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Spread of the pandemic Zika virus lineage is associated with NS1 codon usage adaptation in humans
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1001/jama.2014.9916openalex-snapshot
Chikungunya Virus Transmission Found in the United States
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Exact and efficient analytical calculation of the accessible surface areas and their gradients for macromolecules
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New ways to boost molecular dynamics simulations
inferredcites →https://doi.org/10.1007/0-387-27733-1_6openalex-snapshot
HyPhy: Hypothesis Testing Using Phylogenies
inferredcites →https://doi.org/10.1007/s00239-001-0034-9openalex-snapshot
The Effect of Recombination on the Accuracy of Phylogeny Estimation
inferredcites →https://doi.org/10.1016/0035-9203(56)90090-6openalex-snapshot
Zika virus infection experimentally induced in a human volunteer
inferredcites →https://doi.org/10.1016/0378-1119(90)90491-9openalex-snapshot
The ‘effective number of codons’ used in a gene
inferredcites →https://doi.org/10.1016/j.antiviral.2013.03.008openalex-snapshot
The flavivirus NS1 protein: Molecular and structural biology, immunology, role in pathogenesis and application as a diagnostic biomarker
inferredcites →https://doi.org/10.1016/j.cell.2015.07.020openalex-snapshot
Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus
inferredcites →https://doi.org/10.1016/j.coviro.2015.03.013openalex-snapshot
Computational tools for epitope vaccine design and evaluation
inferredcites →https://doi.org/10.1016/j.ijid.2014.03.411openalex-snapshot
Molecular evolution of Zika virus during its emergence in the 20th century
inferredcites →https://doi.org/10.1016/j.ymed.2015.06.050openalex-snapshot
10.1016/j.ymed.2015.06.050
inferredcites →https://doi.org/10.1016/s0168-1702(02)00309-xopenalex-snapshot
The extent of codon usage bias in human RNA viruses and its evolutionary origin
inferredcites →https://doi.org/10.1016/s0168-9525(00)02024-2openalex-snapshot
EMBOSS: The European Molecular Biology Open Software Suite
inferredcites →https://doi.org/10.1038/msb.2009.71openalex-snapshot
Viral adaptation to host: a proteome‐based analysis of codon usage and amino acid preferences
inferredcites →https://doi.org/10.1038/nrg2899openalex-snapshot
Synonymous but not the same: the causes and consequences of codon bias
inferredcites →https://doi.org/10.1038/nrmicro2440openalex-snapshot
Identifying genetic markers of adaptation for surveillance of viral host jumps
inferredcites →https://doi.org/10.1056/nejmoa0805715openalex-snapshot
Zika Virus Outbreak on Yap Island, Federated States of Micronesia
inferredcites →https://doi.org/10.1074/jbc.m110.192500openalex-snapshot
Flavivirus NS4A-induced Autophagy Protects Cells against Death and Enhances Virus Replication
inferredcites →https://doi.org/10.1089/cmb.2009.0046openalex-snapshot
Categorizing Host-Dependent RNA Viruses by Principal Component Analysis of Their Codon Usage Preferences
inferredcites →https://doi.org/10.1093/bioinformatics/bti079openalex-snapshot
HyPhy: hypothesis testing using phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btl117openalex-snapshot
Pvclust: an R package for assessing the uncertainty in hierarchical clustering
inferredcites →https://doi.org/10.1093/bioinformatics/btq467openalex-snapshot
RDP3: a flexible and fast computer program for analyzing recombination
inferredcites →https://doi.org/10.1093/bioinformatics/btu531openalex-snapshot
AliView: a fast and lightweight alignment viewer and editor for large datasets
inferredcites →https://doi.org/10.1093/molbev/msh109openalex-snapshot
A Large Variation in the Rates of Synonymous Substitution for RNA Viruses and Its Relationship to a Diversity of Viral Infection and Transmission Modes
inferredcites →https://doi.org/10.1093/molbev/msh172openalex-snapshot
A Large Variation in the Rates of Synonymous Substitution for RNA Viruses and Its Relationship to a Diversity of Viral Infection and Transmission Modes
inferredcites →https://doi.org/10.1093/molbev/msj021openalex-snapshot
Choosing Appropriate Substitution Models for the Phylogenetic Analysis of Protein-Coding Sequences
inferredcites →https://doi.org/10.1093/molbev/msn090openalex-snapshot
Smooth Skyride through a Rough Skyline: Bayesian Coalescent-Based Inference of Population Dynamics
inferredcites →https://doi.org/10.1093/molbev/msp259openalex-snapshot
SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building
inferredcites →https://doi.org/10.1093/molbev/msr170openalex-snapshot
Purifying Selection Can Obscure the Ancient Age of Viral Lineages
inferredcites →https://doi.org/10.1093/molbev/mss075openalex-snapshot
Bayesian Phylogenetics with BEAUti and the BEAST 1.7
inferredcites →https://doi.org/10.1093/nar/14.13.5125openalex-snapshot
Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes
inferredcites →https://doi.org/10.1093/nar/15.3.1281openalex-snapshot
The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications
inferredcites →https://doi.org/10.1093/nar/28.1.292openalex-snapshot
Codon usage tabulated from international DNA sequence databases: status for the year 2000
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1107/s0021889892009944openalex-snapshot
PROCHECK: a program to check the stereochemical quality of protein structures
inferredcites →https://doi.org/10.1109/bibe.2012.6399736openalex-snapshot
Bio-Linux as a tool for bioinformatics training
inferredcites →https://doi.org/10.1110/ps.062405906openalex-snapshot
Prediction of residues in discontinuous B‐cell epitopes using protein 3D structures
inferredcites →https://doi.org/10.1111/1469-0691.12707openalex-snapshot
Rapid spread of emerging Zika virus in the Pacific area
inferredcites →https://doi.org/10.1128/cdli.7.5.856-857.2000openalex-snapshot
Human Dengue Antibodies against Structural and Nonstructural Proteins
inferredcites →https://doi.org/10.1128/jvi.72.1.73-83.1998openalex-snapshot
Phylogeny of the Genus Flavivirus
inferredcites →https://doi.org/10.1128/jvi.73.6.4611-4621.1999openalex-snapshot
Genetic Interaction of Flavivirus Nonstructural Proteins NS1 and NS4A as a Determinant of Replicase Function
inferredcites →https://doi.org/10.1186/1745-6150-3-38openalex-snapshot
CAIcal: A combined set of tools to assess codon usage adaptation
inferredcites →https://doi.org/10.1186/1745-7580-2-2openalex-snapshot
Improved method for predicting linear B-cell epitopes.
inferredcites →https://doi.org/10.1371/journal.pntd.0002636openalex-snapshot
Molecular Evolution of Zika Virus during Its Emergence in the 20th Century
inferredcites →https://doi.org/10.1371/journal.pntd.0002681openalex-snapshot
Zika Virus in Gabon (Central Africa) – 2007: A New Threat from Aedes albopictus?
inferredcites →https://doi.org/10.1371/journal.pone.0022594openalex-snapshot
MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
inferredcites →https://doi.org/10.1371/journal.ppat.1004395openalex-snapshot
The Evolution and Genetics of Virus Host Shifts
inferredcites →https://doi.org/10.1586/14760584.2013.815412openalex-snapshot
Dengue vaccines: recent developments, ongoing challenges and current candidates
inferredcites →https://doi.org/10.1590/0074-02760150192openalex-snapshot
First report of autochthonous transmission of Zika virus in Brazil
inferredcites →https://doi.org/10.2807/1560-7917.es2014.19.13.20751openalex-snapshot
Evidence of perinatal transmission of Zika virus, French Polynesia, December 2013 and February 2014
inferredcites →https://doi.org/10.2807/1560-7917.es2014.19.41.20929openalex-snapshot
Concurrent outbreaks of dengue, chikungunya and Zika virus infections – an unprecedented epidemic wave of mosquito-borne viruses in the Pacific 2012–2014
inferredcites →https://doi.org/10.2807/1560-7917.es2015.20.17.21108openalex-snapshot
Chikungunya outbreak in Montpellier, France, September to October 2014
inferredcites →https://doi.org/10.2807/1560-7917.es2015.20.23.21153openalex-snapshot
Zika virus infection in a traveller returning to Europe from Brazil, March 2015
inferredcites →https://doi.org/10.3201/eid1408.080287openalex-snapshot
Genetic and Serologic Properties of Zika Virus Associated with an Epidemic, Yap State, Micronesia, 2007
inferredcites →https://doi.org/10.3201/eid1705.101873openalex-snapshot
Chikungunya Virus, Southeastern France
inferredcites →https://doi.org/10.3201/eid1705.101939openalex-snapshot
Probable Non–Vector-borne Transmission of Zika Virus, Colorado, USA
inferredcites →https://doi.org/10.3201/eid2006.140138openalex-snapshot
Zika Virus, French Polynesia, South Pacific, 2013
inferredcites →https://doi.org/10.3201/eid2011.141380openalex-snapshot
Zika Virus, French Polynesia, South Pacific, 2013
inferredcites →https://doi.org/10.3201/eid2110.150847openalex-snapshot
Zika Virus Outbreak, Bahia, Brazil
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1002/9781119194521.ch7openalex-snapshot
Emerging Infectious Diseases
inferred← citeshttps://doi.org/10.1002/med.21786openalex-snapshot
Recent progresses and remaining challenges for the detection of Zika virus
inferred← citeshttps://doi.org/10.1007/5584_2016_187openalex-snapshot
Emerging Zika Virus Infection: A Rapidly Evolving Situation
inferred← citeshttps://doi.org/10.1007/s00381-017-3641-5openalex-snapshot
Challenges for molecular and serological ZIKV infection confirmation
inferred← citeshttps://doi.org/10.1007/s00705-017-3324-2openalex-snapshot
A detailed analysis of codon usage patterns and influencing factors in Zika virus
inferred← citeshttps://doi.org/10.1007/s10709-022-00155-9openalex-snapshot
Human genes with codon usage bias similar to that of the nonstructural protein 1 gene of influenza A viruses are conjointly involved in the infectious pathogenesis of influenza A viruses
inferred← citeshttps://doi.org/10.1007/s12035-017-0635-yopenalex-snapshot
Zika Virus as an Emerging Neuropathogen: Mechanisms of Neurovirulence and Neuro-Immune Interactions
inferred← citeshttps://doi.org/10.1007/s12539-017-0238-3openalex-snapshot
Discovery of T-cell Driven Subunit Vaccines from Zika Virus Genome: An Immunoinformatics Approach
inferred← citeshttps://doi.org/10.1007/s15010-016-0935-6openalex-snapshot
Zika virus disease: a current review of the literature
inferred← citeshttps://doi.org/10.1007/s42770-023-01053-8openalex-snapshot
African ZIKV lineage fails to sustain infectivity in an in vitro mimetic urban cycle
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Chikungunya Virus and Zika Virus in Europe
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Analysis of synonymous codon usage in Zika virus
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A new looming of Zika virus
inferred← citeshttps://doi.org/10.1016/j.apjtm.2017.03.020openalex-snapshot
Advances in research on Zika virus
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An updated review of Zika virus
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Zika fever and congenital Zika syndrome: An unexpected emerging arboviral disease
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Microcephaly and Zika virus: a clinical and epidemiological analysis of the current outbreak in Brazil
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Microcephaly and Zika virus: a clinical and epidemiological analysis of the current outbreak in Brazil
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Biodiversity and health: Lessons and recommendations from an interdisciplinary conference to advise Southeast Asian research, society and policy
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Codon adaptation biases among sylvatic and urban genotypes of Dengue virus type 2
inferred← citeshttps://doi.org/10.1016/j.micinf.2016.03.003openalex-snapshot
Zika virus – an overview
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Immune-related gene polymorphisms in pulmonary diseases
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Identification of Zika virus vectors and implications for control
inferred← citeshttps://doi.org/10.1038/cmi.2017.142openalex-snapshot
Guillain–Barré syndrome, transverse myelitis and infectious diseases
inferred← citeshttps://doi.org/10.1038/emi.2016.106openalex-snapshot
Evolution of codon usage in Zika virus genomes is host and vector specific
inferred← citeshttps://doi.org/10.1038/emi.2016.48openalex-snapshot
Comparative genomic analysis of pre-epidemic and epidemic Zika virus strains for virological factors potentially associated with the rapidly expanding epidemic
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The Brazilian Zika virus strain causes birth defects in experimental models
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Modeling Zika Virus Transmission Dynamics: Parameter Estimates, Disease Characteristics, and Prevention
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Spread of Zika virus in the Americas
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The spread of Zika and the potential for global arbovirus syndemics
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Zika Virus: Implications for Public Health
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Impact of the biased nucleotide composition of viral RNA genomes on RNA structure and codon usage
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Zika Virus: Endemic Versus Epidemic Dynamics and Implications for Disease Spread in the Americas
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Zika virus outbreak in the Americas: Is Aedes albopictus an overlooked culprit?
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A Zika virus-associated microcephaly case with background exposure to STORCH agents
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Projected spread of Zika virus in the Americas
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Arbovirus epidemics and blood safety in Brazil
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Assessing the global threat from Zika virus
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Mapeamento de epitopos das proteínas do vírus Zika na interação materno-infantil pelo método de Spot-synthesis.
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Análise fenótipo-patogênica da infecção pelo vírus Zika em células humanas neurais in vitro
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Nucleotide composition of the Zika virus RNA genome and its codon usage
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The Zika Pandemic - A Perfect Storm?
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Full Genome Sequence and sfRNA Interferon Antagonist Activity of Zika Virus from Recife, Brazil
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A low technology emanator treated with the volatile pyrethroid transfluthrin confers long term protection against outdoor biting vectors of lymphatic filariasis, arboviruses and malaria
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Scoping Review of the Zika Virus Literature
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Analysis of Synonymous Codon Usage Bias of Zika Virus and Its Adaption to the Hosts
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Does adaptation to vertebrate codon usage relate to flavivirus emergence potential?
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The Epidemic that Shook the World—The Zika Virus Rampage
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Zika puzzle in Brazil: peculiar conditions of viral introduction and dissemination - A Review
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Tracing the origin of the NS1 A188V substitution responsible for recent enhancement of Zika virus Asian genotype infectivity
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NS1 codon usage adaptation to humans in pandemic Zika virus
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Arboviruses emerging in Brazil: challenges for clinic and implications for public health
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Modeling contagion processes on multi-scale complex systems
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ASPECTOS RELEVANTES SOBRE O DIAGNÓSTICO DO ZIKA VÍRUS
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Zika virus non-structural proteins B-cell epitope mapping in mother-newborn immune interaction
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Emergence and Spreading Potential of Zika Virus
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Advances in Developing Therapies to Combat Zika Virus: Current Knowledge and Future Perspectives
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Full-Genome Characterization and Genetic Evolution of West African Isolates of Bagaza Virus
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Probing Molecular Insights into Zika Virus–Host Interactions
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Emerging mosquito-borne arboviral infection Zika - An epidemiological review
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Article Commentary: Archival Collections are Important in the Study of the Biology, Diversity, and Evolution of Arboviruses
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Zika: what we do and do not know based on the experiences of Brazil
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Development of a TaqMan minor groove binding probe-based quantitative reverse transcription polymerase chain reaction for the detection and quantification of Zika virus
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The Vector Potential of the Mosquito Aedes koreicus
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Neurological manifestations of Zika virus infection
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Zika Virus, Microcephaly and its Possible Global Spread
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Undestanding the viral molecular factors involved in Zika virus pathogenicity in humans
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