On the public citation graph

Chromosome Conformation Paints Reveal the Role of Lamina Association in Genome Organization and Regulation

https://doi.org/10.1101/122226
0 signed · 113 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-1-60761-789-1_8openalex-snapshot
3D-FISH on Cultured Cells Combined with Immunostaining
inferredcites →https://doi.org/10.1007/bf00273484openalex-snapshot
Arrangement of chromatin in the nucleus
inferredcites →https://doi.org/10.1007/bf00279065openalex-snapshot
Announcements
inferredcites →https://doi.org/10.1007/s00412-003-0259-zopenalex-snapshot
Replication labeling patterns and chromosome territories typical of mammalian nuclei are conserved in the early metazoan Hydra
inferredcites →https://doi.org/10.1007/s10577-006-1086-xopenalex-snapshot
Chromatin domains and the interchromatin compartment form structurally defined and functionally interacting nuclear networks
inferredcites →https://doi.org/10.1016/bs.mie.2015.09.028openalex-snapshot
Tagged Chromosomal Insertion Site System
inferredcites →https://doi.org/10.1016/j.ceb.2006.04.007openalex-snapshot
Chromosome territories – a functional nuclear landscape
inferredcites →https://doi.org/10.1016/j.ceb.2014.04.005openalex-snapshot
NET gains and losses: the role of changing nuclear envelope proteomes in genome regulation
inferredcites →https://doi.org/10.1016/j.cell.2007.05.009openalex-snapshot
High-Resolution Profiling of Histone Methylations in the Human Genome
inferredcites →https://doi.org/10.1016/j.cell.2012.01.010openalex-snapshot
Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome
inferredcites →https://doi.org/10.1016/j.cell.2012.04.035openalex-snapshot
DNA Sequence-Dependent Compartmentalization and Silencing of Chromatin at the Nuclear Lamina
inferredcites →https://doi.org/10.1016/j.cell.2012.06.051openalex-snapshot
Step-Wise Methylation of Histone H3K9 Positions Heterochromatin at the Nuclear Periphery
inferredcites →https://doi.org/10.1016/j.cell.2013.01.009openalex-snapshot
LBR and Lamin A/C Sequentially Tether Peripheral Heterochromatin and Inversely Regulate Differentiation
inferredcites →https://doi.org/10.1016/j.cell.2013.02.028openalex-snapshot
Single-Cell Dynamics of Genome-Nuclear Lamina Interactions
inferredcites →https://doi.org/10.1016/j.cell.2013.04.053openalex-snapshot
Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment
inferredcites →https://doi.org/10.1016/j.cell.2014.11.021openalex-snapshot
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
inferredcites →https://doi.org/10.1016/j.cell.2015.08.040openalex-snapshot
Genome-wide Maps of Nuclear Lamina Interactions in Single Human Cells
inferredcites →https://doi.org/10.1016/j.cell.2015.11.024openalex-snapshot
CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription
inferredcites →https://doi.org/10.1016/j.celrep.2017.01.034openalex-snapshot
Chromatin States in Mouse Sperm Correlate with Embryonic and Adult Regulatory Landscapes
inferredcites →https://doi.org/10.1016/j.devcel.2004.08.006openalex-snapshot
Assembling a Gene Regulatory Network for Specification of the B Cell Fate
inferredcites →https://doi.org/10.1016/j.gde.2013.11.021openalex-snapshot
Genome regulation at the peripheral zone: lamina associated domains in development and disease
inferredcites →https://doi.org/10.1016/j.molcel.2010.03.016openalex-snapshot
Molecular Maps of the Reorganization of Genome-Nuclear Lamina Interactions during Differentiation
inferredcites →https://doi.org/10.1016/j.stem.2016.01.007openalex-snapshot
Cell-of-Origin-Specific 3D Genome Structure Acquired during Somatic Cell Reprogramming
inferredcites →https://doi.org/10.1016/j.ymeth.2008.06.013openalex-snapshot
Using molecular tethering to analyze the role of nuclear compartmentalization in the regulation of mammalian gene activity
inferredcites →https://doi.org/10.1016/s0076-6879(06)10016-6openalex-snapshot
[16] DamID: Mapping of In Vivo Protein–Genome Interactions Using Tethered DNA Adenine Methyltransferase
inferredcites →https://doi.org/10.1016/s0076-6879(99)04039-2openalex-snapshot
Fluorescence in situ hybridization analysis of chromosome and chromatin structure
inferredcites →https://doi.org/10.1016/s0925-5710(96)00531-2openalex-snapshot
In vitro development of hematopoietic system from mouse embryonic stem cells: a new approach for embryonic hematopoiesis.
inferredcites →https://doi.org/10.1038/35066075openalex-snapshot
Chromosome territories, nuclear architecture and gene regulation in mammalian cells
inferredcites →https://doi.org/10.1038/nature06727openalex-snapshot
Transcriptional repression mediated by repositioning of genes to the nuclear lamina
inferredcites →https://doi.org/10.1038/nature06947openalex-snapshot
Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
inferredcites →https://doi.org/10.1038/nature11049openalex-snapshot
Spatial partitioning of the regulatory landscape of the X-inactivation centre
inferredcites →https://doi.org/10.1038/nature11082openalex-snapshot
Topological domains in mammalian genomes identified by analysis of chromatin interactions
inferredcites →https://doi.org/10.1038/nature16496openalex-snapshot
Super-resolution imaging reveals distinct chromatin folding for different epigenetic states
inferredcites →https://doi.org/10.1038/nature21429openalex-snapshot
3D structures of individual mammalian genomes studied by single-cell Hi-C
inferredcites →https://doi.org/10.1038/nature24281openalex-snapshot
Two independent modes of chromatin organization revealed by cohesin removal
inferredcites →https://doi.org/10.1038/nbt.1716openalex-snapshot
Scalable gene synthesis by selective amplification of DNA pools from high-fidelity microchips
inferredcites →https://doi.org/10.1038/ncomms8147openalex-snapshot
Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes
inferredcites →https://doi.org/10.1038/ng.297openalex-snapshot
Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells
inferredcites →https://doi.org/10.1038/ni.2432openalex-snapshot
Global changes in the nuclear positioning of genes and intra- and interdomain genomic interactions that orchestrate B cell fate
inferredcites →https://doi.org/10.1038/ni1099openalex-snapshot
B cell–specific loss of histone 3 lysine 9 methylation in the VH locus depends on Pax5
inferredcites →https://doi.org/10.1038/ni1226openalex-snapshot
Regulation of interleukin 7–dependent immunoglobulin heavy-chain variable gene rearrangements by transcription factor STAT5
inferredcites →https://doi.org/10.1038/nmeth.2019openalex-snapshot
Fiji: an open-source platform for biological-image analysis
inferredcites →https://doi.org/10.1038/nmeth.3104openalex-snapshot
3D genome reconstruction from chromosomal contacts
inferredcites →https://doi.org/10.1038/nprot.2007.148openalex-snapshot
Detection of in vivo protein–DNA interactions using DamID in mammalian cells
inferredcites →https://doi.org/10.1073/pnas.1213818110openalex-snapshot
Versatile design and synthesis platform for visualizing genomes with Oligopaint FISH probes
inferredcites →https://doi.org/10.1083/jcb.200404107openalex-snapshot
Transcription-dependent spatial arrangements of CFTR and adjacent genes in human cell nuclei
inferredcites →https://doi.org/10.1083/jcb.201305027openalex-snapshot
β-Globin cis-elements determine differential nuclear targeting through epigenetic modifications
inferredcites →https://doi.org/10.1083/jcb.201405110openalex-snapshot
Directed targeting of chromatin to the nuclear lamina is mediated by chromatin state and A-type lamins
inferredcites →https://doi.org/10.1089/cmb.2013.0076openalex-snapshot
3D Chromosome Modeling with Semi-Definite Programming and Hi-C Data
inferredcites →https://doi.org/10.1091/mbc.e15-04-0210openalex-snapshot
Identification of lamin B–regulated chromatin regions based on chromatin landscapes
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btq640openalex-snapshot
The uniqueome: a mappability resource for short-tag sequencing
inferredcites →https://doi.org/10.1093/bioinformatics/btu268openalex-snapshot
A statistical approach for inferring the 3D structure of the genome
inferredcites →https://doi.org/10.1093/biostatistics/kxu003openalex-snapshot
Reproducibility of 3D chromatin configuration reconstructions
inferredcites →https://doi.org/10.1093/hmg/10.3.211openalex-snapshot
The spatial organization of human chromosomes within the nuclei of normal and emerin-mutant cells
inferredcites →https://doi.org/10.1093/nar/30.1.207openalex-snapshot
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
inferredcites →https://doi.org/10.1101/095802openalex-snapshot
Targeted degradation of CTCF decouples local insulation of chromosome domains from higher-order genomic compartmentalization
inferredcites →https://doi.org/10.1101/cshperspect.a003889openalex-snapshot
Chromosome Territories
inferredcites →https://doi.org/10.1101/gad.2021411openalex-snapshot
Subnuclear segregation of genes and core promoter factors in myogenesis
inferredcites →https://doi.org/10.1101/gad.291504openalex-snapshot
Pax5 induces V -to- DJ rearrangements and locus contraction of the immunoglobulin heavy-chain gene
inferredcites →https://doi.org/10.1126/science.1067799openalex-snapshot
Capturing Chromosome Conformation
inferredcites →https://doi.org/10.1126/science.1068768openalex-snapshot
Subnuclear Compartmentalization of Immunoglobulin Loci During Lymphocyte Development
inferredcites →https://doi.org/10.1126/science.1181369openalex-snapshot
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
inferredcites →https://doi.org/10.1128/mcb.23.7.2438-2450.2003openalex-snapshot
Changes in Histone Acetylation Are Associated with Differences in Accessibility of VH Gene Segments to V-DJ Recombination during B-Cell Ontogeny and Development
inferredcites →https://doi.org/10.1186/1471-2164-13-566openalex-snapshot
Euchromatin islands in large heterochromatin domains are enriched for CTCF binding and differentially DNA-methylated regions
inferredcites →https://doi.org/10.1186/gb-2008-9-9-r137openalex-snapshot
Model-based Analysis of ChIP-Seq (MACS)
inferredcites →https://doi.org/10.1186/gb-2009-10-3-r25openalex-snapshot
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
inferredcites →https://doi.org/10.1186/s13059-015-0806-yopenalex-snapshot
HiFive: a tool suite for easy and efficient HiC and 5C data analysis
inferredcites →https://doi.org/10.1242/jcs.02727openalex-snapshot
Neural induction promotes large-scale chromatin reorganisation of the Mash1 locus
inferredcites →https://doi.org/10.1371/journal.pbio.0030157openalex-snapshot
Three-Dimensional Maps of All Chromosomes in Human Male Fibroblast Nuclei and Prometaphase Rosettes
inferredcites →https://doi.org/10.1371/journal.pcbi.1002893openalex-snapshot
Bayesian Inference of Spatial Organizations of Chromosomes
inferredcites →https://doi.org/10.1371/journal.pgen.1000039openalex-snapshot
Recruitment to the Nuclear Periphery Can Alter Expression of Genes in Human Cells
inferredcites →https://doi.org/10.15252/embr.201439789openalex-snapshot
Nuclear lamins are not required for lamina‐associated domain organization in mouse embryonic stem cells
inferredcites →https://doi.org/10.48550/arxiv.1202.6548openalex-snapshot
mlpy: Machine Learning Python

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/1873-3468.14771openalex-snapshot
Choreography of lamina‐associated domains: structure meets dynamics
inferred← citeshttps://doi.org/10.1007/978-1-0716-4192-7_14openalex-snapshot
An Optimized Adaptation of DamID for NGS Applications
inferred← citeshttps://doi.org/10.1007/s13238-020-00794-8openalex-snapshot
Nuclear peripheral chromatin-lamin B1 interaction is required for global integrity of chromatin architecture and dynamics in human cells
inferred← citeshttps://doi.org/10.1016/j.ceb.2019.02.006openalex-snapshot
Chromatin’s physical properties shape the nucleus and its functions
inferred← citeshttps://doi.org/10.1016/j.cell.2019.03.009openalex-snapshot
Promoter-Intrinsic and Local Chromatin Features Determine Gene Repression in LADs
inferred← citeshttps://doi.org/10.1016/j.gde.2021.02.003openalex-snapshot
The shifting shape of genomes: dynamics of heterochromatin interactions at the nuclear lamina
inferred← citeshttps://doi.org/10.1016/j.molcel.2019.10.017openalex-snapshot
Core Components of the Nuclear Pore Bind Distinct States of Chromatin and Contribute to Polycomb Repression
inferred← citeshttps://doi.org/10.1016/j.yjmcc.2020.11.008openalex-snapshot
Three-dimensional chromatin organization in cardiac development and disease
inferred← citeshttps://doi.org/10.1038/s41467-022-31857-5openalex-snapshot
Polycomb-lamina antagonism partitions heterochromatin at the nuclear periphery
inferred← citeshttps://doi.org/10.1038/s41556-020-00630-5openalex-snapshot
Functional mechanisms and abnormalities of the nuclear lamina
inferred← citeshttps://doi.org/10.1038/s41576-018-0063-5openalex-snapshot
Coaching from the sidelines: the nuclear periphery in genome regulation
inferred← citeshttps://doi.org/10.1038/s41576-019-0195-2openalex-snapshot
Methods for mapping 3D chromosome architecture
inferred← citeshttps://doi.org/10.1063/5.0082656openalex-snapshot
Nuclear lamins: Structure and function in mechanobiology
inferred← citeshttps://doi.org/10.1080/19491034.2024.2449520openalex-snapshot
Nuclear envelope and chromatin choreography direct cellular differentiation
inferred← citeshttps://doi.org/10.1083/jcb.201902117openalex-snapshot
Chromatin compartment dynamics in a haploinsufficient model of cardiac laminopathy
inferred← citeshttps://doi.org/10.1093/biostatistics/kxab033openalex-snapshot
Assessing chromatin relocalization in 3D using the patient rule induction method
inferred← citeshttps://doi.org/10.1101/2020.07.28.213884openalex-snapshot
Lamin C regulates genome organization after mitosis
inferred← citeshttps://doi.org/10.1101/2021.12.19.473323openalex-snapshot
Genome organization by SATB1 binding to base-unpairing regions (BURs) provides a scaffold for SATB1-regulated gene expression
inferred← citeshttps://doi.org/10.1101/464081openalex-snapshot
Promoter-intrinsic and local chromatin features determine gene repression in lamina-associated domains
inferred← citeshttps://doi.org/10.1101/481598openalex-snapshot
The repressive genome compartment is established early in the cell cycle before forming the lamina associated domains
inferred← citeshttps://doi.org/10.1101/601849openalex-snapshot
Chromatin-lamin B1 interaction promotes genomic compartmentalization and constrains chromatin dynamics
inferred← citeshttps://doi.org/10.1101/gr.279119.124openalex-snapshot
Suv39h-catalyzed H3K9me3 is critical for euchromatic genome organization and the maintenance of gene transcription
inferred← citeshttps://doi.org/10.1128/jvi.01413-17openalex-snapshot
The Epstein-Barr Virus Episome Maneuvers between Nuclear Chromatin Compartments during Reactivation
inferred← citeshttps://doi.org/10.1134/s0006297918040077openalex-snapshot
Role of Nuclear Lamina in Gene Repression and Maintenance of Chromosome Architecture in the Nucleus
inferred← citeshttps://doi.org/10.1186/s13059-021-02516-7openalex-snapshot
Lamin C is required to establish genome organization after mitosis
inferred← citeshttps://doi.org/10.1186/s13072-019-0308-3openalex-snapshot
Joint inference and alignment of genome structures enables characterization of compartment-independent reorganization across cell types
inferred← citeshttps://doi.org/10.15252/embj.2019103159openalex-snapshot
Local rewiring of genome–nuclear lamina interactions by transcription
inferred← citeshttps://doi.org/10.26508/lsa.202000774openalex-snapshot
Mapping the micro-proteome of the nuclear lamina and lamina-associated domains
inferred← citeshttps://doi.org/10.3390/ijms21249475openalex-snapshot
The Role of Nucleoporin Elys in Nuclear Pore Complex Assembly and Regulation of Genome Architecture
inferred← citeshttps://doi.org/10.3390/ijms242115771openalex-snapshot
Interactions of Chromatin with the Nuclear Lamina and Nuclear Pore Complexes
inferred← citeshttps://doi.org/10.3410/f.735359149.793562715openalex-snapshot
Faculty Opinions recommendation of Chromatin's physical properties shape the nucleus and its functions.
inferred← citeshttps://doi.org/10.3410/f.736388530.793565996openalex-snapshot
Faculty Opinions recommendation of Chromatin compartment dynamics in a haploinsufficient model of cardiac laminopathy.
inferred← citeshttps://doi.org/10.70675/05d2d6b0z39edz4d44z9d8cz18962d4fefbcopenalex-snapshot
Cοntraintes mécaniques et rigidité de l'envelοppe nucléaire dans le gliοblastοme : implicatiοns dans l'hétérοgénéité et l'agressivité tumοrales
inferred← citeshttps://doi.org/10.7554/elife.105915openalex-snapshot
Genome organization by SATB1 binding to base-unpairing regions (BURs) provides a scaffold for SATB1-regulated gene expression
inferred← citeshttps://doi.org/10.7554/elife.105915.1openalex-snapshot
Genome organization by SATB1 binding to base-unpairing regions (BURs) provides a scaffold for SATB1-regulated gene expression
inferred← citeshttps://doi.org/10.7554/elife.105915.2openalex-snapshot
Genome organization by SATB1 binding to base-unpairing regions (BURs) provides a scaffold for SATB1-regulated gene expression
inferred← citeshttps://doi.org/10.7554/elife.105915.3openalex-snapshot
Genome organization by SATB1 binding to base-unpairing regions (BURs) provides a scaffold for SATB1-regulated gene expression
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.