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Disentangling Incomplete Lineage Sorting and Introgression to Refine Species-Tree Estimates for Lake Tanganyika Cichlid Fishes

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Geology of the Malawi Rift: kinematic and tectonosedimentary background to the Chiwondo Beds, northern Malawi

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Evolution of NADH Dehydrogenase Subunit 2 in East African Cichlid Fish

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Lake Tanganyika as an evolutionary reservoir of old lineages of East African cichlid fishes: Inferences from allozyme data

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Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

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Evolutionary Relationships in the Sand-Dwelling Cichlid Lineage of Lake Tanganyika Suggest Multiple Colonization of Rocky Habitats and Convergent Origin of Biparental Mouthbrooding

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Evolutionary Relationships of the Limnochromini, a Tribe of Benthic Deepwater Cichlid Fish Endemic to Lake Tanganyika, East Africa

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Comparative Phylogenetic Analyses of the Adaptive Radiation of Lake Tanganyika Cichlid Fish: Nuclear Sequences Are Less Homoplasious But Also Less Informative Than Mitochondrial DNA

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Systematics of Tanganyikan cichlid fishes (Teleostei: Perciformes)

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Genetic population structure as indirect measure of dispersal ability in a Lake Tanganyika cichlid

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Repeated colonization and hybridization in Lake Malawi cichlids

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Convergent Evolution within an Adaptive Radiation of Cichlid Fishes

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Understanding the onset of hybrid speciation

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The genomics of organismal diversification illuminated by adaptive radiations

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Likelihood-based tree reconstruction on a concatenation of aligned sequence data sets can be statistically inconsistent

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Hybridization and adaptive radiation

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Age and spread of the haplochromine cichlid fishes in Africa

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Rapid radiation, ancient incomplete lineage sorting and ancient hybridization in the endemic Lake Tanganyika cichlid tribe Tropheini

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Evolutionary history of the Lake Tanganyika cichlid tribe Lamprologini (Teleostei: Perciformes) derived from mitochondrial and nuclear DNA data

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Molecular phylogeny and revised classification of the haplotilapiine cichlid fishes formerly referred to as “Tilapia”

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A tribal level phylogeny of Lake Tanganyika cichlid fishes based on a genomic multi-marker approach

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A robust phylogeny among major lineages of the East African cichlids

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Ecological opportunity and sexual selection together predict adaptive radiation

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The genomic substrate for adaptive radiation in African cichlid fish

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Evolution of Darwin’s finches and their beaks revealed by genome sequencing

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Rates of speciation and morphological evolution are correlated across the largest vertebrate radiation

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Mesoporous silicon sponge as an anti-pulverization structure for high-performance lithium-ion battery anodes

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The evolution of cichlid fish egg-spots is linked with a cis-regulatory change

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Adaptive evolution and explosive speciation: the cichlid fish model

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Phylogenomics and the reconstruction of the tree of life

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Speciation via introgressive hybridization in East African cichlids?

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New palaeogeographic and lake‐level reconstructions of Lake Tanganyika: implications for tectonic, climatic and biological evolution in a rift lake

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Population structure in two sympatric species of the Lake Tanganyika cichlid tribe Eretmodini: evidence for introgression

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On the origin of Lake Malawi cichlid species: A population genetic analysis of divergence

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Pleistocene desiccation in East Africa bottlenecked but did not extirpate the adaptive radiation of Lake Victoria haplochromine cichlid fishes

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Resolution of ray-finned fish phylogeny and timing of diversification

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Phylogeny and tempo of diversification in the superradiation of spiny-rayed fishes

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Maximum likelihood inference of reticulate evolutionary histories

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Continuous 1.3-million-year record of East African hydroclimate, and implications for patterns of evolution and biodiversity

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A new species of tilapiine cichlid from the Pliocene, Middle Awash, Ethiopia

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Difficulties in Detecting Hybridization

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Phylogeny of the Lake Tanganyika Cichlid Species Flock and Its Relationship to the Central and East African Haplochromine Cichlid Fish Faunas

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Inferring Phylogeny Despite Incomplete Lineage Sorting

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Inconsistency of Phylogenetic Estimates from Concatenated Data under Coalescence

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Detecting and Overcoming Systematic Errors in Genome-Scale Phylogenies

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A Statistical Approach for Distinguishing Hybridization and Incomplete Lineage Sorting

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Divergence with Genetic Exchange

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Fast and accurate short read alignment with Burrows–Wheeler transform

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Fast and accurate long-read alignment with Burrows–Wheeler transform

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A Likelihood Framework to Measure Horizontal Gene Transfer

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Bayesian Inference of Species Trees from Multilocus Data

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Ancient Hybridization and Phenotypic Novelty within Lake Malawi's Cichlid Fish Radiation

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PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

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Origins of Shared Genetic Variation in African Cichlids

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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

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The Relative Rate of Sympatric and Allopatric Speciation in Fishes: Tests Using DNA Sequence Divergence between Sister Species and among Clades

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The Ecology of Adaptive Radiation

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The Evolutionary Biology of the Threespine Stickleback

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The benthic fish community

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Mitochondrial phylogeny of the endemic mouthbrooding lineages of cichlid fishes from Lake Tanganyika in eastern Africa.

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Coalescent Histories on Phylogenetic Networks and Detection of Hybridization Despite Incomplete Lineage Sorting

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The Influence of Gene Flow on Species Tree Estimation: A Simulation Study

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Detecting the Anomaly Zone in Species Trees and Evidence for a Misleading Signal in Higher-Level Skink Phylogeny (Squamata: Scincidae).

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Bayesian Phylogenetic Estimation of Clade Ages Supports Trans-Atlantic Dispersal of Cichlid Fishes

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Geographical ancestry of Lake Malawi's cichlid fish diversity

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Nuclear markers reveal unexpected genetic variation and a Congolese-Nilotic origin of the Lake Victoria cichlid species flock

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Colour-assortative mating among populations ofTropheus moorii, a cichlid fish from Lake Tanganyika, East Africa

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African cichlid fish: a model system in adaptive radiation research

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Repeated trans-watershed hybridization among haplochromine cichlids (Cichlidae) was triggered by Neogene landscape evolution

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Molecular and fossil evidence place the origin of cichlid fishes long after Gondwanan rifting

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Replicated divergence in cichlid radiations mirrors a major vertebrate innovation

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New seismic stratigraphy and Late Tertiary history of the North Tanganyika Basin, East African Rift system, deduced from multichannel and high‐resolution reflection seismic data and piston core evidence

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The interaction of sexually and naturally selected traits in the adaptive radiations of cichlid fishes

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Hybridization and speciation

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Evolutionary history of the endemic Lake Tanganyika cichlid fish Tylochromis polylepis: a recent intruder to a mature adaptive radiation

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GENETIC DISTANCE BETWEEN SPECIES PREDICTS NOVEL TRAIT EXPRESSION IN THEIR HYBRIDS

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CALIBRATING DIVERGENCE TIMES ON SPECIES TREES VERSUS GENE TREES: IMPLICATIONS FOR SPECIATION HISTORY OF APHELOCOMA JAYS

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A novel primer set for multilocus phylogenetic inference in East African cichlid fishes

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Population genomic signatures of divergent adaptation, gene flow and hybrid speciation in the rapid radiation of L ake V ictoria cichlid fishes

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Origin of the Superflock of Cichlid Fishes from Lake Victoria, East Africa

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Major Ecological Transitions in Wild Sunflowers Facilitated by Hybridization

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Ancient hybridizations among the ancestral genomes of bread wheat

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Whole-genome analyses resolve early branches in the tree of life of modern birds

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Hybridization of Bird Species

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Late Pleistocene Desiccation of Lake Victoria and Rapid Evolution of Cichlid Fishes

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Genomic islands of speciation separate cichlid ecomorphs in an East African crater lake

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Estimating the age of formation of lakes: An example from Lake Tanganyika, East African Rift system

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High-Throughput Genomic Data in Systematics and Phylogenetics

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Ecology and Evolution of the African Great Lakes and Their Faunas

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Phylogenetic Insights on Adaptive Radiation

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PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships

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Out of Tanganyika: Genesis, explosive speciation, key-innovations and phylogeography of the haplochromine cichlid fishes

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Reticulate phylogeny of gastropod-shell-breeding cichlids from Lake Tanganyika – the result of repeated introgressive hybridization

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Using supernetworks to distinguish hybridization from lineage-sorting

inferredcites →https://doi.org/10.1186/1471-2148-8-215openalex-snapshot

Mitogenomic evaluation of the historical biogeography of cichlids toward reliable dating of teleostean divergences

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The root of the East African cichlid radiations

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A maximum pseudo-likelihood approach for phylogenetic networks

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The Tree of Life and a New Classification of Bony Fishes

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Bushes in the Tree of Life

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The Dynamics of Incomplete Lineage Sorting across the Ancient Adaptive Radiation of Neoavian Birds

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BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

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Bayesian Inference of Sampled Ancestor Trees for Epidemiology and Fossil Calibration

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Robust Demographic Inference from Genomic and SNP Data

inferredcites →https://doi.org/10.1371/journal.pgen.1005896openalex-snapshot

Inferring Phylogenetic Networks with Maximum Pseudolikelihood under Incomplete Lineage Sorting

inferredcites →https://doi.org/10.1371/journal.pone.0001730openalex-snapshot

Tempo and Mode of Diversification of Lake Tanganyika Cichlid Fishes

inferredcites →https://doi.org/10.1371/journal.pone.0071162openalex-snapshot

Temporal Patterns of Diversification across Global Cichlid Biodiversity (Acanthomorpha: Cichlidae)

inferredcites →https://doi.org/10.1371/journal.pone.0125043openalex-snapshot

Lake Tanganyika—A 'Melting Pot' of Ancient and Young Cichlid Lineages (Teleostei: Cichlidae)?

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How and Why Species Multiply

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Lizards in an Evolutionary Tree

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GENE TREE DISTRIBUTIONS UNDER THE COALESCENT PROCESS

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Lower pharyngeal jaw of a cichlid fish (Actinopterygii; Labroidei) from an early Oligocene site in the Fayum, Egypt

inferredcites →https://doi.org/10.1671/1858openalex-snapshot

Oreochromis lorenzoi, a new species of tilapiine cichlid from the late Miocene of central Italy

inferredcites →https://doi.org/10.2307/1446878openalex-snapshot

The Evolutionary Biology of the Threespine Stickleback

inferredcites →https://doi.org/10.2307/2405671openalex-snapshot

THE MAJOR FEATURES OF EVOLUTION

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The Evolutionary Biology of the Threespine Stickleback

inferredcites →https://doi.org/10.3389/fmars.2014.00053openalex-snapshot

New insights on early evolution of spiny-rayed fishes (Teleostei: Acanthomorpha)

inferredcites →https://doi.org/10.3897/vz.65.e31524openalex-snapshot

Phylogeny and historical biogeography of trans-Andean cichlid fishes (Teleostei: Cichlidae)

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How and why species multiply: the radiation of Darwin's finches

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The Major Features of Evolution

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Genomic Data Supports Reticulate Evolution in Whiptail Lizards from the Brazilian Caatinga

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Phylogenomic inference of the African tribe Monodoreae (Annonaceae) and taxonomic revision of Dennettia, Uvariodendron and Uvariopsis

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Comparative chloroplast genomes and phylogenetic analysis of Aquilegia

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Rapid generation of ecologically relevant behavioral novelty in experimental cichlid hybrids

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Phylogenomics of trophically diverse cichlids disentangles processes driving adaptive radiation and repeated trophic transitions

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Not out of the Mediterranean: Atlantic populations of the gorgonian Paramuricea clavata are a separate sister species under further lineage diversification

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The dynamics of introgression across an avian radiation

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Genomic markers confirm introgressive hybridization in Cichla (Teleostei) in an invaded coastal system

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Ecological Opportunity, Genetic Variation, and the Origins of African Cichlid Radiations

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Evolution in the Fast Lane: Diversity, Ecology, and Speciation of Cichlids in the Lower Congo River

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Population expansion, current and past gene flow in Gould’s petrel: implications for conservation

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Gondwanan vicariance or trans-Atlantic dispersal of cichlid fishes: a review of the molecular evidence

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The diverse prey spectrum of the Tanganyikan scale-eater Perissodus microlepis (Boulenger, 1898)

inferred← citeshttps://doi.org/10.1007/s10750-018-3798-2openalex-snapshot

An exploration of the links between parasites, trophic ecology, morphology, and immunogenetics in the Lake Tanganyika cichlid radiation

inferred← citeshttps://doi.org/10.1007/s10750-021-04560-7openalex-snapshot

Identification of a novel sex determining chromosome in cichlid fishes that acts as XY or ZW in different lineages

inferred← citeshttps://doi.org/10.1007/s10750-022-05092-4openalex-snapshot

Differences among reciprocal hybrids of Labeotropheus

inferred← citeshttps://doi.org/10.1007/s11692-022-09564-2openalex-snapshot

Morphological and Genetic Divergence in a Gill Monogenean Parasitizing Distant Cichlid Lineages of Lake Tanganyika: Cichlidogyrus nshomboi (Monogenea: Dactylogyridae) from Representatives of Boulengerochromini and Perissodini

inferred← citeshttps://doi.org/10.1016/j.biocon.2017.11.028openalex-snapshot

Biodiversity defrosted: unveiling non-compliant fish trade in ethnic food stores

inferred← citeshttps://doi.org/10.1016/j.cub.2019.08.076openalex-snapshot

Evolution of Termite Symbiosis Informed by Transcriptome-Based Phylogenies

inferred← citeshttps://doi.org/10.1016/j.gecco.2025.e03706openalex-snapshot

Ancient introgression shapes the evolutionary history of a California Channel Island relictual species, island oak (Quercus tomentella)

inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2020.05.248openalex-snapshot

Mitogenomic characterization and systematic placement of the Congo blind barb Caecobarbus geertsii (Cypriniformes: Cyprinidae)

inferred← citeshttps://doi.org/10.1016/j.jglr.2019.05.009openalex-snapshot

The taxonomic diversity of the cichlid fish fauna of ancient Lake Tanganyika, East Africa

inferred← citeshttps://doi.org/10.1016/j.tree.2019.02.008openalex-snapshot

A Combinatorial View on Speciation and Adaptive Radiation

inferred← citeshttps://doi.org/10.1016/j.ympev.2016.09.004openalex-snapshot

A novel multilocus phylogenetic estimation reveals unrecognized diversity in Asian horned toads, genus Megophrys sensu lato (Anura: Megophryidae)

inferred← citeshttps://doi.org/10.1016/j.ympev.2017.04.027openalex-snapshot

Epigean gammarids survived millions of years of severe climatic fluctuations in high latitude refugia throughout the Western Carpathians

inferred← citeshttps://doi.org/10.1016/j.ympev.2019.04.008openalex-snapshot

Molecular phylogeny of Oreochromis (Cichlidae: Oreochromini) reveals mito-nuclear discordance and multiple colonisation of adverse aquatic environments

inferred← citeshttps://doi.org/10.1016/j.ympev.2019.05.011openalex-snapshot

Using nuclear loci and allelic variation to disentangle the phylogeny of Phyllostachys (Poaceae, Bambusoideae)

inferred← citeshttps://doi.org/10.1016/j.ympev.2020.106878openalex-snapshot

Phylogenomic insights into the temporal-spatial divergence history, evolution of leaf habit and hybridization in Stachyurus (Stachyuraceae)

inferred← citeshttps://doi.org/10.1016/j.ympev.2022.107465openalex-snapshot

Gauging ages of tiger swallowtail butterflies using alternate SNP analyses

inferred← citeshttps://doi.org/10.1016/j.ympev.2022.107543openalex-snapshot

Interpreting phylogenetic conflict: Hybridization in the most speciose genus of lichen-forming fungi

inferred← citeshttps://doi.org/10.1016/j.ympev.2022.107581openalex-snapshot

Out of chaos: Phylogenomics of Asian Sonerileae

inferred← citeshttps://doi.org/10.1016/j.ympev.2023.107856openalex-snapshot

Delimitation and species discovery in the Profundulidae fish family: Using genetic, environmental and morphologic data to address taxonomic uncertainty

inferred← citeshttps://doi.org/10.1016/j.ympev.2023.107891openalex-snapshot

Phylogenetic discordance and integrative species delimitation in the Mammillaria haageana species complex (Cactaceae)

inferred← citeshttps://doi.org/10.1016/j.ympev.2024.108089openalex-snapshot

A new nuclear phylogeny of the tea family (Theaceae) unravels rapid radiations in genus Camellia

inferred← citeshttps://doi.org/10.1016/j.ympev.2024.108280openalex-snapshot

Genomic data support reticulate evolution in whiptail lizards from the Brazilian Caatinga

inferred← citeshttps://doi.org/10.1016/j.ympev.2025.108326openalex-snapshot

Phylogeny, species delimitation, and biogeographical history of Bredia

inferred← citeshttps://doi.org/10.1016/j.ympev.2025.108452openalex-snapshot

Phylogenetic reconstruction of African weakly electric fish (Campylomormyrus spp.) is suggestive of ancient introgression events

inferred← citeshttps://doi.org/10.1016/j.ympev.2025.108475openalex-snapshot

Phylogenomics insights into the evolution of pronotal leaf mimicry in Hierodulinae (Mantodea: Mantidae)

inferred← citeshttps://doi.org/10.1016/j.ympev.2026.108558openalex-snapshot

Ancient gene flow shapes phylogenetic discordance in a genus of wood-warblers (Aves: Parulidae: Leiothlypis)

inferred← citeshttps://doi.org/10.1038/ncomms14363openalex-snapshot

Ancient hybridization fuels rapid cichlid fish adaptive radiations

inferred← citeshttps://doi.org/10.1038/s41437-018-0064-3openalex-snapshot

Phylogeographic analysis suggests two origins for the riparian azalea Rhododendron indicum (L.) Sweet

inferred← citeshttps://doi.org/10.1038/s41467-018-05479-9openalex-snapshot

Phylogenomics uncovers early hybridization and adaptive loci shaping the radiation of Lake Tanganyika cichlid fishes

inferred← citeshttps://doi.org/10.1038/s41467-019-13278-zopenalex-snapshot

The coincidence of ecological opportunity with hybridization explains rapid adaptive radiation in Lake Mweru cichlid fishes

inferred← citeshttps://doi.org/10.1038/s41467-020-15099-xopenalex-snapshot

Stable species boundaries despite ten million years of hybridization in tropical eels

inferred← citeshttps://doi.org/10.1038/s41559-018-0717-xopenalex-snapshot

Whole-genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow

inferred← citeshttps://doi.org/10.1038/s41576-018-0043-9openalex-snapshot

Understanding explosive diversification through cichlid fish genomics

inferred← citeshttps://doi.org/10.1038/s41586-020-2487-2openalex-snapshot

Native American gene flow into Polynesia predating Easter Island settlement

inferred← citeshttps://doi.org/10.1038/s41598-019-46392-5openalex-snapshot

New fossil cichlid from the middle Miocene of East Africa revealed as oldest known member of the Oreochromini

inferred← citeshttps://doi.org/10.1038/s41598-019-52306-2openalex-snapshot

From taxonomic deflation to newly detected cryptic species: Hidden diversity in a widespread African squeaker catfish

inferred← citeshttps://doi.org/10.1038/s41598-019-56771-7openalex-snapshot

Molecular mechanisms underlying nuchal hump formation in dolphin cichlid, Cyrtocara moorii

inferred← citeshttps://doi.org/10.1038/s41598-020-78555-0openalex-snapshot

Evolutionary divergence of novel open reading frames in cichlids speciation

inferred← citeshttps://doi.org/10.1038/s41598-024-69755-zopenalex-snapshot

Preying on cyprinid snout warts (pearl organs) as a novel and peculiar habit in the Lake Malawi cichlid Docimodus evelynae

inferred← citeshttps://doi.org/10.1038/s42003-024-06347-7openalex-snapshot

Contrasting nidification behaviors facilitate diversification and colonization of the Music frogs under a changing paleoclimate

inferred← citeshttps://doi.org/10.1038/sdata.2016.132openalex-snapshot

Whole genome sequencing data and de novo draft assemblies for 66 teleost species

inferred← citeshttps://doi.org/10.1073/pnas.1611028113openalex-snapshot

Environmental change explains cichlid adaptive radiation at Lake Malawi over the past 1.2 million years

inferred← citeshttps://doi.org/10.1073/pnas.1614272113openalex-snapshot

Environmental context for understanding the iconic adaptive radiation of cichlid fishes in Lake Malawi

inferred← citeshttps://doi.org/10.1073/pnas.2121819119openalex-snapshot

Genomic insights into zokors’ phylogeny and speciation in China

inferred← citeshttps://doi.org/10.1073/pnas.2201040119openalex-snapshot

Radiation and hybridization underpin the spread of the fire ant social supergene

inferred← citeshttps://doi.org/10.1093/biolinnean/blab090openalex-snapshot

Molecular phylogeny for the Neotropical freshwater stingrays (Myliobatiformes: Potamotrygoninae) reveals limitations of traditional taxonomy

inferred← citeshttps://doi.org/10.1093/botlinnean/boag025openalex-snapshot

Phylogenetic investigation and taxonomic revision of the subgenus Anguinum ( Allium , Amaryllidaceae) using multi-omics data

inferred← citeshttps://doi.org/10.1093/botlinnean/box094openalex-snapshot

Genetic variability and population structure of Passiflora contracta, a bat-pollinated species from a fragmented rainforest

inferred← citeshttps://doi.org/10.1093/evlett/qrae035openalex-snapshot

Genomic patterns in the dwarf kingfishers of northern Melanesia reveal a mechanistic framework explaining the paradox of the great speciators

inferred← citeshttps://doi.org/10.1093/evolut/qpae174openalex-snapshot

Contact zones reveal restricted introgression despite frequent hybridization across a recent lizard radiation

inferred← citeshttps://doi.org/10.1093/gbe/evac051openalex-snapshot

Phylogenomic Analyses Show Repeated Evolution of Hypertrophied Lips Among Lake Malawi Cichlid Fishes

inferred← citeshttps://doi.org/10.1093/gbe/evz185openalex-snapshot

The Genomic Substrate for Adaptive Radiation: Copy Number Variation across 12 Tribes of African Cichlid Species

inferred← citeshttps://doi.org/10.1093/iob/obz018openalex-snapshot

How to Investigate the Origins of Novelty: Insights Gained from Genetic, Behavioral, and Fitness Perspectives

inferred← citeshttps://doi.org/10.1093/molbev/msae217openalex-snapshot

Genetic and Developmental Divergence in the Neural Crest Program between Cichlid Fish Species

inferred← citeshttps://doi.org/10.1093/molbev/msz294openalex-snapshot

Ancestral Hybridization Facilitated Species Diversification in the Lake Malawi Cichlid Fish Adaptive Radiation

inferred← citeshttps://doi.org/10.1093/sysbio/syaa066openalex-snapshot

Disentangling Sources of Gene Tree Discordance in Phylogenomic Data Sets: Testing Ancient Hybridizations in Amaranthaceae s.l

inferred← citeshttps://doi.org/10.1093/sysbio/syaa076openalex-snapshot

Parallel ddRAD and Genome Skimming Analyses Reveal a Radiative and Reticulate Evolutionary History of the Temperate Bamboos

inferred← citeshttps://doi.org/10.1093/sysbio/syaa083openalex-snapshot

The Perfect Storm: Gene Tree Estimation Error, Incomplete Lineage Sorting, and Ancient Gene Flow Explain the Most Recalcitrant Ancient Angiosperm Clade, Malpighiales

inferred← citeshttps://doi.org/10.1093/sysbio/syaa102openalex-snapshot

A Comprehensive Approach to Detect Hybridization Sheds Light on the Evolution of Earth’s Largest Lizards

inferred← citeshttps://doi.org/10.1093/sysbio/syac034openalex-snapshot

Combining Species Delimitation, Species Trees, and Tests for Gene Flow Clarifies Complex Speciation in Scrub-Jays

inferred← citeshttps://doi.org/10.1093/sysbio/syac051openalex-snapshot

Exon-based Phylogenomics and the Relationships of African Cichlid Fishes: Tackling the Challenges of Reconstructing Phylogenies with Repeated Rapid Radiations

inferred← citeshttps://doi.org/10.1093/sysbio/syae018openalex-snapshot

Phylogenomic Discordance is Driven by Wide-Spread Introgression and Incomplete Lineage Sorting During Rapid Species Diversification Within Rattlesnakes (Viperidae: Crotalus and Sistrurus )

inferred← citeshttps://doi.org/10.1093/sysbio/syae028openalex-snapshot

Towards Reliable Detection of Introgression in the Presence of Among-Species Rate Variation

inferred← citeshttps://doi.org/10.1093/sysbio/syy004openalex-snapshot

Phenotypic and Genetic Structure Support Gene Flow Generating Gene Tree Discordances in an Amazonian Floodplain Endemic Species

inferred← citeshttps://doi.org/10.1093/sysbio/syy006openalex-snapshot

Bayesian Divergence-Time Estimation with Genome-Wide Single-Nucleotide Polymorphism Data of Sea Catfishes (Ariidae) Supports Miocene Closure of the Panamanian Isthmus

inferred← citeshttps://doi.org/10.1101/085431openalex-snapshot

Inferring the role of habitat dynamics in driving diversification: evidence for a species pump in Lake Tanganyika cichlids

inferred← citeshttps://doi.org/10.1101/2020.03.13.991182openalex-snapshot

Evolutionary divergence of novel open reading frames in cichlids speciation

inferred← citeshttps://doi.org/10.1101/2022.06.15.496264openalex-snapshot

A Novel Bacterial Speciation Process Observed in a Symbiotic Marine Population

inferred← citeshttps://doi.org/10.1101/2023.01.07.522986openalex-snapshot

Genomic evidence for rapid speciation and gene flow between sympatric carnivorous Nepenthes pitcher plants

inferred← citeshttps://doi.org/10.1101/2023.01.10.523206openalex-snapshot

Introgressive Descent and Hypersexuality Drive The Evolution Of Sexual Parasitism and Morphological Reduction In a Fungal Species Complex

inferred← citeshttps://doi.org/10.1101/2023.05.21.541635openalex-snapshot

Towards reliable detection of introgression in the presence of among-species rate variation

inferred← citeshttps://doi.org/10.1101/2023.09.12.557345openalex-snapshot

Rampant Reticulation in a Rapid Radiation of Tropical Trees - Insights from Inga (Fabaceae)

inferred← citeshttps://doi.org/10.1101/2024.08.01.605766openalex-snapshot

Target enrichment phylogenomics and biogeographic analyses unravel rapid radiation and reticulate evolution between Hainan-South China mainland -Vietnam in Section Nintooa ( Lonicera , Caprifoliaceae)

inferred← citeshttps://doi.org/10.1101/635631openalex-snapshot

Stable Species Boundaries Despite Ten Million Years of Hybridization in Tropical Eels

inferred← citeshttps://doi.org/10.1101/794370openalex-snapshot

Disentangling Sources of Gene Tree Discordance in Phylogenomic Datasets: Testing Ancient Hybridizations in Amaranthaceae s.l

inferred← citeshttps://doi.org/10.1101/cshperspect.a041452openalex-snapshot

Neotropics as a Cradle for Adaptive Radiations

inferred← citeshttps://doi.org/10.1111/cla.70012openalex-snapshot

Integrating morphological and phylogenomic data reveals the taxonomic puzzles, incongruence in phylogenies and cryptic species in Allium section Bromatorrhiza Ekberg

inferred← citeshttps://doi.org/10.1111/jbi.14352openalex-snapshot

Historical biogeography of a rapid and geographically wide diversification in Neotropical mammals

inferred← citeshttps://doi.org/10.1111/jbi.70074openalex-snapshot

Historical Drainage Evolution and Water Level Fluctuations in the African Great Lakes Shaped Phylogeny and Biogeography of Freshwater Gastropods

inferred← citeshttps://doi.org/10.1111/jeb.13196openalex-snapshot

Phylogenomics of pike cichlids (Cichlidae: Crenicichla ): the rapid ecological speciation of an incipient species flock

inferred← citeshttps://doi.org/10.1111/jzs.12409openalex-snapshot

A biogeographic–ecological approach to disentangle reticulate evolution in the Triatoma phyllosoma species group (Heteroptera: Triatominae), vectors of Chagas disease

inferred← citeshttps://doi.org/10.1111/mec.13767openalex-snapshot

Genomics of speciation and introgression in Princess cichlid fishes from Lake Tanganyika

inferred← citeshttps://doi.org/10.1111/mec.14564openalex-snapshot

Mitonuclear discordance in wolf spiders: Genomic evidence for species integrity and introgression

inferred← citeshttps://doi.org/10.1111/mec.14795openalex-snapshot

Detecting introgression despite phylogenetic uncertainty: The case of the South American siskins

inferred← citeshttps://doi.org/10.1111/mec.16184openalex-snapshot

Whole genome sequencing reveals a complex introgression history and the basis of adaptation to subarctic climate in wild sheep

inferred← citeshttps://doi.org/10.1111/mec.17764openalex-snapshot

Reconciling Gene Tree Discordance and Biogeography in European Crows

inferred← citeshttps://doi.org/10.1111/mec.17786openalex-snapshot

Genome Analyses Reveal Diverse Riverine Genetic Contributions to the Lake Malawi Cichlid Radiation

inferred← citeshttps://doi.org/10.1111/nph.15099openalex-snapshot

Phylogenomic analyses reveal a deep history of hybridization and polyploidy in the Neotropical genus Lachemilla (Rosaceae)

inferred← citeshttps://doi.org/10.1111/nph.15784openalex-snapshot

‘At the crossroads towards polyploidy’: genomic divergence and extent of homoploid hybridization are drivers for the formation of the ox‐eye daisy polyploid complex (Leucanthemum, Compositae‐Anthemideae)

inferred← citeshttps://doi.org/10.1111/nph.20187openalex-snapshot

Prezygotic barriers effectively limit hybridization in a rapid evolutionary radiation

inferred← citeshttps://doi.org/10.1111/syen.12668openalex-snapshot

Phylogenomics reveals the timescale of diversification in Amblycera

inferred← citeshttps://doi.org/10.1111/tpj.13657openalex-snapshot

Major structural genomic alterations can be associated with hybrid speciation inAegilops markgrafii(Triticeae)

inferred← citeshttps://doi.org/10.1111/zsc.12264openalex-snapshot

Mitonuclear discordance as a confounding factor in the DNA taxonomy of monogonont rotifers

inferred← citeshttps://doi.org/10.1146/annurev-ecolsys-110617-062443openalex-snapshot

The Paradox Behind the Pattern of Rapid Adaptive Radiation: How Can the Speciation Process Sustain Itself Through an Early Burst?

inferred← citeshttps://doi.org/10.1186/s12862-018-1248-4openalex-snapshot

Genome-wide markers reveal a complex evolutionary history involving divergence and introgression in the Abert’s squirrel (Sciurus aberti) species group

inferred← citeshttps://doi.org/10.1186/s12862-019-1417-0openalex-snapshot

East African cichlid lineages (Teleostei: Cichlidae) might be older than their ancient host lakes: new divergence estimates for the east African cichlid radiation

inferred← citeshttps://doi.org/10.1186/s12862-020-01602-xopenalex-snapshot

New haplochromine cichlid from the upper Miocene (9–10 MYA) of Central Kenya

inferred← citeshttps://doi.org/10.1186/s12862-022-02085-8openalex-snapshot

Complete mitochondrial genomes and updated divergence time of the two freshwater clupeids endemic to Lake Tanganyika (Africa) suggest intralacustrine speciation

inferred← citeshttps://doi.org/10.1186/s12862-024-02235-0openalex-snapshot

Mitogenomes do not substantially improve phylogenetic resolution in a young non-model adaptive radiation of freshwater gastropods

inferred← citeshttps://doi.org/10.1186/s12870-025-06982-0openalex-snapshot

Phylogenomics of East Asian lineage within subgenus Anguinum (Allium, Amaryllidaceae): insights into its taxonomic puzzles and phylogenetic conflicts

inferred← citeshttps://doi.org/10.1266/ggs.23-00024openalex-snapshot

Ancient standing genetic variation facilitated the adaptive radiation of Lake Victoria cichlids

inferred← citeshttps://doi.org/10.1371/journal.pcbi.1006650openalex-snapshot

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

inferred← citeshttps://doi.org/10.24072/pcjournal.359openalex-snapshot

An approximate likelihood method reveals ancient gene flow between human, chimpanzee and gorilla

inferred← citeshttps://doi.org/10.3389/fgene.2018.00359openalex-snapshot

Evidence for Introgression Among Three Species of the Anastrepha fraterculus Group, a Radiating Species Complex of Fruit Flies

inferred← citeshttps://doi.org/10.3389/fgene.2021.717200openalex-snapshot

Genome-Wide Evidence for Complex Hybridization and Demographic History in a Group of Cycas From China

inferred← citeshttps://doi.org/10.3389/fpls.2019.01814openalex-snapshot

Untangling the Evolution of American Wild Grapes: Admixed Species and How to Find Them

inferred← citeshttps://doi.org/10.3389/fpls.2020.584981openalex-snapshot

The Deep Evolutionary Relationships of the Morphologically Heterogeneous Nolinoideae (Asparagaceae) Revealed by Transcriptome Data

inferred← citeshttps://doi.org/10.3390/genes14081591openalex-snapshot

Mitogenomic Characterization of Cameroonian Endemic Coptodon camerunensis (Cichliformes: Cichlidae) and Matrilineal Phylogeny of Old-World Cichlids

inferred← citeshttps://doi.org/10.48130/tp-0026-0025openalex-snapshot

Phylogenomics and biogeography of Viburnum (Adoxaceae) based on plastid genomes reveal the roles of Qinghai-Xizang Plateau uplift and global cooling in its rapid radiation

inferred← citeshttps://doi.org/10.5598/imafungus.2018.09.01.10openalex-snapshot

Considerations and consequences of allowing DNA sequence data as types of fungal taxa

inferred← citeshttps://doi.org/10.64898/2026.05.11.723986openalex-snapshot

Substitution rate variation, not hidden paralogy, drives false hybridization signal in phylogenetic network inference

inferred← citeshttps://doi.org/10.7554/elife.82824openalex-snapshot

Polygenic adaptation from standing genetic variation allows rapid ecotype formation

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