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Inferring the role of habitat dynamics in driving diversification: evidence for a species pump in Lake Tanganyika cichlids

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Evolution of NADH Dehydrogenase Subunit 2 in East African Cichlid Fish

inferredcites →https://doi.org/10.1007/s00239-004-0017-8openalex-snapshot

Evolutionary Relationships of the Limnochromini, a Tribe of Benthic Deepwater Cichlid Fish Endemic to Lake Tanganyika, East Africa

inferredcites →https://doi.org/10.1007/s00239-004-0217-2openalex-snapshot

Comparative Phylogenetic Analyses of the Adaptive Radiation of Lake Tanganyika Cichlid Fish: Nuclear Sequences Are Less Homoplasious But Also Less Informative Than Mitochondrial DNA

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A comparative test of phylogenetic diversity indices

inferredcites →https://doi.org/10.1007/s10750-016-2839-yopenalex-snapshot

Lake level fluctuations and divergence of cichlid fish ecomorphs in Lake Tanganyika

inferredcites →https://doi.org/10.1007/s10750-016-2896-2openalex-snapshot

Phylogeny and phylogeography of Altolamprologus: ancient introgression and recent divergence in a rock-dwelling Lake Tanganyika cichlid genus

inferredcites →https://doi.org/10.1007/s10914-005-4858-8openalex-snapshot

Effects of Quaternary Climatic Change on Speciation in Mammals

inferredcites →https://doi.org/10.1007/s10933-007-9187-xopenalex-snapshot

Seismic records of late Pleistocene aridity in Lake Tanganyika, tropical East Africa

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Convergent Evolution within an Adaptive Radiation of Cichlid Fishes

inferredcites →https://doi.org/10.1016/j.gene.2014.09.039openalex-snapshot

High prevalence of non-synonymous substitutions in mtDNA of cichlid fishes from Lake Victoria

inferredcites →https://doi.org/10.1016/j.ympev.2005.04.023openalex-snapshot

Phylogenetic relationships of the lamprologine cichlid genus Lepidiolamprologus (Teleostei: Perciformes) based on mitochondrial and nuclear sequences, suggesting introgressive hybridization

inferredcites →https://doi.org/10.1016/j.ympev.2007.02.025openalex-snapshot

Phylogenetic relationships of the Lake Tanganyika cichlid tribe Lamprologini: The story from mitochondrial DNA

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The role of repeated sea-level fluctuations in the generation of shrew (Soricidae: Crocidura) diversity in the Philippine Archipelago

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Phylogeny and biogeography of Philippine bent-toed geckos (Gekkonidae: Cyrtodactylus) contradict a prevailing model of Pleistocene diversification

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Species boundaries and cryptic lineage diversity in a Philippine forest skink complex (Reptilia; Squamata; Scincidae: Lygosominae)

inferredcites →https://doi.org/10.1016/j.ympev.2010.06.018openalex-snapshot

Evolutionary history of the Lake Tanganyika cichlid tribe Lamprologini (Teleostei: Perciformes) derived from mitochondrial and nuclear DNA data

inferredcites →https://doi.org/10.1016/j.ympev.2014.10.009openalex-snapshot

A tribal level phylogeny of Lake Tanganyika cichlid fishes based on a genomic multi-marker approach

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Lake-level history of Lake Tanganyika, East Africa, for the past 2500 years based on ostracode-inferred water-depth reconstruction

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Explosive speciation rates and unusual species richness in haplochromine cichlid fishes: Effects of sexual selection

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The Cichlid Fish Assemblages of Lake Tanganyika: Ecology, Behaviour and Evolution of its Species Flocks

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The Theory of Probability

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Ecological opportunity and sexual selection together predict adaptive radiation

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The genomic substrate for adaptive radiation in African cichlid fish

inferredcites →https://doi.org/10.1038/ncomms6149openalex-snapshot

The evolution of cichlid fish egg-spots is linked with a cis-regulatory change

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Speciation via introgressive hybridization in East African cichlids?

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New palaeogeographic and lake‐level reconstructions of Lake Tanganyika: implications for tectonic, climatic and biological evolution in a rift lake

inferredcites →https://doi.org/10.1046/j.1365-294x.2001.01200.xopenalex-snapshot

How many species of cichlid fishes are there in African lakes?

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Extreme microallopatric divergence in a cichlid species from Lake Malawi

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Effects of Landscape Disturbance on Animal Communities in Lake Tanganyika, East Africa

inferredcites →https://doi.org/10.1073/pnas.0703873104openalex-snapshot

Ecological consequences of early Late Pleistocene megadroughts in tropical Africa

inferredcites →https://doi.org/10.1073/pnas.1512864112openalex-snapshot

Continuous 1.3-million-year record of East African hydroclimate, and implications for patterns of evolution and biodiversity

inferredcites →https://doi.org/10.1073/pnas.1611028113openalex-snapshot

Environmental change explains cichlid adaptive radiation at Lake Malawi over the past 1.2 million years

inferredcites →https://doi.org/10.1093/bioinformatics/btg412openalex-snapshot

APE: Analyses of Phylogenetics and Evolution in R language

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AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics

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trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

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Simulation-based model selection for dynamical systems in systems and population biology

inferredcites →https://doi.org/10.1093/molbev/msi137openalex-snapshot

Adaptive Molecular Evolution in the Opsin Genes of Rapidly Speciating Cichlid Species

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Age of Cichlids: New Dates for Ancient Lake Fish Radiations

inferredcites →https://doi.org/10.1093/molbev/msp274openalex-snapshot

Bayesian Inference of Species Trees from Multilocus Data

inferredcites →https://doi.org/10.1093/molbev/msq171openalex-snapshot

Parallel Evolution of Opsin Gene Expression in African Cichlid Fishes

inferredcites →https://doi.org/10.1093/molbev/msq344openalex-snapshot

Reverse Evolution in RH1 for Adaptation of Cichlids to Water Depth in Lake Tanganyika

inferredcites →https://doi.org/10.1093/molbev/mss020openalex-snapshot

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

inferredcites →https://doi.org/10.1093/molbev/msw260openalex-snapshot

PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses

inferredcites →https://doi.org/10.1093/oso/9780198585251.001.0001openalex-snapshot

Lake Tanganyika and its Life

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003788openalex-snapshot

Lake Level Fluctuations Synchronize Genetic Divergences of Cichlid Fishes in African Lakes

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a004004openalex-snapshot

Natural Selection of the Rhodopsin Gene During the Adaptive Radiation of East African Great Lakes Cichlid Fishes

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a004144openalex-snapshot

What, if Anything, is a Tilapia?—Mitochondrial ND2 Phylogeny of Tilapiines and the Evolution of Parental Care Systems in the African Cichlid Fishes

inferredcites →https://doi.org/10.1093/sysbio/52.6.794openalex-snapshot

Phylogenetics of Fanged Frogs: Testing Biogeographical Hypotheses at the Interface of the Asian and Australian Faunal Zones

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The Shape and Temporal Dynamics of Phylogenetic Trees Arising from Geographic Speciation

inferredcites →https://doi.org/10.1093/sysbio/syr091openalex-snapshot

Prolonging the Past Counteracts the Pull of the Present: Protracted Speciation Can Explain Observed Slowdowns in Diversification

inferredcites →https://doi.org/10.1093/sysbio/syw069openalex-snapshot

Disentangling Incomplete Lineage Sorting and Introgression to Refine Species-Tree Estimates for Lake Tanganyika Cichlid Fishes

inferredcites →https://doi.org/10.1093/sysbio/syw076openalex-snapshot

Bayesian Phylogenetic Estimation of Clade Ages Supports Trans-Atlantic Dispersal of Cichlid Fishes

inferredcites →https://doi.org/10.1098/rsif.2008.0172openalex-snapshot

Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems

inferredcites →https://doi.org/10.1098/rspb.1999.0611openalex-snapshot

Population structure and colour variation of the cichlid fishes Labeotropheus fuelleborni Ahl along a recently formed archipelago of rocky habitat patches in southern Lake Malawi

inferredcites →https://doi.org/10.1098/rspb.2000.1278openalex-snapshot

Testing macro–evolutionary models using incomplete molecular phylogenies

inferredcites →https://doi.org/10.1098/rspb.2000.1580openalex-snapshot

Microsatellites reveal high levels of population substructuring in the species–poor Eretmodine cichlid lineage from Lake Tanganyika

inferredcites →https://doi.org/10.1098/rspb.2004.2819openalex-snapshot

Partial island submergence and speciation in an adaptive radiation: a multilocus analysis of the Cuban green anoles

inferredcites →https://doi.org/10.1098/rspb.2006.3539openalex-snapshot

African cichlid fish: a model system in adaptive radiation research

inferredcites →https://doi.org/10.1098/rspb.2011.1439openalex-snapshot

Diversity-dependence brings molecular phylogenies closer to agreement with the fossil record

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Extinction rates can be estimated from molecular phylogenies

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The reconstructed evolutionary process

inferredcites →https://doi.org/10.1098/rstb.1996.0074openalex-snapshot

Mitochondrial phylogeography of rock-dwelling cichlid fishes reveals evolutionary influence of historical lake level fluctuations of Lake Tanganyika, Africa

inferredcites →https://doi.org/10.1098/rstb.2008.0077openalex-snapshot

The relative importance of ecology and geographic isolation for speciation in anoles

inferredcites →https://doi.org/10.1101/012401openalex-snapshot

DensiTree 2: Seeing Trees Through the Forest

inferredcites →https://doi.org/10.1111/1755-0998.12523openalex-snapshot

Testing the potential of DNA barcoding in vertebrate radiations: the case of the littoral cichlids (Pisces, Perciformes, Cichlidae) from Lake Tanganyika

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phyloGenerator: an automated phylogeny generation tool for ecologists

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Approximate Bayesian Computation of diversification rates from molecular phylogenies: introducing a new efficient summary statistic, the nLTT

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Explaining Andean megadiversity: the evolutionary and ecological causes of glassfrog elevational richness patterns

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Cichlid species‐area relationships are shaped by adaptive radiations that scale with area

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Shifting barriers and phenotypic diversification by hybridisation

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ADAPTIVE RADIATION DRIVEN BY THE INTERPLAY OF ECO-EVOLUTIONARY AND LANDSCAPE DYNAMICS

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Genomic tests of the species-pump hypothesis: Recent island connectivity cycles drive population divergence but not speciation in Caribbean crickets across the Virgin Islands

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DIVERGENT TIMING AND PATTERNS OF SPECIES ACCUMULATION IN LOWLAND AND HIGHLAND NEOTROPICAL BIRDS

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Phylogeny and biogeography of cichlid fishes (Teleostei: Perciformes: Cichlidae)

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SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information

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New seismic stratigraphy and Late Tertiary history of the North Tanganyika Basin, East African Rift system, deduced from multichannel and high‐resolution reflection seismic data and piston core evidence

inferredcites →https://doi.org/10.1111/j.1365-2435.2009.01589.xopenalex-snapshot

Diet predicts intestine length in Lake Tanganyika’s cichlid fishes

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Are the Northern Andes a species pump for Neotropical birds? Phylogenetics and biogeography of a clade of Neotropical tanagers (Aves: Thraupini)

inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04348.xopenalex-snapshot

Complete mitochondrial DNA replacement in a Lake Tanganyika cichlid fish

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Establishment and expansion of Lake Malawi rock fish populations after a dramatic Late Pleistocene lake level rise

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Separated by sand, fused by dropping water: habitat barriers and fluctuating water levels steer the evolution of rock-dwelling cichlid populations in Lake Tanganyika

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Ecological speciation in dynamic landscapes

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Sexual selection and speciation: the comparative evidence revisited

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EVIDENCE FOR CLIMATE-DRIVEN DIVERSIFICATION? A CAUTION FOR INTERPRETING ABC INFERENCES OF SIMULTANEOUS HISTORICAL EVENTS

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Water‐level fluctuations and metapopulation dynamics as drivers of genetic diversity in populations of three Tanganyikan cichlid fish species

inferredcites →https://doi.org/10.1111/mec.13767openalex-snapshot

Genomics of speciation and introgression in Princess cichlid fishes from Lake Tanganyika

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Lake level and paleoenvironmental history of Lake Tanganyika, Africa, as inferred from late Holocene and modern stromatolites

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Estimating the age of formation of lakes: An example from Lake Tanganyika, East African Rift system

inferredcites →https://doi.org/10.1146/annurev-ecolsys-110411-160323openalex-snapshot

Evolutionary Processes of Diversification in a Model Island Archipelago

inferredcites →https://doi.org/10.11646/zootaxa.1638.1.3openalex-snapshot

The first case of aggressive mimicry among lamprologines in a new species of Lepidiolamprologus (Perciformes: Cichlidae) from Lake Tanganyika

inferredcites →https://doi.org/10.11646/zootaxa.3790.3.2openalex-snapshot

Chalinochromis cyanophleps, a new species of cichlid fish (Teleostei: Cichlidae) from Lake Tanganyika

inferredcites →https://doi.org/10.1186/1471-2148-7-7openalex-snapshot

Reticulate phylogeny of gastropod-shell-breeding cichlids from Lake Tanganyika – the result of repeated introgressive hybridization

inferredcites →https://doi.org/10.1186/1471-2148-9-186openalex-snapshot

The root of the East African cichlid radiations

inferredcites →https://doi.org/10.1371/journal.pcbi.1003537openalex-snapshot

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

inferredcites →https://doi.org/10.1371/journal.pcbi.1003963openalex-snapshot

Deep Neural Networks Rival the Representation of Primate IT Cortex for Core Visual Object Recognition

inferredcites →https://doi.org/10.1371/journal.pone.0018911openalex-snapshot

On the Origin and Trigger of the Notothenioid Adaptive Radiation

inferredcites →https://doi.org/10.1371/journal.pone.0125043openalex-snapshot

Lake Tanganyika—A 'Melting Pot' of Ancient and Young Cichlid Lineages (Teleostei: Cichlidae)?

inferredcites →https://doi.org/10.2307/2291091openalex-snapshot

Bayes Factors

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s10750-018-3686-9openalex-snapshot

Gondwanan vicariance or trans-Atlantic dispersal of cichlid fishes: a review of the molecular evidence

inferred← citeshttps://doi.org/10.1016/j.ympev.2024.108168openalex-snapshot

Phylogenetic tree statistics: A systematic overview using the new R package ‘treestats’

inferred← citeshttps://doi.org/10.1093/jhered/esab072openalex-snapshot

The Genetic Population Structure of Lake Tanganyika’s Lates Species Flock, an Endemic Radiation of Pelagic Top Predators

inferred← citeshttps://doi.org/10.1093/sysbio/syad044openalex-snapshot

Deep Learning from Phylogenies for Diversification Analyses

inferred← citeshttps://doi.org/10.1111/ele.13382openalex-snapshot

Assessing the causes of diversification slowdowns: temperature‐dependent and diversity‐dependent models receive equivalent support

inferred← citeshttps://doi.org/10.1111/geb.13604openalex-snapshot

Towards a genetic theory of island biogeography: Inferring processes from multidimensional community‐scale data

inferred← citeshttps://doi.org/10.1111/mec.16478openalex-snapshot

Analysing diversification dynamics using barcoding data: The case of an obligate mycorrhizal symbiont

inferred← citeshttps://doi.org/10.3390/life14111469openalex-snapshot

Comparative Phylogeography of Two Specialist Rodents in Forest Fragments in Kenya

inferred← citeshttps://doi.org/10.70675/7fd34ffezc1d2z441azb463z80173e19b9d2openalex-snapshot

Characterizing and modeling the evolution of host-microbiota interactions

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