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Haplotypes of common SNPs can explain missing heritability of complex diseases

https://doi.org/10.1101/022418
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1001/archpsyc.60.12.1187openalex-snapshot
Schizophrenia as a Complex Trait
inferredcites →https://doi.org/10.1007/bf01066731openalex-snapshot
The investigation of linkage between a quantitative trait and a marker locus
inferredcites →https://doi.org/10.1016/j.ajhg.2010.11.011openalex-snapshot
GCTA: A Tool for Genome-wide Complex Trait Analysis
inferredcites →https://doi.org/10.1016/j.ajhg.2011.02.002openalex-snapshot
Estimating Missing Heritability for Disease from Genome-wide Association Studies
inferredcites →https://doi.org/10.1016/j.ajhg.2011.11.029openalex-snapshot
Five Years of GWAS Discovery
inferredcites →https://doi.org/10.1016/j.ajhg.2012.06.013openalex-snapshot
Phasing of Many Thousands of Genotyped Samples
inferredcites →https://doi.org/10.1016/j.ajhg.2012.10.010openalex-snapshot
Improved Heritability Estimation from Genome-wide SNPs
inferredcites →https://doi.org/10.1016/j.ajhg.2013.10.015openalex-snapshot
Estimation of SNP Heritability from Dense Genotype Data
inferredcites →https://doi.org/10.1038/456018aopenalex-snapshot
Personal genomes: The case of the missing heritability
inferredcites →https://doi.org/10.1038/nature08494openalex-snapshot
Finding the missing heritability of complex diseases
inferredcites →https://doi.org/10.1038/nature10251openalex-snapshot
Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis
inferredcites →https://doi.org/10.1038/nature11632openalex-snapshot
An integrated map of genetic variation from 1,092 human genomes
inferredcites →https://doi.org/10.1038/nature13595openalex-snapshot
Biological insights from 108 schizophrenia-associated genetic loci
inferredcites →https://doi.org/10.1038/ng.1108openalex-snapshot
Estimating the proportion of variation in susceptibility to schizophrenia captured by common SNPs
inferredcites →https://doi.org/10.1038/ng.2876openalex-snapshot
Advantages and pitfalls in the application of mixed-model association methods
inferredcites →https://doi.org/10.1038/ng.3139openalex-snapshot
Leveraging population admixture to characterize the heritability of complex traits
inferredcites →https://doi.org/10.1038/ng.3285openalex-snapshot
Meta-analysis of the heritability of human traits based on fifty years of twin studies
inferredcites →https://doi.org/10.1038/ng.3390openalex-snapshot
Genetic variance estimation with imputed variants finds negligible missing heritability for human height and body mass index
inferredcites →https://doi.org/10.1038/ng.3431openalex-snapshot
Contrasting genetic architectures of schizophrenia and other complex diseases using fast variance-components analysis
inferredcites →https://doi.org/10.1038/ng.608openalex-snapshot
Common SNPs explain a large proportion of the heritability for human height
inferredcites →https://doi.org/10.1038/ng1653openalex-snapshot
Population structure, differential bias and genomic control in a large-scale, case-control association study
inferredcites →https://doi.org/10.1038/nmeth.1785openalex-snapshot
A linear complexity phasing method for thousands of genomes
inferredcites →https://doi.org/10.1038/nrg2796openalex-snapshot
Genotype imputation for genome-wide association studies
inferredcites →https://doi.org/10.1038/nrg2865openalex-snapshot
Reconciling the analysis of IBD and IBS in complex trait studies
inferredcites →https://doi.org/10.1038/nrg3118openalex-snapshot
Rare and common variants: twenty arguments
inferredcites →https://doi.org/10.1073/pnas.1119675109openalex-snapshot
The mystery of missing heritability: Genetic interactions create phantom heritability
inferredcites →https://doi.org/10.1073/pnas.1419064111openalex-snapshot
Measuring missing heritability: Inferring the contribution of common variants
inferredcites →https://doi.org/10.1093/bioinformatics/bts474openalex-snapshot
Estimation of pleiotropy between complex diseases using single-nucleotide polymorphism-derived genomic relationships and restricted maximum likelihood
inferredcites →https://doi.org/10.1093/genetics/111.1.147openalex-snapshot
STATISTICAL PROPERTIES OF THE NUMBER OF RECOMBINATION EVENTS IN THE HISTORY OF A SAMPLE OF DNA SEQUENCES
inferredcites →https://doi.org/10.1093/hmg/dds491openalex-snapshot
Estimation and partitioning of polygenic variation captured by common SNPs for Alzheimer's disease, multiple sclerosis and endometriosis
inferredcites →https://doi.org/10.1101/016527openalex-snapshot
Contrasting regional architectures of schizophrenia and other complex diseases using fast variance components analysis
inferredcites →https://doi.org/10.1111/j.2517-6161.1995.tb02031.xopenalex-snapshot
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
inferredcites →https://doi.org/10.1371/journal.pgen.1000008openalex-snapshot
Data and Theory Point to Mainly Additive Genetic Variance for Complex Traits
inferredcites →https://doi.org/10.1371/journal.pgen.1000529openalex-snapshot
A Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies
inferredcites →https://doi.org/10.1371/journal.pgen.1000534openalex-snapshot
Identifying relationships among genomic disease regions: predicting= pathogenic SNP associations and rare deletions
inferredcites →https://doi.org/10.1371/journal.pgen.1001317openalex-snapshot
Single-Tissue and Cross-Tissue Heritability of Gene Expression Via Identity-by-Descent in Related or Unrelated Individuals
inferredcites →https://doi.org/10.1371/journal.pgen.1003993openalex-snapshot
Quantifying Missing Heritability at Known GWAS Loci

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s11121-017-0785-1openalex-snapshot
Critical Issues in the Inclusion of Genetic and Epigenetic Information in Prevention and Intervention Trials
inferred← citeshttps://doi.org/10.1007/s40471-015-0055-3openalex-snapshot
Polygenic Scores in Epidemiology: Risk Prediction, Etiology, and Clinical Utility
inferred← citeshttps://doi.org/10.1038/ncomms9712openalex-snapshot
Genetic interactions contribute less than additive effects to quantitative trait variation in yeast
inferred← citeshttps://doi.org/10.1038/ng.3446openalex-snapshot
The contribution of rare variation to prostate cancer heritability
inferred← citeshttps://doi.org/10.1038/ng.3461openalex-snapshot
Abundant contribution of short tandem repeats to gene expression variation in humans
inferred← citeshttps://doi.org/10.1038/ng.3865openalex-snapshot
Reevaluation of SNP heritability in complex human traits
inferred← citeshttps://doi.org/10.1038/s41437-017-0023-4openalex-snapshot
A novel linkage-disequilibrium corrected genomic relationship matrix for SNP-heritability estimation and genomic prediction
inferred← citeshttps://doi.org/10.1038/s41467-018-05510-zopenalex-snapshot
Genome-wide association study results for educational attainment aid in identifying genetic heterogeneity of schizophrenia
inferred← citeshttps://doi.org/10.1038/s41467-024-55477-3openalex-snapshot
Leveraging haplotype information in heritability estimation and polygenic prediction
inferred← citeshttps://doi.org/10.1093/med/9780197676592.003.0011openalex-snapshot
Brain Diseases Associated with Unstable Repeats
inferred← citeshttps://doi.org/10.1101/028282openalex-snapshot
Fast and accurate long-range phasing in a UK Biobank cohort
inferred← citeshttps://doi.org/10.1101/114405openalex-snapshot
Genome-wide association study results for educational attainment aid in identifying genetic heterogeneity of schizophrenia
inferred← citeshttps://doi.org/10.1161/circgenetics.116.001643openalex-snapshot
Genetic Analysis of Venous Thromboembolism in UK Biobank Identifies the ZFPM2 Locus and Implicates Obesity as a Causal Risk Factor
inferred← citeshttps://doi.org/10.1186/s13059-016-1051-8openalex-snapshot
Novel regional age-associated DNA methylation changes within human common disease-associated loci
inferred← citeshttps://doi.org/10.1214/17-ejs1386openalex-snapshot
Statistical properties of simple random-effects models for genetic heritability
inferred← citeshttps://doi.org/10.1534/genetics.120.303161openalex-snapshot
On Negative Heritability and Negative Estimates of Heritability
inferred← citeshttps://doi.org/10.3390/genes10080558openalex-snapshot
GWEHS: A Genome-Wide Effect Sizes and Heritability Screener
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