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An examination of phylogenetic models of substitution rate variation among lineages
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Continuous and tractable models for the variation of evolutionary rates
inferredcites →https://doi.org/10.1016/s0025-5564(97)00081-3openalex-snapshot
Modeling the covarion hypothesis of nucleotide substitution
inferredcites →https://doi.org/10.1038/nrg2158openalex-snapshot
Mutation rate variation in multicellular eukaryotes: causes and consequences
inferredcites →https://doi.org/10.1073/pnas.0407735101openalex-snapshot
The rate of DNA evolution: Effects of body size and temperature on the molecular clock
inferredcites →https://doi.org/10.1073/pnas.0510251103openalex-snapshot
There is no universal molecular clock for invertebrates, but rate variation does not scale with body size
inferredcites →https://doi.org/10.1073/pnas.0703359104openalex-snapshot
Metabolic rate does not calibrate the molecular clock
inferredcites →https://doi.org/10.1073/pnas.0705658104openalex-snapshot
Life-history traits drive the evolutionary rates of mammalian coding and noncoding genomic elements
inferredcites →https://doi.org/10.1080/10635150290102375openalex-snapshot
Effects of Models of Rate Evolution on Estimation of Divergence Dates with Special Reference to the Metazoan 18S Ribosomal RNA Phylogeny
inferredcites →https://doi.org/10.1080/10635150701420643openalex-snapshot
Inferring Speciation Times under an Episodic Molecular Clock
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Correlates of Diversification in the Plant Clade Dipsacales: Geographic Movement and Evolutionary Innovations
inferredcites →https://doi.org/10.1093/genetics/154.4.1879openalex-snapshot
A Compound Poisson Process for Relaxing the Molecular Clock
inferredcites →https://doi.org/10.1093/molbev/msh088openalex-snapshot
Estimating Absolute Rates of Synonymous and Nonsynonymous Nucleotide Substitution in Order to Characterize Natural Selection and Date Species Divergences
inferredcites →https://doi.org/10.1093/molbev/msi125openalex-snapshot
Accuracy of Rate Estimation Using Relaxed-Clock Models with a Critical Focus on the Early Metazoan Radiation
inferredcites →https://doi.org/10.1093/molbev/msm193openalex-snapshot
A General Comparison of Relaxed Molecular Clock Models
inferredcites →https://doi.org/10.1093/molbev/msm248openalex-snapshot
Strong Variations of Mitochondrial Mutation Rate across Mammals--the Longevity Hypothesis
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003811openalex-snapshot
Performance of a Divergence Time Estimation Method under a Probabilistic Model of Rate Evolution
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003974openalex-snapshot
Estimating Absolute Rates of Molecular Evolution and Divergence Times: A Penalized Likelihood Approach
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025731openalex-snapshot
A Nonparametric Approach to Estimating Divergence Times in the Absence of Rate Constancy
inferredcites →https://doi.org/10.1098/rspb.2004.2849openalex-snapshot
Environmental energy and evolutionary rates in flowering plants
inferredcites →https://doi.org/10.1111/j.1366-9516.2006.00210.xopenalex-snapshot
Molecular dating of phylogenetic trees: A brief review of current methods that estimate divergence times
inferredcites →https://doi.org/10.1126/science.1122033openalex-snapshot
Population Size Does Not Influence Mitochondrial Genetic Diversity in Animals
inferredcites →https://doi.org/10.1126/science.1163197openalex-snapshot
Rates of Molecular Evolution Are Linked to Life History in Flowering Plants
inferredcites →https://doi.org/10.1186/1471-2148-8-53openalex-snapshot
Correlates of substitution rate variation in mammalian protein-coding sequences
inferredcites →https://doi.org/10.1186/1741-7007-6-6openalex-snapshot
Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages
inferredcites →https://doi.org/10.1371/journal.pbio.0040088openalex-snapshot
Relaxed Phylogenetics and Dating with Confidence
inferredcites →https://doi.org/10.1371/journal.pcbi.0030029openalex-snapshot
Synonymous Substitution Rates Predict HIV Disease Progression as a Result of Underlying Replication Dynamics
inferredcites →https://doi.org/10.1554/0014-3820(2001)055[0677:erasdi]2.0.co;2openalex-snapshot
EVOLUTIONARY RATES AND SPECIES DIVERSITY IN FLOWERING PLANTS
inferredcites →https://doi.org/10.2307/2992183openalex-snapshot
Adaptation: Statistics and a Null Model for Estimating Phylogenetic Effects
inferredcites →https://doi.org/10.5860/choice.30-2064openalex-snapshot
The causes of molecular evolution
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Are pollen fossils useful for calibrating relaxed molecular clock dating of phylogenies? A comparative study using Myrtaceae
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Lifestyle Transitions in Fusarioid Fungi are Frequent and Lack Clear Genomic Signatures
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Performance of Relaxed-Clock Methods in Estimating Evolutionary Divergence Times and Their Credibility Intervals
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A Likelihood Method for Detecting Trait-Dependent Shifts in the Rate of Molecular Evolution
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Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous–Paleogene boundary
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Systematic inference of mutation rates and spectra across the tree of life via a scalable read-based framework
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