On the public citation graph

A dynamic history of gene duplications and losses characterizes the evolution of the SPARC family in eumetazoans

https://doi.org/10.1098/rspb.2012.2963

0 signed · 89 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.

Claim with ORCID

Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.

See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/dvdy.21779openalex-snapshot

Essential role for the alpha 1 chain of type VIII collagen in Zebrafish notochord formation

inferredcites →https://doi.org/10.1002/dvdy.21838openalex-snapshot

Tracking gene expression during zebrafish osteoblast differentiation

inferredcites →https://doi.org/10.1002/jez.b.20025openalex-snapshot

Preliminary observations on the spawning conditions of the European amphioxus (Branchiostoma lanceolatum) in captivity

inferredcites →https://doi.org/10.1002/jez.b.21088openalex-snapshot

Evolutionary genetics of vertebrate tissue mineralization: the origin and evolution of the secretory calcium‐binding phosphoprotein family

inferredcites →https://doi.org/10.1002/jez.b.21157openalex-snapshot

Development and evolution of chordate cartilage

inferredcites →https://doi.org/10.1002/jez.b.21179openalex-snapshot

Insights into spawning behavior and development of the european amphioxus (Branchiostoma lanceolatum)

inferredcites →https://doi.org/10.1007/978-1-59745-251-9_6openalex-snapshot

Estimating Maximum Likelihood Phylogenies with PhyML

inferredcites →https://doi.org/10.1007/s00281-010-0230-zopenalex-snapshot

Biomineralization and matrix vesicles in biology and pathology

inferredcites →https://doi.org/10.1007/s00427-002-0220-9openalex-snapshot

Evolutionary conservation and association of SPARC with the basal lamina in Drosophila

inferredcites →https://doi.org/10.1007/s00427-008-0256-6openalex-snapshot

Evidence for stasis and not genetic piracy in developmental expression patterns of Branchiostoma lanceolatum and Branchiostoma floridae, two amphioxus species that have evolved independently over the course of 200 Myr

inferredcites →https://doi.org/10.1007/s00427-009-0276-xopenalex-snapshot

The SCPP gene repertoire in bony vertebrates and graded differences in mineralized tissues

inferredcites →https://doi.org/10.1007/s00427-009-0313-9openalex-snapshot

Molecular evolution of SPARC: absence of the acidic module and expression in the endoderm of the starlet sea anemone, Nematostella vectensis

inferredcites →https://doi.org/10.1016/0092-8674(81)90037-4openalex-snapshot

Osteonectin, a bone-specific protein linking mineral to collagen

inferredcites →https://doi.org/10.1016/0925-4773(95)00359-9openalex-snapshot

Spatially and temporally regulated expression of the LIM class homeobox gene Hrlim suggests multiple distinct functions in development of the ascidian, Halocynthia roretzi

inferredcites →https://doi.org/10.1016/j.bone.2007.04.191openalex-snapshot

Bone sialoprotein expression enhances osteoblast differentiation and matrix mineralization in vitro

inferredcites →https://doi.org/10.1016/j.bone.2008.05.009openalex-snapshot

Differences in matrix composition between calvaria and long bone in mice suggest differences in biomechanical properties and resorption

inferredcites →https://doi.org/10.1016/j.bone.2009.09.007openalex-snapshot

Bone sialoprotein, but not osteopontin, deficiency impairs the mineralization of regenerating bone during cortical defect healing

inferredcites →https://doi.org/10.1016/j.bone.2012.05.009openalex-snapshot

Structural disorder in proteins brings order to crystal growth in biomineralization

inferredcites →https://doi.org/10.1016/j.devcel.2010.09.004openalex-snapshot

Drosophila SPARC Is a Self-Protective Signal Expressed by Loser Cells during Cell Competition

inferredcites →https://doi.org/10.1016/j.gene.2006.01.011openalex-snapshot

Dynamic expression of sparc precedes formation of skeletal elements in the Medaka (Oryzias latipes)

inferredcites →https://doi.org/10.1016/j.gep.2011.06.001openalex-snapshot

Cloning and spatiotemporal expression of RIC-8 in Xenopus embryogenesis

inferredcites →https://doi.org/10.1016/j.matbio.2008.03.001openalex-snapshot

Sparc (Osteonectin) functions in morphogenesis of the pharyngeal skeleton and inner ear

inferredcites →https://doi.org/10.1016/j.ydbio.2005.01.019openalex-snapshot

Developmental biology meets materials science: Morphogenesis of biomineralized structures

inferredcites →https://doi.org/10.1016/j.ydbio.2006.07.047openalex-snapshot

A genome-wide analysis of biomineralization-related proteins in the sea urchin Strongylocentrotus purpuratus

inferredcites →https://doi.org/10.1016/s0091-679x(08)60307-6openalex-snapshot

Appendix G: In Situ Hybridization: An Improved Whole-Mount Method for Xenopus Embryos

inferredcites →https://doi.org/10.1016/s0305-1978(97)84856-9openalex-snapshot

Molecular zoology: Advances, strategies, and protocols

inferredcites →https://doi.org/10.1038/msb.2011.75openalex-snapshot

Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega

inferredcites →https://doi.org/10.1038/nature03025openalex-snapshot

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

inferredcites →https://doi.org/10.1038/ng1905openalex-snapshot

Loss of DMP1 causes rickets and osteomalacia and identifies a role for osteocytes in mineral metabolism

inferredcites →https://doi.org/10.1038/ng884openalex-snapshot

Extensive genomic duplication during early chordate evolution

inferredcites →https://doi.org/10.1038/nprot.2007.514openalex-snapshot

High-resolution in situ hybridization to whole-mount zebrafish embryos

inferredcites →https://doi.org/10.1073/pnas.0404279101openalex-snapshot

Genetic basis for the evolution of vertebrate mineralized tissue

inferredcites →https://doi.org/10.1073/pnas.0605630103openalex-snapshot

Hagfish and lancelet fibrillar collagens reveal that type II collagen-based cartilage evolved in stem vertebrates

inferredcites →https://doi.org/10.1073/pnas.0808452105openalex-snapshot

Structural basis of sequence-specific collagen recognition by SPARC

inferredcites →https://doi.org/10.1073/pnas.0914218107openalex-snapshot

Mapping amorphous calcium phosphate transformation into crystalline mineral from the cell to the bone in zebrafish fin rays

inferredcites →https://doi.org/10.1073/pnas.43.10.860openalex-snapshot

MACROMOLECULAR AGGREGATION STATES IN RELATION TO MINERALIZATION: THE COLLAGEN-HYDROXYAPATITE SYSTEM AS STUDIED IN VITRO

inferredcites →https://doi.org/10.1073/pnas.87.17.6669openalex-snapshot

Characterization of a fibrillar collagen gene in sponges reveals the early evolutionary appearance of two collagen gene families.

inferredcites →https://doi.org/10.1073/pnas.90.18.8562openalex-snapshot

Nucleation of hydroxyapatite by bone sialoprotein.

inferredcites →https://doi.org/10.1074/jbc.m710565200openalex-snapshot

Enamel Defects and Ameloblast-specific Expression in Enam Knock-out/lacZ Knock-in Mice

inferredcites →https://doi.org/10.1080/03008200390152061openalex-snapshot

Six Genes Expressed in Bones and Teeth Encode the Current Members of the SIBLING Family of Proteins

inferredcites →https://doi.org/10.1083/jcb.105.1.473openalex-snapshot

In vivo expression of mRNA for the Ca++-binding protein SPARC (osteonectin) revealed by in situ hybridization.

inferredcites →https://doi.org/10.1083/jcb.106.2.441openalex-snapshot

Developmental expression of 2ar (osteopontin) and SPARC (osteonectin) RNA as revealed by in situ hybridization

inferredcites →https://doi.org/10.1093/bioinformatics/17.8.754openalex-snapshot

MRBAYES: Bayesian inference of phylogenetic trees

inferredcites →https://doi.org/10.1093/bioinformatics/btg180openalex-snapshot

MrBayes 3: Bayesian phylogenetic inference under mixed models

inferredcites →https://doi.org/10.1093/bioinformatics/bti263openalex-snapshot

ProtTest: selection of best-fit models of protein evolution

inferredcites →https://doi.org/10.1093/emboj/17.6.1625openalex-snapshot

Crystal structure and mapping by site‐directed mutagenesis of the collagen‐binding epitope of an activated form of BM‐40/SPARC/osteonectin

inferredcites →https://doi.org/10.1093/emboj/17.7.1860openalex-snapshot

Mice deficient for the secreted glycoprotein SPARC/osteonectin/BM40 develop normally but show severe age‐onset cataract formation and disruption of the lens

inferredcites →https://doi.org/10.1093/genetics/151.4.1531openalex-snapshot

Preservation of Duplicate Genes by Complementary, Degenerative Mutations

inferredcites →https://doi.org/10.1093/molbev/msp259openalex-snapshot

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

inferredcites →https://doi.org/10.1093/nar/22.22.4673openalex-snapshot

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

inferredcites →https://doi.org/10.1101/gr.9.9.868openalex-snapshot

CAP3: A DNA Sequence Assembly Program

inferredcites →https://doi.org/10.1109/gce.2010.5676129openalex-snapshot

Creating the CIPRES Science Gateway for inference of large phylogenetic trees

inferredcites →https://doi.org/10.1111/j.1525-142x.2006.00109.xopenalex-snapshot

Molecular evolution of fibrillar collagen in chordates, with implications for the evolution of vertebrate skeletons and chordate phylogeny

inferredcites →https://doi.org/10.1111/j.1525-142x.2010.00440.xopenalex-snapshot

Two families of Xenopus tropicalis skeletal genes display well‐conserved expression patterns with mammals in spite of their highly divergent regulatory regions

inferredcites →https://doi.org/10.1128/mcb.20.2.656-660.2000openalex-snapshot

Extracellular Matrix-Associated Protein Sc1 Is Not Essential for Mouse Development

inferredcites →https://doi.org/10.1159/000102678openalex-snapshot

Gene Duplication and the Evolution of Vertebrate Skeletal Mineralization

inferredcites →https://doi.org/10.1177/002215549704500607openalex-snapshot

Cloning and Expression of Murine SC1, a Gene Product Homologous to SPARC

inferredcites →https://doi.org/10.1177/154405910708600402openalex-snapshot

Is SPARC an Evolutionarily Conserved Collagen Chaperone?

inferredcites →https://doi.org/10.1242/dev.02466openalex-snapshot

A signalling relay involving Nodal and Delta ligands acts during secondary notochord induction inCionaembryos

inferredcites →https://doi.org/10.1242/jcs.021931openalex-snapshot

Haemocyte-derived SPARC is required for collagen-IV-dependent stability of basal laminae in Drosophila embryos

inferredcites →https://doi.org/10.1359/jbmr.050815openalex-snapshot

DMP1 Depletion Decreases Bone Mineralization In Vivo: An FTIR Imaging Analysis

inferredcites →https://doi.org/10.1371/journal.pbio.0030314openalex-snapshot

Two Rounds of Whole Genome Duplication in the Ancestral Vertebrate

inferredcites →https://doi.org/10.1387/ijdb.7848827openalex-snapshot

Transient expression of SPARC in the dorsal axis of early Xenopus embryos: correlation with calcium-dependent adhesion and electrical coupling

inferredcites →https://doi.org/10.2108/zsj.27.119openalex-snapshot

Origin and Genetic Evolution of the Vertebrate Skeleton

inferredcites →https://doi.org/10.2307/2404929openalex-snapshot

Molecular Zoology: Advances, Strategies, and Protocols.

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4755772openalex-extracted

Cross-Validation of Conserved Osteoblast-Specific Enhancers Illuminates Bone Diseases and Early Skeletal Evolution

inferred← citeshttps://doi.org/10.1002/age.70166openalex-snapshot

Genes Associated With Fracture Risk in Thoroughbred Horses Have Novel Roles in Osteogenesis

inferred← citeshttps://doi.org/10.1002/jez.b.22755openalex-snapshot

SCPP Genes and Their Relatives in Gar: Rapid Expansion of Mineralization Genes in Osteichthyans

inferred← citeshttps://doi.org/10.1007/978-981-13-1002-7_17openalex-snapshot

The Origin and Early Evolution of SCPP Genes and Tissue Mineralization in Vertebrates

inferred← citeshttps://doi.org/10.1016/b978-0-12-416678-3.00059-8openalex-snapshot

References

inferred← citeshttps://doi.org/10.1016/bs.ctdb.2018.02.003openalex-snapshot

Matricellular Proteins: Functional Insights From Non-mammalian Animal Models

inferred← citeshttps://doi.org/10.1016/j.cdev.2024.203924openalex-snapshot

Xenopus tropicalis osteoblast-specific open chromatin regions reveal promoters and enhancers involved in human skeletal phenotypes and shed light on early vertebrate evolution

inferred← citeshttps://doi.org/10.1016/j.gde.2016.05.022openalex-snapshot

Tracing the evolutionary origin of vertebrate skeletal tissues: insights from cephalochordate amphioxus

inferred← citeshttps://doi.org/10.1016/j.gene.2015.05.036openalex-snapshot

Molecular cloning and characterization of the matricellular protein Sparc/osteonectin in flatfish, Scophthalmus maximus, and its developmental stage-dependent transcriptional regulation during metamorphosis

inferred← citeshttps://doi.org/10.1016/j.mod.2018.06.007openalex-snapshot

Bone regeneration after traumatic skull injury in Xenopus tropicalis

inferred← citeshttps://doi.org/10.1016/j.ydbio.2017.01.005openalex-snapshot

SPARC preserves follicular epithelium integrity in insect ovaries

inferred← citeshttps://doi.org/10.1038/srep37839openalex-snapshot

A holistic approach to dissecting SPARC family protein complexity reveals FSTL-1 as an inhibitor of pancreatic cancer cell growth

inferred← citeshttps://doi.org/10.1093/molbev/msac099openalex-snapshot

Parallel Evolution of Ameloblastic scpp Genes in Bony and Cartilaginous Vertebrates

inferred← citeshttps://doi.org/10.1093/molbev/msz060openalex-snapshot

Emergence of a Thrombospondin Superfamily at the Origin of Metazoans

inferred← citeshttps://doi.org/10.1101/2023.08.30.555543openalex-snapshot

Architecture and evolutionary conservation of Xenopus tropicalis osteoblast-specific regulatory regions shed light on bone diseases and early skeletal evolution

inferred← citeshttps://doi.org/10.1186/s12862-015-0329-xopenalex-snapshot

Amelotin: an enamel matrix protein that experienced distinct evolutionary histories in amphibians, sauropsids and mammals

inferred← citeshttps://doi.org/10.1186/s12862-018-1241-yopenalex-snapshot

Evolution of dental tissue mineralization: an analysis of the jawed vertebrate SPARC and SPARC-L families

inferred← citeshttps://doi.org/10.1387/ijdb.170219isopenalex-snapshot

Amphioxus regeneration: evolutionary and biomedical implications

inferred← citeshttps://doi.org/10.3389/fcell.2021.607057openalex-snapshot

Somite Compartments in Amphioxus and Its Implications on the Evolution of the Vertebrate Skeletal Tissues

inferred← citeshttps://doi.org/10.3389/fgene.2015.00297openalex-snapshot

On the evolutionary relationship between chondrocytes and osteoblasts

inferred← citeshttps://doi.org/10.3389/fgene.2021.788346openalex-snapshot

Divergent Expression of SPARC, SPARC-L, and SCPP Genes During Jawed Vertebrate Cartilage Mineralization

inferred← citeshttps://doi.org/10.3390/cryst10090755openalex-snapshot

Structural Biology of Calcium Phosphate Nanoclusters Sequestered by Phosphoproteins

inferred← citeshttps://doi.org/10.70675/926d644czef3bz4ce3z9fd7z6080a7628079openalex-snapshot

Rôle de la protéine matricellulaire hevin dans la réponse à la cocaïne

inferred← citeshttps://doi.org/10.70675/f6ab54aczdd6bz4392z90e2zd52fececdc17openalex-snapshot

Origine évolutive de la bio-minéralization chez les vertébrés : contributions de la biologie squelettique et développementale des chondrichthyens

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.