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Computational Performance and Statistical Accuracy of *BEAST and Comparisons with Other Methods

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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From Gene to Organismal Phylogeny: Reconciled Trees and the Gene Tree/Species Tree Problem

inferredcites →https://doi.org/10.1007/978-3-642-13193-6_13openalex-snapshot

Fast FPT Algorithms for Computing Rooted Agreement Forests: Theory and Experiments

inferredcites →https://doi.org/10.1007/bf02101694openalex-snapshot

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

inferredcites →https://doi.org/10.1007/s00606-006-0510-1openalex-snapshot

Extensive length variation in the cpDNA trnT-trnF region of hemiparasitic Pedicularis and its phylogenetic implications

inferredcites →https://doi.org/10.1016/b978-1-4832-3211-9.50009-7openalex-snapshot

Evolution of Protein Molecules

inferredcites →https://doi.org/10.1016/j.aml.2010.06.021openalex-snapshot

The expected length of pendant and interior edges of a Yule tree

inferredcites →https://doi.org/10.1016/j.jtbi.2008.04.005openalex-snapshot

The conditioned reconstructed process

inferredcites →https://doi.org/10.1016/j.jtbi.2011.11.019openalex-snapshot

Distribution of branch lengths and phylogenetic diversity under homogeneous speciation models

inferredcites →https://doi.org/10.1016/j.tpb.2014.12.005openalex-snapshot

Likelihood-based tree reconstruction on a concatenation of aligned sequence data sets can be statistically inconsistent

inferredcites →https://doi.org/10.1016/j.ympev.2006.05.021openalex-snapshot

Primate molecular divergence dates

inferredcites →https://doi.org/10.1016/j.ympev.2011.12.007openalex-snapshot

Applications of next-generation sequencing to phylogeography and phylogenetics

inferredcites →https://doi.org/10.1016/j.ympev.2013.09.006openalex-snapshot

How low can you go? The effects of mutation rate on the accuracy of species-tree estimation

inferredcites →https://doi.org/10.1016/j.ympev.2014.08.013openalex-snapshot

Phylogenetic analysis at deep timescales: Unreliable gene trees, bypassed hidden support, and the coalescence/concatalescence conundrum

inferredcites →https://doi.org/10.1016/j.ympev.2014.09.001openalex-snapshot

A comprehensive multilocus phylogeny of the Neotropical cotingas (Cotingidae, Aves) with a comparative evolutionary analysis of breeding system and plumage dimorphism and a revised phylogenetic classification

inferredcites →https://doi.org/10.1016/j.ympev.2015.07.018openalex-snapshot

The gene tree delusion

inferredcites →https://doi.org/10.1038/416726aopenalex-snapshot

Using the fossil record to estimate the age of the last common ancestor of extant primates

inferredcites →https://doi.org/10.1038/nmeth.1419openalex-snapshot

Target-enrichment strategies for next-generation sequencing

inferredcites →https://doi.org/10.1038/nrg3012openalex-snapshot

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

inferredcites →https://doi.org/10.1073/pnas.0607004104openalex-snapshot

High-resolution species trees without concatenation

inferredcites →https://doi.org/10.1073/pnas.0805962105openalex-snapshot

Evolutionary history and the effect of biodiversity on plant productivity

inferredcites →https://doi.org/10.1073/pnas.1221121110openalex-snapshot

Concatenation versus coalescence versus “concatalescence”

inferredcites →https://doi.org/10.1080/10635150701607033openalex-snapshot

Estimating a Binary Character's Effect on Speciation and Extinction

inferredcites →https://doi.org/10.1080/106351599260030openalex-snapshot

How Should Species Phylogenies Be Inferred from Sequence Data?

inferredcites →https://doi.org/10.1086/600082openalex-snapshot

A Statistical Approach for Distinguishing Hybridization and Incomplete Lineage Sorting

inferredcites →https://doi.org/10.1093/bioinformatics/13.3.235openalex-snapshot

Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees

inferredcites →https://doi.org/10.1093/bioinformatics/btn484openalex-snapshot

BEST: Bayesian estimation of species trees under the coalescent model

inferredcites →https://doi.org/10.1093/bioinformatics/btp079openalex-snapshot

STEM: species tree estimation using maximum likelihood for gene trees under coalescence

inferredcites →https://doi.org/10.1093/bioinformatics/btq110openalex-snapshot

DensiTree: making sense of sets of phylogenetic trees

inferredcites →https://doi.org/10.1093/bioinformatics/btq228openalex-snapshot

DendroPy: a Python library for phylogenetic computing

inferredcites →https://doi.org/10.1093/bioinformatics/btq539openalex-snapshot

BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis

inferredcites →https://doi.org/10.1093/bioinformatics/btt394openalex-snapshot

Naive binning improves phylogenomic analyses

inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

inferredcites →https://doi.org/10.1093/bioinformatics/btu462openalex-snapshot

ASTRAL: genome-scale coalescent-based species tree estimation

inferredcites →https://doi.org/10.1093/bioinformatics/btu530openalex-snapshot

Quartet Inference from SNP Data Under the Coalescent Model

inferredcites →https://doi.org/10.1093/bioinformatics/btu770openalex-snapshot

DISSECT: an assignment-free Bayesian discovery method for species delimitation under the multispecies coalescent

inferredcites →https://doi.org/10.1093/bioinformatics/btv234openalex-snapshot

ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes

inferredcites →https://doi.org/10.1093/genetics/164.4.1645openalex-snapshot

Bayes Estimation of Species Divergence Times and Ancestral Population Sizes Using DNA Sequences From Multiple Loci

inferredcites →https://doi.org/10.1093/molbev/msp250openalex-snapshot

Fast and Consistent Estimation of Species Trees Using Supermatrix Rooted Triples

inferredcites →https://doi.org/10.1093/molbev/msp274openalex-snapshot

Bayesian Inference of Species Trees from Multilocus Data

inferredcites →https://doi.org/10.1093/molbev/mss086openalex-snapshot

Inferring Species Trees Directly from Biallelic Genetic Markers: Bypassing Gene Trees in a Full Coalescent Analysis

inferredcites →https://doi.org/10.1093/molbev/msv026openalex-snapshot

The Effects of Partitioning on Phylogenetic Inference

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025808openalex-snapshot

BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040112openalex-snapshot

Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation.

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040517openalex-snapshot

Relationships between gene trees and species trees.

inferredcites →https://doi.org/10.1093/sysbio/46.3.523openalex-snapshot

Gene Trees in Species Trees

inferredcites →https://doi.org/10.1093/sysbio/syp031openalex-snapshot

Estimating Species Phylogenies Using Coalescence Times among Sequences

inferredcites →https://doi.org/10.1093/sysbio/syp055openalex-snapshot

Identifying Hybridization Events in the Presence of Coalescence via Model Selection

inferredcites →https://doi.org/10.1093/sysbio/syq054openalex-snapshot

Dating Primate Divergences through an Integrated Analysis of Palaeontological and Molecular Data

inferredcites →https://doi.org/10.1093/sysbio/syq073openalex-snapshot

The Accuracy of Species Tree Estimation under Simulation: A Comparison of Methods

inferredcites →https://doi.org/10.1093/sysbio/syq084openalex-snapshot

Coalescent Histories on Phylogenetic Networks and Detection of Hybridization Despite Incomplete Lineage Sorting

inferredcites →https://doi.org/10.1093/sysbio/syr003openalex-snapshot

Comparing Two Bayesian Methods for Gene Tree/Species Tree Reconstruction: Simulations with Incomplete Lineage Sorting and Horizontal Gene Transfer

inferredcites →https://doi.org/10.1093/sysbio/syr025openalex-snapshot

Missing Data in Phylogenetic Analysis: Reconciling Results from Simulations and Empirical Data

inferredcites →https://doi.org/10.1093/sysbio/syr074openalex-snapshot

Guided Tree Topology Proposals for Bayesian Phylogenetic Inference

inferredcites →https://doi.org/10.1093/sysbio/syr105openalex-snapshot

Accuracy and Precision of Species Trees: Effects of Locus, Individual, and Base Pair Sampling on Inference of Species Trees in Lizards of the Liolaemus darwinii Group (Squamata, Liolaemidae)

inferredcites →https://doi.org/10.1093/sysbio/sys004openalex-snapshot

Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales

inferredcites →https://doi.org/10.1093/sysbio/sys049openalex-snapshot

Anchored Hybrid Enrichment for Massively High-Throughput Phylogenomics

inferredcites →https://doi.org/10.1093/sysbio/syt032openalex-snapshot

Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)

inferredcites →https://doi.org/10.1093/sysbio/syt049openalex-snapshot

The Influence of Gene Flow on Species Tree Estimation: A Simulation Study

inferredcites →https://doi.org/10.1093/sysbio/syu063openalex-snapshot

Evaluating Summary Methods for Multilocus Species Tree Estimation in the Presence of Incomplete Lineage Sorting

inferredcites →https://doi.org/10.1098/rstb.1925.0002openalex-snapshot

II.—A mathematical theory of evolution, based on the conclusions of Dr. J. C. Willis, F. R. S

inferredcites →https://doi.org/10.1098/rstb.1994.0054openalex-snapshot

Extinction rates can be estimated from molecular phylogenies

inferredcites →https://doi.org/10.1101/gr.130468.111openalex-snapshot

Comparative RNA sequencing reveals substantial genetic variation in endangered primates

inferredcites →https://doi.org/10.1111/j.1558-5646.1993.tb02144.xopenalex-snapshot

SEARCHING FOR EVOLUTIONARY PATTERNS IN THE SHAPE OF A PHYLOGENETIC TREE

inferredcites →https://doi.org/10.1111/j.1558-5646.2008.00414.xopenalex-snapshot

ESTIMATING SPECIES TREES USING MULTIPLE-ALLELE DNA SEQUENCE DATA

inferredcites →https://doi.org/10.1111/j.2517-6161.1995.tb02031.xopenalex-snapshot

Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing

inferredcites →https://doi.org/10.1186/1471-2148-10-302openalex-snapshot

A maximum pseudo-likelihood approach for estimating species trees under the coalescent model

inferredcites →https://doi.org/10.1186/1471-2148-13-221openalex-snapshot

Looking for trees in the forest: summary tree from posterior samples

inferredcites →https://doi.org/10.1186/1471-2148-13-44openalex-snapshot

Simulating gene trees under the multispecies coalescent and time-dependent migration

inferredcites →https://doi.org/10.1186/1471-2164-13-403openalex-snapshot

Transcriptome-based exon capture enables highly cost-effective comparative genomic data collection at moderate evolutionary scales

inferredcites →https://doi.org/10.1214/aoms/1177730285openalex-snapshot

On the Generalized "Birth-and-Death" Process

inferredcites →https://doi.org/10.1371/journal.pcbi.1003537openalex-snapshot

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

inferredcites →https://doi.org/10.1371/journal.pgen.0020068openalex-snapshot

Discordance of Species Trees with Their Most Likely Gene Trees

inferredcites →https://doi.org/10.1371/journal.pone.0003376openalex-snapshot

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

inferredcites →https://doi.org/10.2307/2409983openalex-snapshot

Searching for Evolutionary Patterns in the Shape of a Phylogenetic Tree

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Coalescent-delimitation framework disentangles species boundaries within the Neotropical mouse-opossums subgenus Marmosops

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Practical considerations for plant phylogenomics

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Advances in Computational Methods for Phylogenetic Networks in the Presence of Hybridization

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Theoretical and Empirical Performance of Pseudo-likelihood-Based Bayesian Inference of Species Trees Under the Multispecies Coalescent

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Intertidal or subtidal/circalittoral species: which appeared first? A phylogenetic approach to the evolution of non-planktotrophic species in Atlantic Archipelagos

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Phylogenetic relationships and divergence time of Hydrangea sect. Macrophyllae (Hydrangeaceae) revealed by genome-wide SNPs

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Microbial Sequence Typing Strategies for Genetic and Genomic Data

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The challenge of species delimitation in Brumptomyia sand flies (Diptera: Psychodidae) from Brazil

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Phylogeography, hotspots and conservation priorities: an example from the Top End of Australia

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Advances using molecular data in insect systematics

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First insight into cryptic diversity of a Caucasian subterranean amphipod of the genus Niphargus (Crustacea: Amphipoda: Niphargidae)

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Microbial sequence typing in the genomic era

inferred← citeshttps://doi.org/10.1016/j.meegid.2020.104208openalex-snapshot

High-throughput sequencing (HTS) for the analysis of viral populations

inferred← citeshttps://doi.org/10.1016/j.ygeno.2021.04.021openalex-snapshot

Yersinia pestis strains isolated in natural plague foci of Caucasus and Transcaucasia in the context of the global evolution of species

inferred← citeshttps://doi.org/10.1016/j.ympev.2017.04.027openalex-snapshot

Epigean gammarids survived millions of years of severe climatic fluctuations in high latitude refugia throughout the Western Carpathians

inferred← citeshttps://doi.org/10.1016/j.ympev.2018.05.008openalex-snapshot

Rapid diversification and hybridization have shaped the dynamic history of the genus Elaenia

inferred← citeshttps://doi.org/10.1016/j.ympev.2018.06.008openalex-snapshot

Worldwide phylogeny of three-spined sticklebacks

inferred← citeshttps://doi.org/10.1016/j.ympev.2018.10.033openalex-snapshot

Multi-allele species reconstruction using ASTRAL

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Fish diversification at the pace of geomorphological changes: evolutionary history of western Iberian Leuciscinae (Teleostei: Leuciscidae) inferred from multilocus sequence data

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Molecular phylogeny of Oreochromis (Cichlidae: Oreochromini) reveals mito-nuclear discordance and multiple colonisation of adverse aquatic environments

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Ups and downs: Genetic differentiation among populations of the Podocarpus (Podocarpaceae) species in Mesoamerica

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An alpine grasshopper radiation older than the mountains, on Kā Tiritiri o te Moana (Southern Alps) of Aotearoa (New Zealand)

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Larger, unfiltered datasets are more effective at resolving phylogenetic conflict: Introns, exons, and UCEs resolve ambiguities in Golden-backed frogs (Anura: Ranidae; genus Hylarana)

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Phylogenomic test of mitochondrial clues to archaic ancestors in a group of hybridizing swallowtail butterflies

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Gauging ages of tiger swallowtail butterflies using alternate SNP analyses

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A simple dynamic model explains the diversity of island birds worldwide

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Linking morphological and molecular sources to disentangle the case of Xylodon australis

inferred← citeshttps://doi.org/10.1038/s42003-022-03723-zopenalex-snapshot

Quantitatively defining species boundaries with more efficiency and more biological realism

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Evolution of South Asian mountain biota: dispersal, fine-scale biogeography, phylogenetics and systematics of Nannenini jumping spiders

inferred← citeshttps://doi.org/10.1080/00275514.2018.1512304openalex-snapshot

The use of microsatellite markers for species delimitation in Antarctic Usnea subgenus Neuropogon

inferred← citeshttps://doi.org/10.1093/bioinformatics/btaa679openalex-snapshot

UglyTrees: a browser-based multispecies coalescent tree visualizer

inferred← citeshttps://doi.org/10.1093/bioinformatics/btac265openalex-snapshot

QuCo: quartet-based co-estimation of species trees and gene trees

inferred← citeshttps://doi.org/10.1093/gbe/evad094openalex-snapshot

“Correcting” Gene Trees to be More Like Species Trees Frequently Increases Topological Error

inferred← citeshttps://doi.org/10.1093/molbev/msaa045openalex-snapshot

Practical Speedup of Bayesian Inference of Species Phylogenies by Restricting the Space of Gene Trees

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A Simulation Study to Examine the Information Content in Phylogenomic Data Sets under the Multispecies Coalescent Model

inferred← citeshttps://doi.org/10.1093/molbev/msac034openalex-snapshot

The Carbon Footprint of Bioinformatics

inferred← citeshttps://doi.org/10.1093/molbev/msac161openalex-snapshot

Bayesian Phylogenetic Inference using Relaxed-clocks and the Multispecies Coalescent

inferred← citeshttps://doi.org/10.1093/molbev/msx126openalex-snapshot

StarBEAST2 Brings Faster Species Tree Inference and Accurate Estimates of Substitution Rates

inferred← citeshttps://doi.org/10.1093/molbev/msy147openalex-snapshot

Species Tree Inference with BPP Using Genomic Sequences and the Multispecies Coalescent

inferred← citeshttps://doi.org/10.1093/molbev/msz263openalex-snapshot

Optimizing Phylogenomics with Rapidly Evolving Long Exons: Comparison with Anchored Hybrid Enrichment and Ultraconserved Elements

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A new phylogenetic protocol: dealing with model misspecification and confirmation bias in molecular phylogenetics

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Phylogenomics, Biogeography, and Morphometrics Reveal Rapid Phenotypic Evolution in Pythons After Crossing Wallace’s Line

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Phylogenomics of Monitor Lizards and the Role of Competition in Dictating Body Size Disparity

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An Evolving View of Phylogenetic Support

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Introgression and Species Delimitation in the Longear Sunfish Lepomis megalotis (Teleostei: Percomorpha: Centrarchidae)

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Novel Integrative Modeling of Molecules and Morphology across Evolutionary Timescales

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Deep Ancestral Introgression Shapes Evolutionary History of Dragonflies and Damselflies

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StarBeast3: Adaptive Parallelized Bayesian Inference under the Multispecies Coalescent

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Does Gene Tree Discordance Explain the Mismatch between Macroevolutionary Models and Empirical Patterns of Tree Shape and Branching Times?

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Phylogenomics for Systematic Biology

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Disentangling Incomplete Lineage Sorting and Introgression to Refine Species-Tree Estimates for Lake Tanganyika Cichlid Fishes

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Accounting for Uncertainty in Gene Tree Estimation: Summary-Coalescent Species Tree Inference in a Challenging Radiation of Australian Lizards

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The Impact of the Tree Prior on Molecular Dating of Data Sets Containing a Mixture of Inter- and Intraspecies Sampling

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Efficient Bayesian Species Tree Inference under the Multispecies Coalescent

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Resolving Rapid Radiations within Angiosperm Families Using Anchored Phylogenomics

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An In Silico Comparison of Protocols for Dated Phylogenomics

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Bayesian Divergence-Time Estimation with Genome-Wide Single-Nucleotide Polymorphism Data of Sea Catfishes (Ariidae) Supports Miocene Closure of the Panamanian Isthmus

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Identifying SARS-CoV-2 regional introductions and transmission clusters in real time

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Fossil-calibrated phylogenies of Southern cave wētā show dispersal and extinction confound biogeographic signal

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Habitat preference modulates trans-oceanic dispersal in a terrestrial vertebrate

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An in silico comparison of reduced-representation and sequence-capture protocols for phylogenomics

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Resolving Rapid Radiations Within Angiosperm Families Using Anchored Phylogenomics

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Minimal clustering and species delimitation based on multi-locus alignments vs SNPs: the case of the Seriphium plumosum L. complex (Gnaphalieae: Asteraceae)

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StarBeast3: Adaptive Parallelised Bayesian Inference of the Multispecies Coalescent

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“Correcting” gene trees to be more like species trees increases topological error when incomplete lineage sorting is high

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Phylogeny Inference Under Time-Decaying Migration and Varying Information Content

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Novel Integrative Modeling of Molecules and Morphology across Evolutionary Timescales

inferred← citeshttps://doi.org/10.1101/536656openalex-snapshot

Molecular dating for phylogenies containing a mix of populations and species

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Practical Aspects of Phylogenetic Network Analysis Using PhyloNet

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Exons, Introns, and UCEs Reveal Conflicting Phylogenomic Signals in a Rapid Radiation of Frogs (Ranidae: Hylarana )

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Species delimitation in the grey zone: introgression obfuscates phylogenetic inference and species boundaries in a cryptic frog complex (Ranidae: Pulchrana picturata )

inferred← citeshttps://doi.org/10.1111/1755-0998.12557openalex-snapshot

Algorithmic single‐locus species delimitation: effects of sampling effort, variation and nonmonophyly in four methods and 1870 species of beetles

inferred← citeshttps://doi.org/10.1111/1755-0998.12633openalex-snapshot

Resources for phylogenomic analyses of Australian terrestrial vertebrates

inferred← citeshttps://doi.org/10.1111/1755-0998.13249openalex-snapshot

Molecular dating for phylogenies containing a mix of populations and species by using Bayesian and RelTime approaches

inferred← citeshttps://doi.org/10.1111/2041-210x.13980openalex-snapshot

Polymorphism‐aware estimation of species trees and evolutionary forces from genomic sequences with RevBayes

inferred← citeshttps://doi.org/10.1111/evo.13380openalex-snapshot

Cryptic lineage diversity, body size divergence, and sympatry in a species complex of Australian lizards (Gehyra)

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Diversification across biomes in a continental lizard radiation

inferred← citeshttps://doi.org/10.1111/evo.14462openalex-snapshot

Parthenogenesis in Darevskia lizards: A rare outcome of common hybridization, not a common outcome of rare hybridization

inferred← citeshttps://doi.org/10.1111/jav.01580openalex-snapshot

Cophylogenetic assessment of New World warblers (Parulidae) and their symbiotic feather mites (Proctophyllodidae)

inferred← citeshttps://doi.org/10.1111/jbi.12989openalex-snapshot

A phylogenomic perspective on the biogeography of skinks in the Plestiodon brevirostris group inferred from target enrichment of ultraconserved elements

inferred← citeshttps://doi.org/10.1111/jzs.12412openalex-snapshot

Resolving species boundaries in the critically imperiled freshwater mussel species,Fusconaia mitchelli(Bivalvia: Unionidae)

inferred← citeshttps://doi.org/10.1111/mec.15603openalex-snapshot

Gene flow creates a mirage of cryptic species in a Southeast Asian spotted stream frog complex

inferred← citeshttps://doi.org/10.1111/zsc.12590openalex-snapshot

Discordant phylogenies in the Sorex araneus group (Soricidae, Mammalia): Footprints of past reticulations?

inferred← citeshttps://doi.org/10.1111/zsc.12646openalex-snapshot

Morphological and genetic diversity in a South American forest‐dependent bat

inferred← citeshttps://doi.org/10.1134/s2079086422050024openalex-snapshot

The Concept of the Modern Molecular Clock and Experience in Estimating Divergence Times of Eulipotyphla and Rodentia

inferred← citeshttps://doi.org/10.1186/s12862-016-0628-xopenalex-snapshot

Phylogenomics of a rapid radiation: is chromosomal evolution linked to increased diversification in north american spiny lizards (Genus Sceloporus)?

inferred← citeshttps://doi.org/10.1186/s12862-017-0890-6openalex-snapshot

bModelTest: Bayesian phylogenetic site model averaging and model comparison

inferred← citeshttps://doi.org/10.1186/s12862-018-1130-4openalex-snapshot

Phylogenomics of a rapid radiation: the Australian rainbow skinks

inferred← citeshttps://doi.org/10.1186/s12862-019-1408-1openalex-snapshot

On and off the rocks: persistence and ecological diversification in a tropical Australian lizard radiation

inferred← citeshttps://doi.org/10.1186/s13015-021-00189-2openalex-snapshot

Using Robinson-Foulds supertrees in divide-and-conquer phylogeny estimation

inferred← citeshttps://doi.org/10.12705/673.15openalex-snapshot

Disentangling the infrageneric classification of megadiverse taxa from Mata Atlantica: Phylogeny of Miconia section Chaenanthera (Melastomataceae: Miconieae)

inferred← citeshttps://doi.org/10.1371/journal.pcbi.1006650openalex-snapshot

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

inferred← citeshttps://doi.org/10.1534/genetics.116.190173openalex-snapshot

Challenges in Species Tree Estimation Under the Multispecies Coalescent Model

inferred← citeshttps://doi.org/10.1590/0074-02760170297openalex-snapshot

Trypanosoma janseni n. sp. (Trypanosomatida: Trypanosomatidae) isolated from Didelphis aurita (Mammalia: Didelphidae) in the Atlantic Rainforest of Rio de Janeiro, Brazil: integrative taxonomy and phylogeography within the Trypanosoma cruzi clade

inferred← citeshttps://doi.org/10.1643/ch-16-552openalex-snapshot

Coalescent Species Tree Inference ofColuberandMasticophis

inferred← citeshttps://doi.org/10.22541/au.160253833.37656353/v1openalex-snapshot

Paleoceanographic changes in the late Pliocene promoted rapid diversification in pelagic seabirds

inferred← citeshttps://doi.org/10.32942/x2j043openalex-snapshot

Unrecognized lineages transform our understanding of diversification in a clade of lizards

inferred← citeshttps://doi.org/10.3389/fevo.2018.00165openalex-snapshot

Genetic Diversity and Conservation Units: Dealing With the Species-Population Continuum in the Age of Genomics

inferred← citeshttps://doi.org/10.3390/d12070281openalex-snapshot

A Comparative Phylogeographic Approach to Facilitate Recovery of an Imperiled Freshwater Mussel (Bivalvia: Unionida: Potamilus inflatus)

inferred← citeshttps://doi.org/10.3390/d15111114openalex-snapshot

A Molecular Phylogeny of Stylodipus (Dipodidae, Mammalia): A Small Genus with a Complex History

inferred← citeshttps://doi.org/10.3390/s23156843openalex-snapshot

Optimizing Machine Learning Algorithms for Landslide Susceptibility Mapping along the Karakoram Highway, Gilgit Baltistan, Pakistan: A Comparative Study of Baseline, Bayesian, and Metaheuristic Hyperparameter Optimization Techniques

inferred← citeshttps://doi.org/10.3767/persoonia.2020.44.07openalex-snapshot

Phylogeny and character evolution in the Dacrymycetes , and systematics of Unilacrymaceae and Dacryonaemataceae fam. nov.

inferred← citeshttps://doi.org/10.48550/arxiv.1904.03826openalex-snapshot

Species Tree Estimation Using ASTRAL: Practical Considerations

inferred← citeshttps://doi.org/10.64898/2025.12.21.695861openalex-snapshot

Reconstructing substitution histories on phylogenies, with accuracy, precision, and coverage

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