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Improved long read correction for de novo assembly using an FM-index

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-3-642-21458-5_20openalex-snapshot

Lightweight BWT Construction for Very Large String Collections

inferredcites →https://doi.org/10.1038/nbt.2280openalex-snapshot

Hybrid error correction and de novo assembly of single-molecule sequencing reads

inferredcites →https://doi.org/10.1038/nbt.3238openalex-snapshot

Assembling large genomes with single-molecule sequencing and locality-sensitive hashing

inferredcites →https://doi.org/10.1038/nmeth.2474openalex-snapshot

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

inferredcites →https://doi.org/10.1038/nmeth.3444openalex-snapshot

A complete bacterial genome assembled de novo using only nanopore sequencing data

inferredcites →https://doi.org/10.1038/nrg3117openalex-snapshot

Repetitive DNA and next-generation sequencing: computational challenges and solutions

inferredcites →https://doi.org/10.1038/srep31900openalex-snapshot

DBG2OLC: Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies

inferredcites →https://doi.org/10.1093/bioinformatics/btt086openalex-snapshot

QUAST: quality assessment tool for genome assemblies

inferredcites →https://doi.org/10.1093/bioinformatics/btu538openalex-snapshot

LoRDEC: accurate and efficient long read error correction

inferredcites →https://doi.org/10.1093/bioinformatics/btu541openalex-snapshot

Fast construction of FM-index for long sequence reads

inferredcites →https://doi.org/10.1093/bioinformatics/btu584openalex-snapshot

Merging of multi-string BWTs with applications

inferredcites →https://doi.org/10.1093/bioinformatics/btv688openalex-snapshot

hybrid SPA des : an algorithm for hybrid assembly of short and long reads

inferredcites →https://doi.org/10.1093/bioinformatics/btw152openalex-snapshot

Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences

inferredcites →https://doi.org/10.1101/006395openalex-snapshot

Error correction and assembly complexity of single molecule sequencing reads

inferredcites →https://doi.org/10.1109/bibm.2015.7359662openalex-snapshot

Short read error correction using an FM-index

inferredcites →https://doi.org/10.1186/1471-2105-13-238openalex-snapshot

Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory

inferredcites →https://doi.org/10.1186/1471-2164-15-349openalex-snapshot

A network-based approach to identify substrate classes of bacterial glycosyltransferases

inferredcites →https://doi.org/10.1186/1471-2164-15-699openalex-snapshot

Performance comparison of second- and third-generation sequencers using a bacterial genome with two chromosomes

inferredcites →https://doi.org/10.1371/journal.pone.0046679openalex-snapshot

Improving PacBio Long Read Accuracy by Short Read Alignment

inferredcites →https://doi.org/10.48550/arxiv.1307.7933openalex-snapshot

Cerulean: A hybrid assembly using high throughput short and long reads

inferredcites →https://doi.org/10.5555/365411.365458openalex-snapshot

An experimental study of an opportunistic index

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1109/tcbb.2017.2737999openalex-snapshot

FastEtch: A Fast Sketch-Based Assembler for Genomes

inferred← citeshttps://doi.org/10.1111/1755-0998.13176openalex-snapshot

Chromosome‐level hybrid de novo genome assemblies as an attainable option for nonmodel insects

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.