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Cell-type specific eQTL of primary melanocytes facilitates identification of melanoma susceptibility genes
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1001/jamadermatol.2018.1252openalex-snapshot
Contributions byMC1RVariants to Melanoma Risk in Males and Females
inferredcites →https://doi.org/10.1002/eji.201344279openalex-snapshot
IRF4 at the crossroads of effector T‐cell fate decision
inferredcites →https://doi.org/10.1007/s00439-015-1559-0openalex-snapshot
Genetics of skin color variation in Europeans: genome-wide association studies with functional follow-up
inferredcites →https://doi.org/10.1016/j.abb.2014.07.023openalex-snapshot
Developmental pathways activated in melanocytes and melanoma
inferredcites →https://doi.org/10.1016/j.ajhg.2012.09.004openalex-snapshot
Detecting and Estimating Contamination of Human DNA Samples in Sequencing and Array-Based Genotype Data
inferredcites →https://doi.org/10.1016/j.ajhg.2016.07.007openalex-snapshot
Complex Sources of Variation in Tissue Expression Data: Analysis of the GTEx Lung Transcriptome
inferredcites →https://doi.org/10.1016/j.ajhg.2016.10.003openalex-snapshot
Colocalization of GWAS and eQTL Signals Detects Target Genes
inferredcites →https://doi.org/10.1016/j.bbadis.2014.04.024openalex-snapshot
From genome to function by studying eQTLs
inferredcites →https://doi.org/10.1016/j.cell.2013.10.022openalex-snapshot
A Polymorphism in IRF4 Affects Human Pigmentation through a Tyrosinase-Dependent MITF/TFAP2A Pathway
inferredcites →https://doi.org/10.1016/j.chom.2016.08.005openalex-snapshot
Identification of Interferon-Stimulated Genes with Antiretroviral Activity
inferredcites →https://doi.org/10.1038/jid.2009.258openalex-snapshot
Multiple Pigmentation Gene Polymorphisms Account for a Substantial Proportion of Risk of Cutaneous Malignant Melanoma
inferredcites →https://doi.org/10.1038/jid.2009.62openalex-snapshot
Genome-Wide Association Study of Tanning Phenotype in a Population of European Ancestry
inferredcites →https://doi.org/10.1038/jid.2014.65openalex-snapshot
Melanocytes as Instigators and Victims of Oxidative Stress
inferredcites →https://doi.org/10.1038/jid.2015.62openalex-snapshot
A Genome-Wide Association Study Identifies the Skin Color Genes IRF4, MC1R, ASIP, and BNC2 Influencing Facial Pigmented Spots
inferredcites →https://doi.org/10.1038/nature08872openalex-snapshot
Understanding mechanisms underlying human gene expression variation with RNA sequencing
inferredcites →https://doi.org/10.1038/nature11247openalex-snapshot
An integrated encyclopedia of DNA elements in the human genome
inferredcites →https://doi.org/10.1038/nature12531openalex-snapshot
Transcriptome and genome sequencing uncovers functional variation in humans
inferredcites →https://doi.org/10.1038/nature13602openalex-snapshot
Putative cis-regulatory drivers in colorectal cancer
inferredcites →https://doi.org/10.1038/nature14248openalex-snapshot
Integrative analysis of 111 reference human epigenomes
inferredcites →https://doi.org/10.1038/nature15393openalex-snapshot
A global reference for human genetic variation
inferredcites →https://doi.org/10.1038/nature22403openalex-snapshot
Common genetic variation drives molecular heterogeneity in human iPSCs
inferredcites →https://doi.org/10.1038/nature24277openalex-snapshot
Genetic effects on gene expression across human tissues
inferredcites →https://doi.org/10.1038/ncomms11795openalex-snapshot
GPRC5A suppresses protein synthesis at the endoplasmic reticulum to prevent radiation-induced lung tumorigenesis
inferredcites →https://doi.org/10.1038/ncomms4365openalex-snapshot
Characterizing the genetic basis of methylome diversity in histologically normal human lung tissue
inferredcites →https://doi.org/10.1038/ng.160openalex-snapshot
Two newly identified genetic determinants of pigmentation in Europeans
inferredcites →https://doi.org/10.1038/ng.161openalex-snapshot
ASIP and TYR pigmentation variants associate with cutaneous melanoma and basal cell carcinoma
inferredcites →https://doi.org/10.1038/ng.163openalex-snapshot
Common sequence variants on 20q11.22 confer melanoma susceptibility
inferredcites →https://doi.org/10.1038/ng.2007.13openalex-snapshot
Genetic determinants of hair, eye and skin pigmentation in Europeans
inferredcites →https://doi.org/10.1038/ng.2205openalex-snapshot
Genetics of gene expression in primary immune cells identifies cell type–specific master regulators and roles of HLA alleles
inferredcites →https://doi.org/10.1038/ng.2653openalex-snapshot
The Genotype-Tissue Expression (GTEx) project
inferredcites →https://doi.org/10.1038/ng.2756openalex-snapshot
Systematic identification of trans eQTLs as putative drivers of known disease associations
inferredcites →https://doi.org/10.1038/ng.3052openalex-snapshot
Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer
inferredcites →https://doi.org/10.1038/ng.3162openalex-snapshot
Gene-gene and gene-environment interactions detected by transcriptome sequence analysis in twins
inferredcites →https://doi.org/10.1038/ng.3367openalex-snapshot
A gene-based association method for mapping traits using reference transcriptome data
inferredcites →https://doi.org/10.1038/ng.3373openalex-snapshot
Genome-wide meta-analysis identifies five new susceptibility loci for cutaneous malignant melanoma
inferredcites →https://doi.org/10.1038/ng.3404openalex-snapshot
Partitioning heritability by functional annotation using genome-wide association summary statistics
inferredcites →https://doi.org/10.1038/ng.3506openalex-snapshot
Integrative approaches for large-scale transcriptome-wide association studies
inferredcites →https://doi.org/10.1038/ng.3538openalex-snapshot
Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets
inferredcites →https://doi.org/10.1038/ng.3603openalex-snapshot
Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus
inferredcites →https://doi.org/10.1038/ng.3656openalex-snapshot
Next-generation genotype imputation service and methods
inferredcites →https://doi.org/10.1038/ng.3927openalex-snapshot
A common intronic variant of PARP1 confers melanoma risk and mediates melanocyte growth via regulation of MITF
inferredcites →https://doi.org/10.1038/ng.410openalex-snapshot
Genome-wide association study identifies variants at 9p21 and 22q13 associated with development of cutaneous nevi
inferredcites →https://doi.org/10.1038/ng.411openalex-snapshot
Genome-wide association study identifies three loci associated with melanoma risk
inferredcites →https://doi.org/10.1038/ng.958openalex-snapshot
Genome-wide association study identifies a new melanoma susceptibility locus at 1q21.3
inferredcites →https://doi.org/10.1038/ng.959openalex-snapshot
Genome-wide association study identifies three new melanoma susceptibility loci
inferredcites →https://doi.org/10.1038/ng1589openalex-snapshot
An integrative genomics approach to infer causal associations between gene expression and disease
inferredcites →https://doi.org/10.1038/ng1847openalex-snapshot
Principal components analysis corrects for stratification in genome-wide association studies
inferredcites →https://doi.org/10.1038/ng1987openalex-snapshot
A module of negative feedback regulators defines growth factor signaling
inferredcites →https://doi.org/10.1038/ng2142openalex-snapshot
Population genomics of human gene expression
inferredcites →https://doi.org/10.1038/ni.3667openalex-snapshot
The transcription factor musculin promotes the unidirectional development of peripheral Treg cells by suppressing the TH2 transcriptional program
inferredcites →https://doi.org/10.1038/nn.4182openalex-snapshot
Methylation QTLs in the developing brain and their enrichment in schizophrenia risk loci
inferredcites →https://doi.org/10.1038/s41467-017-00366-1openalex-snapshot
Genetic regulatory effects modified by immune activation contribute to autoimmune disease associations
inferredcites →https://doi.org/10.1038/s41467-018-04086-yopenalex-snapshot
Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure
inferredcites →https://doi.org/10.1038/s41588-018-0081-4openalex-snapshot
Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types
inferredcites →https://doi.org/10.1038/s41588-018-0100-5openalex-snapshot
Genome-wide association meta-analysis of individuals of European ancestry identifies new loci explaining a substantial fraction of hair color variation and heritability
inferredcites →https://doi.org/10.1073/pnas.1530509100openalex-snapshot
Statistical significance for genomewide studies
inferredcites →https://doi.org/10.1073/pnas.94.16.8658openalex-snapshot
Xeroderma pigmentosum and trichothiodystrophy are associated with different mutations in the XPD ( ERCC 2) repair/transcription gene
inferredcites →https://doi.org/10.1073/pnas.96.2.552openalex-snapshot
MyoR: A muscle-restricted basic helix–loop–helix transcription factor that antagonizes the actions of MyoD
inferredcites →https://doi.org/10.1084/jem.191.6.1005openalex-snapshot
Deregulated E2f Transcriptional Activity in Autonomously Growing Melanoma Cells
inferredcites →https://doi.org/10.1086/522235openalex-snapshot
A Genomewide Association Study of Skin Pigmentation in a South Asian Population
inferredcites →https://doi.org/10.1093/bioinformatics/bts163openalex-snapshot
Matrix eQTL: ultra fast eQTL analysis via large matrix operations
inferredcites →https://doi.org/10.1093/bioinformatics/bts196openalex-snapshot
RNA-SeQC: RNA-seq metrics for quality control and process optimization
inferredcites →https://doi.org/10.1093/bioinformatics/bts356openalex-snapshot
RSeQC: quality control of RNA-seq experiments
inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot
STAR: ultrafast universal RNA-seq aligner
inferredcites →https://doi.org/10.1093/bioinformatics/btv722openalex-snapshot
Fast and efficient QTL mapper for thousands of molecular phenotypes
inferredcites →https://doi.org/10.1093/hmg/ddm177openalex-snapshot
Receptor function, dominant negative activity and phenotype correlations for MC1R variant alleles
inferredcites →https://doi.org/10.1093/hmg/ddr154openalex-snapshot
Genome-wide association study identifies nidogen 1 ( NID1 ) as a susceptibility locus to cutaneous nevi and melanoma risk
inferredcites →https://doi.org/10.1093/hmg/ddr415openalex-snapshot
Genome-wide association study identifies novel loci predisposing to cutaneous melanoma†
inferredcites →https://doi.org/10.1093/hmg/ddt142openalex-snapshot
Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans
inferredcites →https://doi.org/10.1096/fj.06-6649revopenalex-snapshot
Human skin pigmentation: melanocytes modulate skin color in response to stress
inferredcites →https://doi.org/10.1096/fj.12-209460openalex-snapshot
The GTPase Gem and its partner Kif9 are required for chromosome alignment, spindle length control, and mitotic progression
inferredcites →https://doi.org/10.1097/01.sla.0000216771.81362.6bopenalex-snapshot
Gender-Related Differences in Outcome for Melanoma Patients
inferredcites →https://doi.org/10.1101/074450openalex-snapshot
Local genetic effects on gene expression across 44 human tissues
inferredcites →https://doi.org/10.1101/gr.216754.116openalex-snapshot
Identifying cis -mediators for trans -eQTLs across many human tissues using genomic mediation analysis
inferredcites →https://doi.org/10.1111/1523-1747.ep12292572openalex-snapshot
Agouti Signaling Protein Inhibits Melanogenesis and the Response of Human Melanocytes to α-Melanotropin
inferredcites →https://doi.org/10.1111/j.2517-6161.1995.tb02031.xopenalex-snapshot
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
inferredcites →https://doi.org/10.1126/science.1174148openalex-snapshot
Common Regulatory Variation Impacts Gene Expression in a Cell Type–Dependent Manner
inferredcites →https://doi.org/10.1126/science.1262110openalex-snapshot
The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans
inferredcites →https://doi.org/10.1126/scisignal.2004088openalex-snapshot
Integrative Analysis of Complex Cancer Genomics and Clinical Profiles Using the cBioPortal
inferredcites →https://doi.org/10.1128/mcb.25.18.8044-8051.2005openalex-snapshot
Genetic Evidence that Small Maf Proteins Are Essential for the Activation of Antioxidant Response Element-Dependent Genes
inferredcites →https://doi.org/10.1136/gutjnl-2016-313146openalex-snapshot
Characterising cis -regulatory variation in the transcriptome of histologically normal and tumour-derived pancreatic tissues
inferredcites →https://doi.org/10.1152/physiol.00043.2011openalex-snapshot
Mechanisms of Protein Delivery to Melanosomes in Pigment Cells
inferredcites →https://doi.org/10.1158/0008-5472.can-16-1181openalex-snapshot
Loss of the Methyl-CpG–Binding Protein ZBTB4 Alters Mitotic Checkpoint, Increases Aneuploidy, and Promotes Tumorigenesis
inferredcites →https://doi.org/10.1158/2159-8290.cd-12-0095openalex-snapshot
The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data
inferredcites →https://doi.org/10.1186/1471-2105-12-323openalex-snapshot
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
inferredcites →https://doi.org/10.1186/gb-2008-9-9-r137openalex-snapshot
Model-based Analysis of ChIP-Seq (MACS)
inferredcites →https://doi.org/10.1186/gb-2011-12-4-r41openalex-snapshot
GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers
inferredcites →https://doi.org/10.1186/s12864-015-2356-9openalex-snapshot
QuickRNASeq lifts large-scale RNA-seq data analyses to the next level of automation and interactive visualization
inferredcites →https://doi.org/10.1186/s13059-015-0762-6openalex-snapshot
Tools and best practices for data processing in allelic expression analysis
inferredcites →https://doi.org/10.1186/s13578-016-0134-2openalex-snapshot
Maintenance of genome stability by Fanconi anemia proteins
inferredcites →https://doi.org/10.1371/journal.pcbi.1000770openalex-snapshot
A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies
inferredcites →https://doi.org/10.1371/journal.pgen.1000074openalex-snapshot
A Genome-Wide Association Study Identifies Novel Alleles Associated with Hair Color and Skin Pigmentation
inferredcites →https://doi.org/10.1371/journal.pgen.1000888openalex-snapshot
Trait-Associated SNPs Are More Likely to Be eQTLs: Annotation to Enhance Discovery from GWAS
inferredcites →https://doi.org/10.1371/journal.pgen.1000993openalex-snapshot
Web-Based, Participant-Driven Studies Yield Novel Genetic Associations for Common Traits
inferredcites →https://doi.org/10.1371/journal.pgen.1002003openalex-snapshot
The Architecture of Gene Regulatory Variation across Multiple Human Tissues: The MuTHER Study
inferredcites →https://doi.org/10.1371/journal.pone.0048294openalex-snapshot
Genome-Wide Association Studies of Quantitatively Measured Skin, Hair, and Eye Pigmentation in Four European Populations
inferredcites →https://doi.org/10.18632/oncotarget.2801openalex-snapshot
CD147 promotes Src-dependent activation of Rac1 signaling through STAT3/DOCK8 during the motility of hepatocellular carcinoma cells
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.3389/fendo.2013.00009openalex-snapshot
The melanocortin receptors and their accessory proteins
inferredcites →https://doi.org/10.3389/fgene.2016.00095openalex-snapshot
Melanocortin 1 Receptor: Structure, Function, and Regulation
inferredcites →https://doi.org/10.4049/jimmunol.1003545openalex-snapshot
Processing of HEBP1 by Cathepsin D Gives Rise to F2L, the Agonist of Formyl Peptide Receptor 3
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1038/s41467-020-16590-1openalex-snapshot
Massively parallel reporter assays of melanoma risk variants identify MX2 as a gene promoting melanoma
inferred← citeshttps://doi.org/10.1038/s41588-020-0611-8openalex-snapshot
Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility
inferred← citeshttps://doi.org/10.1038/s41588-022-01115-xopenalex-snapshot
Cross-ancestry genome-wide meta-analysis of 61,047 cases and 947,237 controls identifies new susceptibility loci contributing to lung cancer
inferred← citeshttps://doi.org/10.1038/s42003-021-02764-0openalex-snapshot
A large Canadian cohort provides insights into the genetic architecture of human hair colour
inferred← citeshttps://doi.org/10.1093/gbe/evab237openalex-snapshot
Tracing the Evolution of Human Gene Regulation and Its Association with Shifts in Environment
inferred← citeshttps://doi.org/10.1111/jnc.16276openalex-snapshot
Identification of Alzheimer's disease susceptibility genes by integrating eight human brain single‐cell transcriptomes with genome‐wide association studies
inferred← citeshttps://doi.org/10.1371/journal.pgen.1007875openalex-snapshot
Gene expression variation and parental allele inheritance in a Xiphophorus interspecies hybridization model
inferred← citeshttps://doi.org/10.5204/thesis.eprints.248736openalex-snapshot
Identification of multi-cancer risk genes
inferred← citeshttps://doi.org/10.7150/jca.43010openalex-snapshot
A Functional Synonymous Variant in PDGFRA Is Associated with Better Survival in Acral Melanoma
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