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BioJS: an open source JavaScript framework for biological data visualization

https://doi.org/10.1093/bioinformatics/btt100
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1093/bioinformatics/btn397openalex-snapshot
BioJava: an open-source framework for bioinformatics
inferredcites →https://doi.org/10.1093/bioinformatics/btp163openalex-snapshot
Biopython: freely available Python tools for computational molecular biology and bioinformatics
inferredcites →https://doi.org/10.1093/bioinformatics/btq475openalex-snapshot
BioRuby: bioinformatics software for the Ruby programming language
inferredcites →https://doi.org/10.1093/bioinformatics/bts494openalex-snapshot
BioJava: an open-source framework for bioinformatics in 2012
inferredcites →https://doi.org/10.1093/nar/gkq1001openalex-snapshot
Extending CATH: increasing coverage of the protein structure universe and linking structure with function
inferredcites →https://doi.org/10.1093/nar/gkr1088openalex-snapshot
The IntAct molecular interaction database in 2012
inferredcites →https://doi.org/10.1101/gr.361602openalex-snapshot
The Bioperl Toolkit: Perl Modules for the Life Sciences

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.5281/zenodo.7719zenodo-depositor-declared
BioJS Feature Viewer
inferred← citeshttps://doi.org/10.1002/1873-3468.12778openalex-snapshot
Challenges for visualizing three‐dimensional data in genomic browsers
inferred← citeshttps://doi.org/10.1002/pmic.201400377openalex-snapshot
Open source libraries and frameworks for biological data visualisation: A guide for developers
inferred← citeshttps://doi.org/10.1007/978-3-030-06016-9_3openalex-snapshot
Construction and Visualization of Dynamic Biological Networks: Benchmarking the Neo4J Graph Database
inferred← citeshttps://doi.org/10.1007/978-3-319-23983-5_5openalex-snapshot
A Grid-Enabled Modular Framework for Efficient Sequence Analysis Workflows
inferred← citeshttps://doi.org/10.1007/978-981-10-5903-2_35openalex-snapshot
RNA: Structure, Prediction, and Visualization Tools
inferred← citeshttps://doi.org/10.1007/978-981-32-9816-3_11openalex-snapshot
Analysing Cancer Signalling Pathways: A Structural Bioinformatics Approach
inferred← citeshttps://doi.org/10.1007/978-981-97-5734-3_12openalex-snapshot
Harnessing Big Data Visualization in Bioinformatics: From Data to Discovery
inferred← citeshttps://doi.org/10.1016/j.bbapap.2016.08.001openalex-snapshot
Prediction of kinase-specific phosphorylation sites through an integrative model of protein context and sequence
inferred← citeshttps://doi.org/10.1016/j.jsb.2016.02.007openalex-snapshot
3DBIONOTES: A unified, enriched and interactive view of macromolecular information
inferred← citeshttps://doi.org/10.1016/j.ygeno.2020.08.010openalex-snapshot
BMT: Bioinformatics mini toolbox for comprehensive DNA and protein analysis
inferred← citeshttps://doi.org/10.1021/acssynbio.8b00338openalex-snapshot
sboljs: Bringing the Synthetic Biology Open Language to the Web Browser
inferred← citeshttps://doi.org/10.1038/s42003-018-0091-xopenalex-snapshot
The HTPmod Shiny application enables modeling and visualization of large-scale biological data
inferred← citeshttps://doi.org/10.1093/bib/bbae367openalex-snapshot
Haxe as a Swiss knife for bioinformatic applications: the SeqPHASE case story
inferred← citeshttps://doi.org/10.1093/bib/bby019openalex-snapshot
Interactive and coordinated visualization approaches for biological data analysis
inferred← citeshttps://doi.org/10.1093/bioinformatics/btu567openalex-snapshot
Visualization of protein sequence features using JavaScript and SVG with pViz.js
inferred← citeshttps://doi.org/10.1093/bioinformatics/btw119openalex-snapshot
Visual Omics Explorer (VOE): a cross-platform portal for interactive data visualization
inferred← citeshttps://doi.org/10.1093/bioinformatics/btw210openalex-snapshot
TnT: a set of libraries for visualizing trees and track-based annotations for the web
inferred← citeshttps://doi.org/10.1093/bioinformatics/btw800openalex-snapshot
myGenomeBrowser: building and sharing your own genome browser
inferred← citeshttps://doi.org/10.1093/bioinformatics/btx137openalex-snapshot
SmartR: an open-source platform for interactive visual analytics for translational research data
inferred← citeshttps://doi.org/10.1093/bioinformatics/bty549openalex-snapshot
SATurn: a modular bioinformatics framework for the design of robust maintainable web-based and standalone applications
inferred← citeshttps://doi.org/10.1093/database/baw014openalex-snapshot
HistoneDB 2.0: a histone database with variants—an integrated resource to explore histones and their variants
inferred← citeshttps://doi.org/10.1093/gigascience/gix022openalex-snapshot
ReGaTE: Registration of Galaxy Tools in Elixir
inferred← citeshttps://doi.org/10.1093/nar/gkab565openalex-snapshot
TRAPID 2.0: a web application for taxonomic and functional analysis of de novo transcriptomes
inferred← citeshttps://doi.org/10.1093/nar/gkt1175openalex-snapshot
RepeatsDB: a database of tandem repeat protein structures
inferred← citeshttps://doi.org/10.1093/nar/gkt1205openalex-snapshot
Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis
inferred← citeshttps://doi.org/10.1093/nar/gkt1243openalex-snapshot
The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes
inferred← citeshttps://doi.org/10.1093/nar/gku1091openalex-snapshot
MatrixDB, the extracellular matrix interaction database: updated content, a new navigator and expanded functionalities
inferred← citeshttps://doi.org/10.1093/nar/gku1200openalex-snapshot
Araport: the Arabidopsis Information Portal
inferred← citeshttps://doi.org/10.1093/nar/gku366openalex-snapshot
PredictProtein—an open resource for online prediction of protein structural and functional features
inferred← citeshttps://doi.org/10.1093/nar/gkv1116openalex-snapshot
Tools and data services registry: a community effort to document bioinformatics resources
inferred← citeshttps://doi.org/10.1093/nar/gkv1141openalex-snapshot
Information Commons for Rice (IC4R)
inferred← citeshttps://doi.org/10.1093/nar/gkv1231openalex-snapshot
Gene3D: expanding the utility of domain assignments
inferred← citeshttps://doi.org/10.1093/nar/gkv279openalex-snapshot
The EMBL-EBI bioinformatics web and programmatic tools framework
inferred← citeshttps://doi.org/10.1093/nar/gkw199openalex-snapshot
g:Profiler—a web server for functional interpretation of gene lists (2016 update)
inferred← citeshttps://doi.org/10.1093/nar/gkw233openalex-snapshot
HaploGrep 2: mitochondrial haplogroup classification in the era of high-throughput sequencing
inferred← citeshttps://doi.org/10.1093/nar/gkw289openalex-snapshot
GIANT API: an application programming interface for functional genomics
inferred← citeshttps://doi.org/10.1093/nar/gkx1002openalex-snapshot
PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics
inferred← citeshttps://doi.org/10.1093/nar/gkx1070openalex-snapshot
PDBe: towards reusable data delivery infrastructure at protein data bank in Europe
inferred← citeshttps://doi.org/10.1093/nar/gkx237openalex-snapshot
The Proteins API: accessing key integrated protein and genome information
inferred← citeshttps://doi.org/10.1093/nar/gkx977openalex-snapshot
panX: pan-genome analysis and exploration
inferred← citeshttps://doi.org/10.1093/nar/gky379openalex-snapshot
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
inferred← citeshttps://doi.org/10.1097/bcr.0000000000000618openalex-snapshot
Comparison of Pain Severity and Management in Burn and Nonburn Trauma Patients
inferred← citeshttps://doi.org/10.1101/032573openalex-snapshot
BioJS-HGV Viewer: Genetic Variation Visualizer
inferred← citeshttps://doi.org/10.1101/033142openalex-snapshot
Sequenceserver: a modern graphical user interface for custom BLAST databases
inferred← citeshttps://doi.org/10.1101/072082openalex-snapshot
panX: pan-genome analysis and exploration
inferred← citeshttps://doi.org/10.1101/326470openalex-snapshot
The UCSC Xena platform for public and private cancer genomics data visualization and interpretation
inferred← citeshttps://doi.org/10.1101/677658openalex-snapshot
TGAC Browser: An open-source genome browser for non-model organisms
inferred← citeshttps://doi.org/10.1109/mercon.2019.8818781openalex-snapshot
An Adapter Architecture for Heterogeneous Data Processing in Bioinformatics Pipelines
inferred← citeshttps://doi.org/10.1109/southeastcon42311.2019.9020286openalex-snapshot
A Web-App for Analysis of Honey Bee Hive Data
inferred← citeshttps://doi.org/10.1109/tnb.2018.2837122openalex-snapshot
Managing Complex Workflows in Bioinformatics: An Interactive Toolkit With GPU Acceleration
inferred← citeshttps://doi.org/10.1111/tpj.14157openalex-snapshot
Sunflower resistance to multiple downy mildew pathotypes revealed by recognition of conserved effectors of the oomycete Plasmopara halstedii
inferred← citeshttps://doi.org/10.1145/3107411.3107481openalex-snapshot
Building Applications for Interactive Data Exploration in Systems Biology
inferred← citeshttps://doi.org/10.1155/2015/904541openalex-snapshot
Trends in IT Innovation to Build a Next Generation Bioinformatics Solution to Manage and Analyse Biological Big Data Produced by NGS Technologies
inferred← citeshttps://doi.org/10.1161/circresaha.115.306013openalex-snapshot
Harnessing the Heart of Big Data
inferred← citeshttps://doi.org/10.1177/1460458219869490openalex-snapshot
Recognizing software names in biomedical literature using machine learning
inferred← citeshttps://doi.org/10.1186/1471-2105-15-129openalex-snapshot
A web-based protein interaction network visualizer
inferred← citeshttps://doi.org/10.1186/1471-2105-15-176openalex-snapshot
QMachine: commodity supercomputing in web browsers
inferred← citeshttps://doi.org/10.1186/1471-2105-16-s11-s2openalex-snapshot
VisRseq: R-based visual framework for analysis of sequencing data
inferred← citeshttps://doi.org/10.1186/1753-6561-8-s2-s9openalex-snapshot
Sequence Diversity Diagram for comparative analysis of multiple sequence alignments
inferred← citeshttps://doi.org/10.1186/2041-1480-4-s1-s5openalex-snapshot
Biotea: RDFizing PubMed Central in support for the paper as an interface to the Web of Data
inferred← citeshttps://doi.org/10.1186/s12870-017-1039-xopenalex-snapshot
CottonFGD: an integrated functional genomics database for cotton
inferred← citeshttps://doi.org/10.1186/s13104-015-1009-zopenalex-snapshot
Mason: a JavaScript web site widget for visualizing and comparing annotated features in nucleotide or protein sequences
inferred← citeshttps://doi.org/10.1186/s13321-014-0044-4openalex-snapshot
InCHlib – interactive cluster heatmap for web applications
inferred← citeshttps://doi.org/10.1186/s13326-016-0072-2openalex-snapshot
PhenoImageShare: an image annotation and query infrastructure
inferred← citeshttps://doi.org/10.1186/s40709-015-0032-5openalex-snapshot
Data integration in biological research: an overview
inferred← citeshttps://doi.org/10.12688/f1000research.11407.1openalex-snapshot
Four simple recommendations to encourage best practices in research software
inferred← citeshttps://doi.org/10.12688/f1000research.15433.1openalex-snapshot
Epiviz Web Components: reusable and extensible component library to visualize functional genomic datasets
inferred← citeshttps://doi.org/10.12688/f1000research.16605.1openalex-snapshot
KnetMaps: a BioJS component to visualize biological knowledge networks
inferred← citeshttps://doi.org/10.12688/f1000research.3-43.v1openalex-snapshot
KEGGViewer, a BioJS component to visualize KEGG Pathways
inferred← citeshttps://doi.org/10.12688/f1000research.3-44.v1openalex-snapshot
PsicquicGraph, a BioJS component to visualize molecular interactions from PSICQUIC servers
inferred← citeshttps://doi.org/10.12688/f1000research.3-45.v1openalex-snapshot
BioJS InterMine List Analysis: A BioJS component for displaying graphical or statistical analysis of collections of items from InterMine endpoints
inferred← citeshttps://doi.org/10.12688/f1000research.3-46.v1openalex-snapshot
BioJS InterMineTable Component: A BioJS component for displaying data from InterMine compatible webservice endpoints
inferred← citeshttps://doi.org/10.12688/f1000research.3-47.v1openalex-snapshot
FeatureViewer, a BioJS component for visualization of position-based annotations in protein sequences
inferred← citeshttps://doi.org/10.12688/f1000research.3-48.v1openalex-snapshot
HeatMapViewer: interactive display of 2D data in biology
inferred← citeshttps://doi.org/10.12688/f1000research.3-49.v1openalex-snapshot
treeWidget: a BioJS component to visualise phylogenetic trees
inferred← citeshttps://doi.org/10.12688/f1000research.3-50.v1openalex-snapshot
PPI layouts: BioJS components for the display of Protein-Protein Interactions
inferred← citeshttps://doi.org/10.12688/f1000research.3-51.v1openalex-snapshot
BioJS DAGViewer: A reusable JavaScript component for displaying directed graphs
inferred← citeshttps://doi.org/10.12688/f1000research.3-52.v1openalex-snapshot
Sequence, a BioJS component for visualising sequences
inferred← citeshttps://doi.org/10.12688/f1000research.3-53.v1openalex-snapshot
wigExplorer, a BioJS component to visualise wig data
inferred← citeshttps://doi.org/10.12688/f1000research.3-53.v2openalex-snapshot
wigExplorer, a BioJS component to visualise wig data
inferred← citeshttps://doi.org/10.12688/f1000research.3-53.v3openalex-snapshot
wigExplorer, a BioJS component to visualise wig data
inferred← citeshttps://doi.org/10.12688/f1000research.3-54.v1openalex-snapshot
DNAContentViewer a BioJS component to visualise GC/AT Content
inferred← citeshttps://doi.org/10.12688/f1000research.7620.1openalex-snapshot
BioTapestry now provides a web application and improved drawing and layout tools
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1003972openalex-snapshot
A Quick Guide for Building a Successful Bioinformatics Community
inferred← citeshttps://doi.org/10.1371/journal.pone.0175480openalex-snapshot
phylo-node: A molecular phylogenetic toolkit using Node.js
inferred← citeshttps://doi.org/10.1371/journal.pone.0205286openalex-snapshot
BlasterJS: A novel interactive JavaScript visualisation component for BLAST alignment results
inferred← citeshttps://doi.org/10.1371/journal.pone.0211043openalex-snapshot
Repository of Enriched Structures of Proteins Involved in the Red Blood Cell Environment (RESPIRE)
inferred← citeshttps://doi.org/10.14264/uql.2016.290openalex-snapshot
Molecular interaction motifs in a system-wide network context: Computationally charting transient kinase-substrate phosphorylation events
inferred← citeshttps://doi.org/10.18026/cbayarsos.584804openalex-snapshot
Veri Görselleştirmenin Bilgi Sistemlerinde Kullanımı: Web Tabanlı Mezun Bilgi Sistemi Örneği
inferred← citeshttps://doi.org/10.18174/505685openalex-snapshot
Genomics data integration for knowledge discovery using genome annotations from molecular databases and scientific literature
inferred← citeshttps://doi.org/10.21105/joss.05603openalex-snapshot
Powering single-cell analyses in the browser with WebAssembly
inferred← citeshttps://doi.org/10.2147/aabc.s63534openalex-snapshot
Tools for visualization and analysis of molecular networks, pathways, and -omics data
inferred← citeshttps://doi.org/10.3389/fgene.2020.00292openalex-snapshot
FluentDNA: Nucleotide Visualization of Whole Genomes, Annotations, and Alignments
inferred← citeshttps://doi.org/10.3390/informatics4030028openalex-snapshot
Web Apps Come of Age for Molecular Sciences
inferred← citeshttps://doi.org/10.4018/ijmstr.2016040103openalex-snapshot
Analyzing and Visualizing Genomic Complexity for the Derivation of the Emergent Molecular Networks
inferred← citeshttps://doi.org/10.5220/0007571101060117openalex-snapshot
Lightweight Coordination of Multiple Independent Visual Analytics Tools
inferred← citeshttps://doi.org/10.5281/zenodo.33715openalex-snapshot
Efforts towards accessible and reliable bioinformatics
inferred← citeshttps://doi.org/10.7554/elife.07009openalex-snapshot
Anatomy of BioJS, an open source community for the life sciences
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