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Sequenceserver: a modern graphical user interface for custom BLAST databases

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Software Engineering with Reusable Components

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The Next-Generation Sequencing Revolution and Its Impact on Genomics

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A genome-wide survey of small interfering RNA and microRNA pathway genes in a galling insect

inferredcites →https://doi.org/10.1016/j.tree.2013.09.008openalex-snapshot

Genome sequencing and population genomics in non-model organisms

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Neuropeptides and polypeptide hormones in echinoderms: New insights from analysis of the transcriptome of the sea cucumber Apostichopus japonicus

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Comparative analysis reveals loss of the appetite-regulating peptide hormone ghrelin in falcons

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Basic Local Alignment Search Tool

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Introduction to Software Testing

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Introduction to Software Testing

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X-ray structure of a ClC chloride channel at 3.0 Å reveals the molecular basis of anion selectivity

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Metagenomics

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Comparative genomics of chemosensory protein genes reveals rapid evolution and positive selection in ant-specific duplicates

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The anatomy of successful computational biology software

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Transposable element islands facilitate adaptation to novel environments in an invasive species

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Visualizing genomes: techniques and challenges

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Fast and sensitive protein alignment using DIAMOND

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Data sharing in genomics — re-shaping scientific practice

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Genomics and the origin of species

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BLAST output visualization in the new sequencing era

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Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

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NOBLAST and JAMBLAST: New Options for BLAST and a Java Application Manager for BLAST results

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Kablammo: an interactive, web-based BLAST results visualizer

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LCR-eXXXplorer: a web platform to search, visualize and share data for low complexity regions in protein sequences

inferredcites →https://doi.org/10.1093/nar/25.17.3389openalex-snapshot

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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NCBI BLAST: a better web interface

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The Apache HTTP Server Project

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Identification and Heterologous Expression of the Chaxamycin Biosynthesis Gene Cluster from Streptomyces leeuwenhoekii

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SymGRASS: a database of sugarcane orthologous genes involved in arbuscular mycorrhiza and root nodule symbiosis : from Seventh International Meeting on Computational Intelligence Methods for Bioinformatics and Biostatistics, (CIBB 2010), Palermo, Italy, 16 - 18 September 2010

inferredcites →https://doi.org/10.1186/1471-2105-15-128openalex-snapshot

BLASTGrabber: a bioinformatic tool for visualization, analysis and sequence selection of massive BLAST data

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Batch Blast Extractor: an automated blastx parser application

inferredcites →https://doi.org/10.1186/gb-2008-9-6-r102openalex-snapshot

GMODWeb: a web framework for the generic model organism database

inferredcites →https://doi.org/10.1186/s12864-015-1248-3openalex-snapshot

De novo assembly and characterization of transcriptomes of early-stage fruit from two genotypes of Annona squamosa L. with contrast in seed number

inferredcites →https://doi.org/10.1186/s13742-015-0080-7openalex-snapshot

NCBI BLAST+ integrated into Galaxy

inferredcites →https://doi.org/10.1242/jeb.092171openalex-snapshot

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inferredcites →https://doi.org/10.1371/journal.pbio.1001745openalex-snapshot

Best Practices for Scientific Computing

inferredcites →https://doi.org/10.1371/journal.pcbi.1002554openalex-snapshot

Bioinformatics Meets User-Centred Design: A Perspective

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Ten Simple Rules for the Open Development of Scientific Software

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Odorant Binding Proteins of the Red Imported Fire Ant, Solenopsis invicta: An Example of the Problems Facing the Analysis of Widely Divergent Proteins

inferredcites →https://doi.org/10.1371/journal.pone.0045715openalex-snapshot

The Molecular Clockwork of the Fire Ant Solenopsis invicta

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The Evolution and Diversity of SALMFamide Neuropeptides

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De Novo Assembly of the Transcriptome of the Non-Model Plant Streptocarpus rexii Employing a Novel Heuristic to Recover Locus-Specific Transcript Clusters

inferredcites →https://doi.org/10.1371/journal.pone.0101144openalex-snapshot

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inferredcites →https://doi.org/10.3762/bjnano.5.112openalex-snapshot

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Incoming claims: where this work appears in other papers’ reference lists and arguments.

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inferred← citeshttps://doi.org/10.1534/g3.119.400388openalex-snapshot

Greenlip Abalone (Haliotis laevigata) Genome and Protein Analysis Provides Insights into Maturation and Spawning

inferred← citeshttps://doi.org/10.21273/jashs05362-23openalex-snapshot

Genetic Analyses of the Shape and Volume of Onion Bulbs and Daylength Effects on Bulbing

inferred← citeshttps://doi.org/10.22541/au.163845474.49811073/v1openalex-snapshot

easyfm: An easy software suite for file manipulation of Next Generation Sequencing data on desktops

inferred← citeshttps://doi.org/10.3168/jds.2018-14438openalex-snapshot

Pseudomonas fluorescens group bacterial strains are responsible for repeat and sporadic postpasteurization contamination and reduced fluid milk shelf life

inferred← citeshttps://doi.org/10.3168/jds.2020-18186openalex-snapshot

Interventions designed to control postpasteurization contamination in high-temperature, short-time-pasteurized fluid milk processing facilities: A case study on the effect of employee training, clean-in-place chemical modification, and preventive maintenance programs

inferred← citeshttps://doi.org/10.3389/fgene.2019.00137openalex-snapshot

Interplay of Chimeric Mating-Type Loci Impairs Fertility Rescue and Accounts for Intra-Strain Variability in Zygosaccharomyces rouxii Interspecies Hybrid ATCC42981

inferred← citeshttps://doi.org/10.3390/agronomy8090181openalex-snapshot

Genome-Wide Mining and Characterization of SSR Markers for Gene Mapping and Gene Diversity in Gossypium barbadense L. and Gossypium darwinii G. Watt Accessions

inferred← citeshttps://doi.org/10.3390/ijms19082401openalex-snapshot

Assessment of Genetic Diversity, Population Structure, and Evolutionary Relationship of Uncharacterized Genes in a Novel Germplasm Collection of Diploid and Allotetraploid Gossypium Accessions Using EST and Genomic SSR Markers

inferred← citeshttps://doi.org/10.70675/4193c885z9d9az4014z9a91z7219d45c2ab8openalex-snapshot

Dynamique des éléments transposables et évolution du génome des spartines polyploïdes

inferred← citeshttps://doi.org/10.70675/7c025bfczef1cz4affz89d0z0cbb6521782aopenalex-snapshot

Structural and functional insights into the substrate specificity of OXA-48-like carbapenemases

inferred← citeshttps://doi.org/10.7554/elife.36495openalex-snapshot

Firefly genomes illuminate parallel origins of bioluminescence in beetles

inferred← citeshttps://doi.org/10.7554/elife.57640openalex-snapshot

Echinoderms provide missing link in the evolution of PrRP/sNPF-type neuropeptide signalling

inferred← citeshttps://doi.org/10.7554/elife.65667openalex-snapshot

Ancient role of sulfakinin/cholecystokinin-type signalling in inhibitory regulation of feeding processes revealed in an echinoderm

inferred← citeshttps://doi.org/10.7717/peerj.5438openalex-snapshot

Disentangling the mechanisms of mate choice in a captive koala population

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