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The repressive genome compartment is established early in the cell cycle before forming the lamina associated domains

https://doi.org/10.1101/481598
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Trichostatin A and trapoxin: Novel chemical probes for the role of histone acetylation in chromatin structure and function
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Multicolor 3D Fluorescence In Situ Hybridization for Imaging Interphase Chromosomes
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DamID: A Methylation-Based Chromatin Profiling Approach
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Fluorescence in situ hybridization with high-complexity repeat-free oligonucleotide probes generated by massively parallel synthesis
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Chromosome territories – a functional nuclear landscape
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NET gains and losses: the role of changing nuclear envelope proteomes in genome regulation
inferredcites →https://doi.org/10.1016/j.cell.2012.04.035openalex-snapshot
DNA Sequence-Dependent Compartmentalization and Silencing of Chromatin at the Nuclear Lamina
inferredcites →https://doi.org/10.1016/j.cell.2012.06.051openalex-snapshot
Step-Wise Methylation of Histone H3K9 Positions Heterochromatin at the Nuclear Periphery
inferredcites →https://doi.org/10.1016/j.cell.2013.01.009openalex-snapshot
LBR and Lamin A/C Sequentially Tether Peripheral Heterochromatin and Inversely Regulate Differentiation
inferredcites →https://doi.org/10.1016/j.cell.2013.02.028openalex-snapshot
Single-Cell Dynamics of Genome-Nuclear Lamina Interactions
inferredcites →https://doi.org/10.1016/j.cell.2013.04.053openalex-snapshot
Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment
inferredcites →https://doi.org/10.1016/j.cell.2014.11.021openalex-snapshot
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
inferredcites →https://doi.org/10.1016/j.cell.2015.08.040openalex-snapshot
Genome-wide Maps of Nuclear Lamina Interactions in Single Human Cells
inferredcites →https://doi.org/10.1016/j.celrep.2017.01.034openalex-snapshot
Chromatin States in Mouse Sperm Correlate with Embryonic and Adult Regulatory Landscapes
inferredcites →https://doi.org/10.1016/j.gde.2013.11.021openalex-snapshot
Genome regulation at the peripheral zone: lamina associated domains in development and disease
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Reversal of H3K9me2 by a Small-Molecule Inhibitor for the G9a Histone Methyltransferase
inferredcites →https://doi.org/10.1016/j.molcel.2010.03.016openalex-snapshot
Molecular Maps of the Reorganization of Genome-Nuclear Lamina Interactions during Differentiation
inferredcites →https://doi.org/10.1016/j.molcel.2018.05.017openalex-snapshot
Lamins Organize the Global Three-Dimensional Genome from the Nuclear Periphery
inferredcites →https://doi.org/10.1016/j.semcancer.2012.12.001openalex-snapshot
Higher order chromatin organization in cancer
inferredcites →https://doi.org/10.1016/j.stem.2016.01.007openalex-snapshot
Cell-of-Origin-Specific 3D Genome Structure Acquired during Somatic Cell Reprogramming
inferredcites →https://doi.org/10.1016/s0076-6879(06)10016-6openalex-snapshot
[16] DamID: Mapping of In Vivo Protein–Genome Interactions Using Tethered DNA Adenine Methyltransferase
inferredcites →https://doi.org/10.1021/acs.biochem.8b00401openalex-snapshot
The Role of Phase Separation in Heterochromatin Formation, Function, and Regulation
inferredcites →https://doi.org/10.1038/nature06727openalex-snapshot
Transcriptional repression mediated by repositioning of genes to the nuclear lamina
inferredcites →https://doi.org/10.1038/nature06947openalex-snapshot
Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
inferredcites →https://doi.org/10.1038/nature11049openalex-snapshot
Spatial partitioning of the regulatory landscape of the X-inactivation centre
inferredcites →https://doi.org/10.1038/nature11082openalex-snapshot
Topological domains in mammalian genomes identified by analysis of chromatin interactions
inferredcites →https://doi.org/10.1038/nature11243openalex-snapshot
A map of the cis-regulatory sequences in the mouse genome
inferredcites →https://doi.org/10.1038/nature12593openalex-snapshot
Single-cell Hi-C reveals cell-to-cell variability in chromosome structure
inferredcites →https://doi.org/10.1038/nature22822openalex-snapshot
Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin
inferredcites →https://doi.org/10.1038/nature22989openalex-snapshot
Phase separation drives heterochromatin domain formation
inferredcites →https://doi.org/10.1038/nature23001openalex-snapshot
Cell-cycle dynamics of chromosomal organization at single-cell resolution
inferredcites →https://doi.org/10.1038/nature24281openalex-snapshot
Two independent modes of chromatin organization revealed by cohesin removal
inferredcites →https://doi.org/10.1038/nbt.1716openalex-snapshot
Scalable gene synthesis by selective amplification of DNA pools from high-fidelity microchips
inferredcites →https://doi.org/10.1038/ncomms8147openalex-snapshot
Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes
inferredcites →https://doi.org/10.1038/ng.297openalex-snapshot
Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells
inferredcites →https://doi.org/10.1038/nmeth.2019openalex-snapshot
Fiji: an open-source platform for biological-image analysis
inferredcites →https://doi.org/10.1038/nprot.2007.148openalex-snapshot
Detection of in vivo protein–DNA interactions using DamID in mammalian cells
inferredcites →https://doi.org/10.1073/pnas.1213818110openalex-snapshot
Versatile design and synthesis platform for visualizing genomes with Oligopaint FISH probes
inferredcites →https://doi.org/10.1083/jcb.200404107openalex-snapshot
Transcription-dependent spatial arrangements of CFTR and adjacent genes in human cell nuclei
inferredcites →https://doi.org/10.1083/jcb.201305027openalex-snapshot
β-Globin cis-elements determine differential nuclear targeting through epigenetic modifications
inferredcites →https://doi.org/10.1083/jcb.201405110openalex-snapshot
Directed targeting of chromatin to the nuclear lamina is mediated by chromatin state and A-type lamins
inferredcites →https://doi.org/10.1083/jcb.201807108openalex-snapshot
Mapping 3D genome organization relative to nuclear compartments using TSA-Seq as a cytological ruler
inferredcites →https://doi.org/10.1093/bioinformatics/19.2.185openalex-snapshot
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btq281openalex-snapshot
Manipulation of FASTQ data with Galaxy
inferredcites →https://doi.org/10.1093/bioinformatics/btq640openalex-snapshot
The uniqueome: a mappability resource for short-tag sequencing
inferredcites →https://doi.org/10.1093/hmg/10.3.211openalex-snapshot
The spatial organization of human chromosomes within the nuclei of normal and emerin-mutant cells
inferredcites →https://doi.org/10.1093/nar/30.1.207openalex-snapshot
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
inferredcites →https://doi.org/10.1101/122226openalex-snapshot
Chromosome Conformation Paints Reveal the Role of Lamina Association in Genome Organization and Regulation
inferredcites →https://doi.org/10.1101/244038openalex-snapshot
Heterochromatin drives organization of conventional and inverted nuclei
inferredcites →https://doi.org/10.1101/464081openalex-snapshot
Promoter-intrinsic and local chromatin features determine gene repression in lamina-associated domains
inferredcites →https://doi.org/10.1101/cshperspect.a003889openalex-snapshot
Chromosome Territories
inferredcites →https://doi.org/10.1101/gad.1583407openalex-snapshot
Switching of the core transcription machinery during myogenesis
inferredcites →https://doi.org/10.1101/gad.2021411openalex-snapshot
Subnuclear segregation of genes and core promoter factors in myogenesis
inferredcites →https://doi.org/10.1101/gad.291504openalex-snapshot
Pax5 induces V -to- DJ rearrangements and locus contraction of the immunoglobulin heavy-chain gene
inferredcites →https://doi.org/10.1101/gr.4086505openalex-snapshot
Galaxy: A platform for interactive large-scale genome analysis
inferredcites →https://doi.org/10.1126/science.1067799openalex-snapshot
Capturing Chromosome Conformation
inferredcites →https://doi.org/10.1126/science.1068768openalex-snapshot
Subnuclear Compartmentalization of Immunoglobulin Loci During Lymphocyte Development
inferredcites →https://doi.org/10.1126/science.1181369openalex-snapshot
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
inferredcites →https://doi.org/10.1158/1535-7163.mct-09-0013openalex-snapshot
DZNep is a global histone methylation inhibitor that reactivates developmental genes not silenced by DNA methylation
inferredcites →https://doi.org/10.1186/gb-2010-11-8-r86openalex-snapshot
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
inferredcites →https://doi.org/10.1186/s13059-015-0806-yopenalex-snapshot
HiFive: a tool suite for easy and efficient HiC and 5C data analysis
inferredcites →https://doi.org/10.1242/jcs.02727openalex-snapshot
Neural induction promotes large-scale chromatin reorganisation of the Mash1 locus
inferredcites →https://doi.org/10.1371/journal.pbio.0030157openalex-snapshot
Three-Dimensional Maps of All Chromosomes in Human Male Fibroblast Nuclei and Prometaphase Rosettes
inferredcites →https://doi.org/10.15252/embr.201439789openalex-snapshot
Nuclear lamins are not required for lamina‐associated domain organization in mouse embryonic stem cells

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/1873-3468.14771openalex-snapshot
Choreography of lamina‐associated domains: structure meets dynamics
inferred← citeshttps://doi.org/10.1016/j.ceb.2019.05.001openalex-snapshot
Two major mechanisms of chromosome organization
inferred← citeshttps://doi.org/10.1016/j.ceb.2020.11.006openalex-snapshot
Attach and stretch: Emerging roles for genome–lamina contacts in shaping the 3D genome
inferred← citeshttps://doi.org/10.1016/j.cell.2020.09.014openalex-snapshot
The Self-Organizing Genome: Principles of Genome Architecture and Function
inferred← citeshttps://doi.org/10.1016/j.devcel.2023.02.018openalex-snapshot
Dynamics of nuclear architecture during early embryonic development and lessons from liveimaging
inferred← citeshttps://doi.org/10.1016/j.gde.2021.02.003openalex-snapshot
The shifting shape of genomes: dynamics of heterochromatin interactions at the nuclear lamina
inferred← citeshttps://doi.org/10.1016/j.gde.2021.101898openalex-snapshot
Cell cycle dynamics and developmental dynamics of the 3D genome: toward linking the two timescales
inferred← citeshttps://doi.org/10.1016/j.gde.2023.102036openalex-snapshot
Genome folding dynamics during the M-to-G1-phase transition
inferred← citeshttps://doi.org/10.1016/j.gde.2024.102193openalex-snapshot
Mechanistic drivers of chromatin organization into compartments
inferred← citeshttps://doi.org/10.1016/j.tcb.2024.01.009openalex-snapshot
Chromosome compartmentalization: causes, changes, consequences, and conundrums
inferred← citeshttps://doi.org/10.1016/j.tibs.2020.01.002openalex-snapshot
Mechanisms and Functions of Chromosome Compartmentalization
inferred← citeshttps://doi.org/10.1038/s41467-020-16732-5openalex-snapshot
Multiplexed imaging of nucleome architectures in single cells of mammalian tissue
inferred← citeshttps://doi.org/10.1038/s41467-026-70787-4openalex-snapshot
Chromatin reorganization drives overexpression of a Btaf1 variant underpinning hematopoietic aging
inferred← citeshttps://doi.org/10.1038/s41594-022-00892-7openalex-snapshot
Diverse silent chromatin states modulate genome compartmentalization and loop extrusion barriers
inferred← citeshttps://doi.org/10.1080/19491034.2022.2153564openalex-snapshot
Aberrant chromatin organization at the nexus of laminopathy disease pathways
inferred← citeshttps://doi.org/10.1093/nar/gkac762openalex-snapshot
High quality mapping of chromatin at or near the nuclear lamina from small numbers of cells reveals cell cycle and developmental changes of chromatin at the nuclear periphery
inferred← citeshttps://doi.org/10.1101/2020.07.28.213884openalex-snapshot
Lamin C regulates genome organization after mitosis
inferred← citeshttps://doi.org/10.1101/2021.01.03.425156openalex-snapshot
High quality mapping of chromatin at or near the nuclear lamina for small numbers of cells
inferred← citeshttps://doi.org/10.1101/2021.12.19.473323openalex-snapshot
Genome organization by SATB1 binding to base-unpairing regions (BURs) provides a scaffold for SATB1-regulated gene expression
inferred← citeshttps://doi.org/10.1101/2025.02.13.638183openalex-snapshot
Effects of Lamina-Chromatin Attachment on Super Long-Range Chromatin Interactions
inferred← citeshttps://doi.org/10.1101/2025.08.07.669116openalex-snapshot
Joint decomposition of Hi-C maps reveals salient features of genome architecture across tissues and development
inferred← citeshttps://doi.org/10.1101/cshperspect.a040113openalex-snapshot
The Nuclear Lamina
inferred← citeshttps://doi.org/10.1146/annurev-genom-121219-083616openalex-snapshot
The Laminopathies and the Insights They Provide into the Structural and Functional Organization of the Nucleus
inferred← citeshttps://doi.org/10.1186/s12859-020-03841-7openalex-snapshot
Inferring chromosome radial organization from Hi-C data
inferred← citeshttps://doi.org/10.1186/s13059-020-02003-5openalex-snapshot
Lamina-associated domains: peripheral matters and internal affairs
inferred← citeshttps://doi.org/10.1186/s13059-021-02516-7openalex-snapshot
Lamin C is required to establish genome organization after mitosis
inferred← citeshttps://doi.org/10.1186/s13059-026-04067-1openalex-snapshot
Jointly-hic: joint decomposition of contact frequency maps captures salient features of genome architecture across tissues and development
inferred← citeshttps://doi.org/10.15252/embr.202050636openalex-snapshot
Cell cycle dynamics of lamina‐associated DNA
inferred← citeshttps://doi.org/10.26508/lsa.202000774openalex-snapshot
Mapping the micro-proteome of the nuclear lamina and lamina-associated domains
inferred← citeshttps://doi.org/10.3389/fgene.2020.00033openalex-snapshot
Radial Organization in the Mammalian Nucleus
inferred← citeshttps://doi.org/10.3390/cells8030271openalex-snapshot
Lamina Associated Domains and Gene Regulation in Development and Cancer
inferred← citeshttps://doi.org/10.3390/ijms22031328openalex-snapshot
A DNA Sequence Based Polymer Model for Chromatin Folding
inferred← citeshttps://doi.org/10.3390/ijms222111585openalex-snapshot
The 3D Genome: From Structure to Function
inferred← citeshttps://doi.org/10.6084/m9.figshare.13211987openalex-snapshot
Additional file 1 of Inferring chromosome radial organization from Hi-C data
inferred← citeshttps://doi.org/10.70675/9bc458efze7cbz44d3zb793z581bbc0e800copenalex-snapshot
Spatio-temporal organisation of histone variants : from nucleosomes to nuclei
inferred← citeshttps://doi.org/10.70675/b29d142fzed1az4785zbb11z225e807d15e5openalex-snapshot
Analyse d'interactions Hox/Cofacteur à l'échelle super-résolutive et contrôle transcriptionnel de l'autophagie chez la drosophile
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