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Local genetic effects on gene expression across 44 human tissues

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Random-Effects Model Aimed at Discovering Associations in Meta-Analysis of Genome-wide Association Studies

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An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants

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Colocalization of GWAS and eQTL Signals Detects Target Genes

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From genome to function by studying eQTLs

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Applying genetics in inflammatory disease drug discovery

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Molecular mechanisms underlying variations in lung function: a systems genetics analysis

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ACMG recommendations for reporting of incidental findings in clinical exome and genome sequencing

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9p21 DNA variants associated with coronary artery disease impair interferon-γ signalling response

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An integrated map of genetic variation from 1,092 human genomes

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Transcriptome and genome sequencing uncovers functional variation in humans

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Genetic and epigenetic fine mapping of causal autoimmune disease variants

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Integrative analysis of 111 reference human epigenomes

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Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data

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Bayesian integration of genetics and epigenetics detects causal regulatory SNPs underlying expression variability

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Genome-wide association study in Han Chinese identifies four new susceptibility loci for coronary artery disease

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Large-scale association analysis identifies new risk loci for coronary artery disease

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Genome-wide meta-analysis identifies new susceptibility loci for migraine

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Heritability and genomics of gene expression in peripheral blood

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Common variation in PHACTR1 is associated with susceptibility to cervical artery dissection

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Gene-gene and gene-environment interactions detected by transcriptome sequence analysis in twins

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Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants

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A gene-based association method for mapping traits using reference transcriptome data

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Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets

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Identification of context-dependent expression quantitative trait loci in whole blood

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Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease

inferredcites →https://doi.org/10.1038/nprot.2011.457openalex-snapshot

Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses

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From expression QTLs to personalized transcriptomics

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The role of regulatory variation in complex traits and disease

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FTO Obesity Variant Circuitry and Adipocyte Browning in Humans

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Statistical significance for genomewide studies

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A Novel Approach to High-Quality Postmortem Tissue Procurement: The GTEx Project

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TopHat: discovering splice junctions with RNA-Seq

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Fast and efficient QTL mapper for thousands of molecular phenotypes

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TreeQTL: hierarchical error control for eQTL findings

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An Improved Bonferroni Procedure for Multiple Tests of Significance

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Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders

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Transcription factor and chromatin features predict genes associated with eQTLs

inferredcites →https://doi.org/10.1093/nar/gkt1229openalex-snapshot

The NHGRI GWAS Catalog, a curated resource of SNP-trait associations

inferredcites →https://doi.org/10.1093/nar/gkv1222openalex-snapshot

ClinVar: public archive of interpretations of clinically relevant variants

inferredcites →https://doi.org/10.1101/gr.088120.108openalex-snapshot

High resolution mapping of expression QTLs in heterogeneous stock mice in multiple tissues

inferredcites →https://doi.org/10.1101/gr.135350.111openalex-snapshot

GENCODE: The reference human genome annotation for The ENCODE Project

inferredcites →https://doi.org/10.1101/gr.155192.113openalex-snapshot

Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals

inferredcites →https://doi.org/10.1111/biom.12810openalex-snapshot

Estimation of cis-eQTL Effect Sizes Using a Log of Linear Model

inferredcites →https://doi.org/10.1111/j.2517-6161.1995.tb02031.xopenalex-snapshot

Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing

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Selective Inference on Multiple Families of Hypotheses

inferredcites →https://doi.org/10.1126/science.1174148openalex-snapshot

Common Regulatory Variation Impacts Gene Expression in a Cell Type–Dependent Manner

inferredcites →https://doi.org/10.1126/science.1262110openalex-snapshot

The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans

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Myocardial Infarction–Associated SNP at 6p24 Interferes With MEF2 Binding and Associates With PHACTR1 Expression Levels in Human Coronary Arteries

inferredcites →https://doi.org/10.1186/s13059-014-0467-2openalex-snapshot

Allelic mapping bias in RNA-sequencing is not a major confounder in eQTL studies

inferredcites →https://doi.org/10.1186/s13059-015-0762-6openalex-snapshot

Tools and best practices for data processing in allelic expression analysis

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Expression quantitative trait locus analysis for translational medicine

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Molecular QTL discovery incorporating genomic annotations using Bayesian false discovery rate control

inferredcites →https://doi.org/10.1371/journal.pgen.1000895openalex-snapshot

Candidate Causal Regulatory Effects by Integration of Expression QTLs with Complex Trait Genetic Associations

inferredcites →https://doi.org/10.1371/journal.pgen.1002003openalex-snapshot

The Architecture of Gene Regulatory Variation across Multiple Human Tissues: The MuTHER Study

inferredcites →https://doi.org/10.1371/journal.pgen.1002555openalex-snapshot

Interpreting Meta-Analyses of Genome-Wide Association Studies

inferredcites →https://doi.org/10.1371/journal.pgen.1003486openalex-snapshot

A Statistical Framework for Joint eQTL Analysis in Multiple Tissues

inferredcites →https://doi.org/10.1371/journal.pgen.1003491openalex-snapshot

Effectively Identifying eQTLs from Multiple Tissues by Combining Mixed Model and Meta-analytic Approaches

inferredcites →https://doi.org/10.1371/journal.pgen.1003649openalex-snapshot

Integrative Modeling of eQTLs and Cis-Regulatory Elements Suggests Mechanisms Underlying Cell Type Specificity of eQTLs

inferredcites →https://doi.org/10.1371/journal.pgen.1004234openalex-snapshot

A General Approach for Haplotype Phasing across the Full Spectrum of Relatedness

inferredcites →https://doi.org/10.1371/journal.pgen.1004383openalex-snapshot

Bayesian Test for Colocalisation between Pairs of Genetic Association Studies Using Summary Statistics

inferredcites →https://doi.org/10.1534/g3.111.001198openalex-snapshot

Genotype Imputation with Thousands of Genomes

inferredcites →https://doi.org/10.1534/genetics.114.167908openalex-snapshot

Identifying Causal Variants at Loci with Multiple Signals of Association

inferredcites →https://doi.org/10.17615/6rbf-cv28openalex-snapshot

An empirical Bayes approach for multiple tissue eQTL analysis

inferredcites →https://doi.org/10.48550/arxiv.1605.08799openalex-snapshot

Estimation of Interpretable eQTL Effect Sizes Using a Log of Linear Model

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Predicting gene expression in massively parallel reporter assays: A comparative study

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Characterizing the Relation Between Expression QTLs and Complex Traits: Exploring the Role of Tissue Specificity

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Tissue Specificity of Gene Expression

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Genetic-Variation-Driven Gene-Expression Changes Highlight Genes with Important Functions for Kidney Disease

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A Genetic Variant Associated with Five Vascular Diseases Is a Distal Regulator of Endothelin-1 Gene Expression

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Global variation in gene expression and the value of diverse sampling

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Data resources for human functional genomics

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Large, Diverse Population Cohorts of hiPSCs and Derived Hepatocyte-like Cells Reveal Functional Genetic Variation at Blood Lipid-Associated Loci

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Implicating candidate genes at GWAS signals by leveraging topologically associating domains

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A complete tool set for molecular QTL discovery and analysis

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Genetic analysis in UK Biobank links insulin resistance and transendothelial migration pathways to coronary artery disease

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Brains, genes and power

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Genetic regulatory effects modified by immune activation contribute to autoimmune disease associations

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An integrative cross-omics analysis of DNA methylation sites of glucose and insulin homeostasis

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Systems genetics in diversity outbred mice inform BMD GWAS and identify determinants of bone strength

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Leveraging molecular quantitative trait loci to understand the genetic architecture of diseases and complex traits

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Deep learning sequence-based ab initio prediction of variant effects on expression and disease risk

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A mega-analysis of expression quantitative trait loci (eQTL) provides insight into the regulatory architecture of gene expression variation in liver

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Co-expression networks reveal the tissue-specific regulation of transcription and splicing

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Implicating candidate genes at GWAS signals by leveraging topologically associating domains

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Polygenic selection underlies evolution of human brain structure and behavioral traits

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Genome-Wide Association Study of Body Fat Distribution identifies Novel Adiposity Loci and Sex-Specific Genetic Effects

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Cell-type specific eQTL of primary melanocytes facilitates identification of melanoma susceptibility genes

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