

Vertebrate genomics and adaptation – Status and prospects in Africa

inferred← citeshttps://doi.org/10.1144/sp543-2022-243openalex-snapshot

The Mwesia Beds of northern Malawi in relation to the Tanganyika Problem

inferred← citeshttps://doi.org/10.1186/s12862-015-0507-xopenalex-snapshot

Molecular phylogenetics reveals convergent evolution in lower Congo River spiny eels

inferred← citeshttps://doi.org/10.1186/s12862-019-1417-0openalex-snapshot

East African cichlid lineages (Teleostei: Cichlidae) might be older than their ancient host lakes: new divergence estimates for the east African cichlid radiation

inferred← citeshttps://doi.org/10.1186/s12862-020-01602-xopenalex-snapshot

New haplochromine cichlid from the upper Miocene (9–10 MYA) of Central Kenya

inferred← citeshttps://doi.org/10.1186/s13071-016-1696-xopenalex-snapshot

Deep-water parasite diversity in Lake Tanganyika: description of two new monogenean species from benthopelagic cichlid fishes

inferred← citeshttps://doi.org/10.1266/ggs.23-00024openalex-snapshot

Ancient standing genetic variation facilitated the adaptive radiation of Lake Victoria cichlids

inferred← citeshttps://doi.org/10.1371/journal.pone.0132615openalex-snapshot

Correction: Lake Tanganyika—A 'Melting Pot' of Ancient and Young Cichlid Lineages (Teleostei: Cichlidae)?

inferred← citeshttps://doi.org/10.7717/peerj.3214openalex-snapshot

Relic populations of Fukomys mole-rats in Tanzania: description of two new species F. livingstoni sp. nov. and F. hanangensis sp. nov.

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