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Bayesian Dating of Shallow Phylogenies with a Relaxed Clock

https://doi.org/10.1093/sysbio/syp082
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1006/mpev.1997.0478openalex-snapshot
Phylogenetic Relationships among Agamid Lizards of theLaudakia caucasiaSpecies Group: Testing Hypotheses of Biogeographic Fragmentation and an Area Cladogram for the Iranian Plateau
inferredcites →https://doi.org/10.1016/0377-0273(96)00021-2openalex-snapshot
K-Ar ages and magnetic stratigraphy of a hotspot-induced, fast grown oceanic island: El Hierro, Canary Islands
inferredcites →https://doi.org/10.1016/j.epsl.2005.09.029openalex-snapshot
A quantitative analysis of the desiccation and re-filling of the Mediterranean during the Messinian Salinity Crisis
inferredcites →https://doi.org/10.1016/j.ympev.2007.05.010openalex-snapshot
Molecular phylogeny and dating of an insular endemic moth radiation inferred from mitochondrial and nuclear genes: The genus Galagete (Lepidoptera: Autostichidae) of the Galapagos Islands
inferredcites →https://doi.org/10.1016/j.ympev.2007.11.018openalex-snapshot
Radiation, multiple dispersal and parallelism in the skinks, Chalcides and Sphenops (Squamata: Scincidae), with comments on Scincus and Scincopus and the age of the Sahara Desert
inferredcites →https://doi.org/10.1016/j.ympev.2008.04.013openalex-snapshot
Bayesian estimation of post-Messinian divergence times in Balearic Island lizards
inferredcites →https://doi.org/10.1016/j.ympev.2009.05.011openalex-snapshot
Historical biogeography, phylogenetic relationships and intraspecific diversity of agamid lizards in the Central Asian deserts of Kazakhstan and Uzbekistan
inferredcites →https://doi.org/10.1016/s1055-7903(03)00063-0openalex-snapshot
Molecular phylogeography reveals island colonization history and diversification of western Indian Ocean sunbirds (Nectarinia: Nectariniidae)
inferredcites →https://doi.org/10.1038/23231openalex-snapshot
Chronology, causes and progression of the Messinian salinity crisis
inferredcites →https://doi.org/10.1046/j.1365-294x.1998.00442.xopenalex-snapshot
Phylogeography of skinks (Chalcides) in the Canary Islands inferred from mitochondrial DNA sequences
inferredcites →https://doi.org/10.1080/10635150290102456openalex-snapshot
Divergence Time and Evolutionary Rate Estimation with Multilocus Data
inferredcites →https://doi.org/10.1080/10635150390235557openalex-snapshot
Comparison of Likelihood and Bayesian Methods for Estimating Divergence Times Using Multiple Gene Loci and Calibration Points, with Application to a Radiation of Cute-Looking Mouse Lemur Species
inferredcites →https://doi.org/10.1080/10635150701420643openalex-snapshot
Inferring Speciation Times under an Episodic Molecular Clock
inferredcites →https://doi.org/10.1093/acprof:oso/9780198567028.001.0001openalex-snapshot
Computational Molecular Evolution
inferredcites →https://doi.org/10.1093/genetics/143.1.537openalex-snapshot
Patterns of Nucleotide Substitution in Mitochondrial Protein Coding Genes of Vertebrates
inferredcites →https://doi.org/10.1093/molbev/msg226openalex-snapshot
Bayesian Models of Episodic Evolution Support a Late Precambrian Explosive Diversification of the Metazoa
inferredcites →https://doi.org/10.1093/molbev/msi125openalex-snapshot
Accuracy of Rate Estimation Using Relaxed-Clock Models with a Critical Focus on the Early Metazoan Radiation
inferredcites →https://doi.org/10.1093/molbev/msj024openalex-snapshot
Bayesian Estimation of Species Divergence Times Under a Molecular Clock Using Multiple Fossil Calibrations with Soft Bounds
inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot
PAML 4: Phylogenetic Analysis by Maximum Likelihood
inferredcites →https://doi.org/10.1093/molbev/msm193openalex-snapshot
A General Comparison of Relaxed Molecular Clock Models
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003811openalex-snapshot
Performance of a Divergence Time Estimation Method under a Probabilistic Model of Rate Evolution
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003974openalex-snapshot
Estimating Absolute Rates of Molecular Evolution and Divergence Times: A Penalized Likelihood Approach
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025811openalex-snapshot
Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo Method
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025892openalex-snapshot
Estimating the rate of evolution of the rate of molecular evolution
inferredcites →https://doi.org/10.1093/sysbio/syp078openalex-snapshot
The Impact of the Representation of Fossil Calibrations on Bayesian Estimation of Species Divergence Times
inferredcites →https://doi.org/10.1111/j.0014-3820.2005.tb01018.xopenalex-snapshot
DIVERSIFICATION OF THE FOREST BEETLE GENUS TARPHIUS ON THE CANARY ISLAND, AND THE EVOLUTIONARY ORIGINS OF ISLAND ENDEMICS
inferredcites →https://doi.org/10.1111/j.1365-294x.2005.02471.xopenalex-snapshot
Tracing an invasion: landbridges, refugia, and the phylogeography of the Neotropical rattlesnake (Serpentes: Viperidae: Crotalus durissus)
inferredcites →https://doi.org/10.1111/j.1365-294x.2006.03057.xopenalex-snapshot
Phylogeography of theBothrops jararacacomplex (Serpentes: Viperidae): past fragmentation and island colonization in the Brazilian Atlantic Forest
inferredcites →https://doi.org/10.1111/j.1558-5646.1989.tb04264.xopenalex-snapshot
CONFIDENCE LIMITS ON THE MAXIMUM-LIKELIHOOD ESTIMATE OF THE HOMINOID TREE FROM MITOCHONDRIAL-DNA SEQUENCES
inferredcites →https://doi.org/10.1186/1471-2148-5-70openalex-snapshot
Molecular dating of caprines using ancient DNA sequences of Myotragus balearicus, an extinct endemic Balearic mammal
inferredcites →https://doi.org/10.1186/1471-2148-7-214openalex-snapshot
BEAST: Bayesian evolutionary analysis by sampling trees
inferredcites →https://doi.org/10.1371/journal.pbio.0040088openalex-snapshot
Relaxed Phylogenetics and Dating with Confidence
inferredcites →https://doi.org/10.1554/04-342openalex-snapshot
DIVERSIFICATION OF THE FOREST BEETLE GENUS TARPHIUS ON THE CANARY ISLANDS, AND THE EVOLUTIONARY ORIGINS OF ISLAND ENDEMICS
inferredcites →https://doi.org/10.2307/j.ctv1nzfgj7openalex-snapshot
Phylogeography
inferredcites →https://doi.org/10.5860/choice.37-5647openalex-snapshot
Phylogeography: the history and formation of species

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1111/zsc.12690zenodo-depositor-declared
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inferred← citeshttps://doi.org/10.1002/9781118768853.refsopenalex-snapshot
References
inferred← citeshttps://doi.org/10.1002/ece3.326openalex-snapshot
Species delimitation and digit number in a N orth A frican skink
inferred← citeshttps://doi.org/10.1007/s10682-011-9488-4openalex-snapshot
The temporal dimension of marine speciation
inferred← citeshttps://doi.org/10.1007/s42991-022-00328-1openalex-snapshot
Mitochondrial DNA variation of the caracal (Caracal caracal) in Iran and range-wide phylogeographic comparisons
inferred← citeshttps://doi.org/10.1016/j.celrep.2022.111236openalex-snapshot
The sage genome provides insight into the evolutionary dynamics of diterpene biosynthesis gene cluster in plants
inferred← citeshttps://doi.org/10.1016/j.meegid.2016.05.036openalex-snapshot
Detailed phylogenetic analysis of primate T-lymphotropic virus type 1 (PTLV-1) sequences from orangutans ( Pongo pygmaeus ) reveals new insights into the evolutionary history of PTLV-1 in Asia
inferred← citeshttps://doi.org/10.1016/j.ympev.2010.03.020openalex-snapshot
Divergence times and colonization of the Canary Islands by Gallotia lizards
inferred← citeshttps://doi.org/10.1016/j.ympev.2011.04.001openalex-snapshot
Estimating the species tree for Hawaiian Schiedea (Caryophyllaceae) from multiple loci in the presence of reticulate evolution
inferred← citeshttps://doi.org/10.1016/j.ympev.2013.07.031openalex-snapshot
Multi-locus species tree for the Amazonian peacock basses (Cichlidae: Cichla): Emergent phylogenetic signal despite limited nuclear variation
inferred← citeshttps://doi.org/10.1016/j.ympev.2013.11.004openalex-snapshot
Intraspecific lineages of the lizard Phrynocephalus putjatia from the Qinghai-Tibetan Plateau: Impact of physical events on divergence and discordance between morphology and molecular markers
inferred← citeshttps://doi.org/10.1016/j.ympev.2014.05.032openalex-snapshot
The impact of calibration and clock-model choice on molecular estimates of divergence times
inferred← citeshttps://doi.org/10.1017/s1089332600002448openalex-snapshot
Molecules, Morphology, Fossils and the Origination and Extinction Dynamics of Scleractinian Corals
inferred← citeshttps://doi.org/10.1038/s41598-017-02674-4openalex-snapshot
The geography and timing of genetic divergence in the lizard Phrynocephalus theobaldi on the Qinghai-Tibetan plateau
inferred← citeshttps://doi.org/10.1071/is15035openalex-snapshot
Multilocus coalescent species delimitation reveals widespread cryptic differentiation among Drakensberg mountain-living freshwater crabs (Decapoda : Potamonautes)
inferred← citeshttps://doi.org/10.1080/17550874.2021.2012849openalex-snapshot
Plant speciation in the Quaternary
inferred← citeshttps://doi.org/10.1093/cz/zoad008openalex-snapshot
The Silk roads: phylogeography of Central Asian dice snakes (Serpentes: Natricidae) shaped by rivers in deserts and mountain valleys
inferred← citeshttps://doi.org/10.1093/jhered/esab013openalex-snapshot
Phylogeography of Cedros and Tiburón Island Mule Deer in North America’s Desert Southwest
inferred← citeshttps://doi.org/10.1093/molbev/msac161openalex-snapshot
Bayesian Phylogenetic Inference using Relaxed-clocks and the Multispecies Coalescent
inferred← citeshttps://doi.org/10.1093/molbev/msr072openalex-snapshot
Exploring Patterns and Extent of Bias in Estimating Divergence Time from Mitochondrial DNA Sequence Data in a Particular Lineage: A Case Study of Salamanders (Order Caudata)
inferred← citeshttps://doi.org/10.1093/molbev/msz255openalex-snapshot
Mitochondrial Metagenomics Reveals the Ancient Origin and Phylodiversity of Soil Mites and Provides a Phylogeny of the Acari
inferred← citeshttps://doi.org/10.1093/sysbio/syr130openalex-snapshot
Multiple Quaternary Refugia in the Eastern Guiana Shield Revealed by Comparative Phylogeography of 12 Frog Species
inferred← citeshttps://doi.org/10.1093/sysbio/syw095openalex-snapshot
The Impact of the Tree Prior on Molecular Dating of Data Sets Containing a Mixture of Inter- and Intraspecies Sampling
inferred← citeshttps://doi.org/10.1093/zoolinnean/zlad110openalex-snapshot
A phylogeny with divergence-time estimation of planthoppers (Hemiptera: Fulgoroidea) based on mitochondrial sequences
inferred← citeshttps://doi.org/10.1098/rstb.2011.0023openalex-snapshot
The historical biogeography of Mammalia
inferred← citeshttps://doi.org/10.1111/bij.12803openalex-snapshot
Evolutionary history ofTrachylepisskinks in the Seychelles islands: introgressive hybridization, morphological evolution and geographic structure
inferred← citeshttps://doi.org/10.1111/brv.12390openalex-snapshot
Bayesian molecular dating: opening up the black box
inferred← citeshttps://doi.org/10.1111/cla.12187openalex-snapshot
Dynamic diversification history with rate upshifts in Holarctic bell‐flowers (Campanula and allies)
inferred← citeshttps://doi.org/10.1111/cla.12223openalex-snapshot
Partition number, rate priors and unreliable divergence times in Bayesian phylogenetic dating
inferred← citeshttps://doi.org/10.1111/evo.12230openalex-snapshot
TESTING MITOCHONDRIAL CAPTURE AND DEEP COALESCENCE IN AMAZONIAN CICHLID FISHES (CICHLIDAE:CICHLA)
inferred← citeshttps://doi.org/10.1111/j.1096-3642.2011.00786.xopenalex-snapshot
Molecular dating and diversification of the South American lizard genus Liolaemus (subgenus Eulaemus) based on nuclear and mitochondrial DNA sequences
inferred← citeshttps://doi.org/10.1111/j.1365-294x.2010.04866.xopenalex-snapshot
A young clade repeating an old pattern: diversity inNothonotusdarters (Teleostei: Percidae) endemic to the Cumberland River
inferred← citeshttps://doi.org/10.1111/j.1365-294x.2012.05672.xopenalex-snapshot
Origin and in situ diversification in Hemidactylus geckos of the Socotra Archipelago
inferred← citeshttps://doi.org/10.1111/j.1439-0469.2012.00663.xopenalex-snapshot
Complex phylogeography in the Southern Smooth Snake (Coronella girondica) supported by mtDNA sequences
inferred← citeshttps://doi.org/10.1111/j.1463-6409.2011.00488.xopenalex-snapshot
Testing fossil calibrations for vertebrate molecular trees
inferred← citeshttps://doi.org/10.1111/j.1463-6409.2012.00540.xopenalex-snapshot
Forgotten in the ocean: systematics, biogeography and evolution of the Trachylepis skinks of the Socotra Archipelago
inferred← citeshttps://doi.org/10.1111/j.1466-8238.2011.00700.xopenalex-snapshot
The ecology of lizard reproductive output
inferred← citeshttps://doi.org/10.1111/j.1469-8137.2011.03861.xopenalex-snapshot
Phylogeographically concordant chloroplast DNA divergence in sympatric Nothofagus s.s. How deep can it be?
inferred← citeshttps://doi.org/10.1111/j.1759-6831.2012.00182.xopenalex-snapshot
Historical biogeography of the Angelica group (Apiaceae tribe Selineae) inferred from analyses of nrDNA and cpDNA sequences
inferred← citeshttps://doi.org/10.1111/jbi.12606openalex-snapshot
Evidence for multiple founding lineages and genetic admixture in the evolution of species within an oceanic island weevil (Coleoptera, Curculionidae) super‐radiation
inferred← citeshttps://doi.org/10.1111/jzs.12107openalex-snapshot
Taxonomy and biogeography ofBunopus spatalurus(Reptilia; Gekkonidae) from the Arabian Peninsula
inferred← citeshttps://doi.org/10.1111/mec.12443openalex-snapshot
Multilocus genetic diversity and historical biogeography of the endemic wall lizard from I biza and F ormentera, P odarcis pityusensis ( S quamata: L acertidae)
inferred← citeshttps://doi.org/10.1111/mec.12897openalex-snapshot
Ecological divergence combined with ancient allopatry in lizard populations from a small volcanic island
inferred← citeshttps://doi.org/10.1111/nph.13676openalex-snapshot
Puzzling rocks and complicated clocks: how to optimize molecular dating approaches in historical phytogeography
inferred← citeshttps://doi.org/10.1111/syen.70000openalex-snapshot
Systematic and taxonomic revision of emerald and tigertail dragonflies (Anisoptera: Synthemistidae and Corduliidae)
inferred← citeshttps://doi.org/10.1111/zoj.12103openalex-snapshot
Disentangling the divergence and cladogenesis in the freshwater crab species (Potamonautidae:Potamonautes perlatus sensu lato) in the Cape Fold Mountains, South Africa, with the description of two novel cryptic lineages
inferred← citeshttps://doi.org/10.1128/mbio.01425-16openalex-snapshot
Bats, Primates, and the Evolutionary Origins and Diversification of Mammalian Gammaherpesviruses
inferred← citeshttps://doi.org/10.1186/1471-2148-11-271openalex-snapshot
Rate variation and estimation of divergence times using strict and relaxed clocks
inferred← citeshttps://doi.org/10.1186/1471-2148-12-258openalex-snapshot
Conquering the Sahara and Arabian deserts: systematics and biogeography of Stenodactylus geckos (Reptilia: Gekkonidae)
inferred← citeshttps://doi.org/10.1186/s12862-016-0860-4openalex-snapshot
Evolutionary history of Podarcis tiliguerta on Corsica and Sardinia
inferred← citeshttps://doi.org/10.1371/journal.pone.0115078openalex-snapshot
Spiders on a Hot Volcanic Roof: Colonisation Pathways and Phylogeography of the Canary Islands Endemic Trap-Door Spider Titanidiops canariensis (Araneae, Idiopidae)
inferred← citeshttps://doi.org/10.2108/zs240006openalex-snapshot
Genetic Diversity and Population Structure of the Japanese Serow (Capricornis crispus) in Gunma Prefecture Based on Mitochondrial DNA Control Region Sequences
inferred← citeshttps://doi.org/10.3389/fgene.2015.00203openalex-snapshot
Potential for bias and low precision in molecular divergence time estimation of the Canopy of Life: an example from aquatic bird families
inferred← citeshttps://doi.org/10.7717/peerj.6334openalex-snapshot
The choice of tree prior and molecular clock does not substantially affect phylogenetic inferences of diversification rates
inferred← citeshttps://doi.org/10.7751/telopea20116014openalex-snapshot
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