On the public citation graph

UNBIAS: An attempt to correct abundance bias in 16S sequencing, with limited success

https://doi.org/10.1101/124149
0 signed · 82 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-94-015-7358-0openalex-snapshot
Ecological Diversity and Its Measurement
inferredcites →https://doi.org/10.1007/s12033-013-9660-xopenalex-snapshot
Enhancement of PCR Amplification of Moderate GC-Containing and Highly GC-Rich DNA Sequences
inferredcites →https://doi.org/10.1016/s1389-1723(03)90130-7openalex-snapshot
Bias and Artifacts in Multitemplate Polymerase Chain Reactions(PCR)
inferredcites →https://doi.org/10.1016/s1573-5214(05)80004-1openalex-snapshot
A versatile curve-fit model for linear to deeply concave rank abundance curves
inferredcites →https://doi.org/10.1038/193855a0openalex-snapshot
Numerical Taxonomy
inferredcites →https://doi.org/10.1038/ismej.2013.141openalex-snapshot
Resistance and resilience of the forest soil microbiome to logging-associated compaction
inferredcites →https://doi.org/10.1038/nmeth.2276openalex-snapshot
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
inferredcites →https://doi.org/10.1038/nrg3182openalex-snapshot
The human microbiome: at the interface of health and disease
inferredcites →https://doi.org/10.1038/nrmicro3330openalex-snapshot
Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
inferredcites →https://doi.org/10.1093/bioinformatics/btq461openalex-snapshot
Search and clustering orders of magnitude faster than BLAST
inferredcites →https://doi.org/10.1093/nar/gkr771openalex-snapshot
Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform
inferredcites →https://doi.org/10.1093/nar/gng101openalex-snapshot
Regionalized GC content of template DNA as a predictor of PCR success
inferredcites →https://doi.org/10.1098/rspl.1895.0041openalex-snapshot
VII. Note on regression and inheritance in the case of two parents
inferredcites →https://doi.org/10.1098/rstb.2010.0272openalex-snapshot
Phylogenetic diversity measures based on Hill numbers
inferredcites →https://doi.org/10.1101/124156openalex-snapshot
SINAPS: Prediction of microbial traits from marker gene sequences
inferredcites →https://doi.org/10.1111/j.1469-8137.1912.tb05611.xopenalex-snapshot
THE DISTRIBUTION OF THE FLORA IN THE ALPINE ZONE. 1
inferredcites →https://doi.org/10.1111/j.1574-6941.2007.00283.xopenalex-snapshot
Effect of primer mismatch, annealing temperature and PCR cycle number on 16S rRNA gene-targetting bacterial community analysis
inferredcites →https://doi.org/10.1126/science.aac8455openalex-snapshot
The global ocean microbiome
inferredcites →https://doi.org/10.1128/aem.01043-13openalex-snapshot
Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
inferredcites →https://doi.org/10.1128/aem.64.10.3724-3730.1998openalex-snapshot
Bias in Template-to-Product Ratios in Multitemplate PCR
inferredcites →https://doi.org/10.1146/annurev-pathol-011811-132421openalex-snapshot
Human Microbiome in Health and Disease
inferredcites →https://doi.org/10.1371/journal.pcbi.1002743openalex-snapshot
Incorporating 16S Gene Copy Number Information Improves Estimates of Microbial Diversity and Abundance
inferredcites →https://doi.org/10.1371/journal.pone.0043093openalex-snapshot
PCR Biases Distort Bacterial and Archaeal Community Structure in Pyrosequencing Datasets
inferredcites →https://doi.org/10.1371/journal.pone.0057923openalex-snapshot
The Variability of the 16S rRNA Gene in Bacterial Genomes and Its Consequences for Bacterial Community Analyses
inferredcites →https://doi.org/10.1371/journal.pone.0094249openalex-snapshot
Analysis, Optimization and Verification of Illumina-Generated 16S rRNA Gene Amplicon Surveys
inferredcites →https://doi.org/10.1371/journal.pone.0165015openalex-snapshot
Filtration and Normalization of Sequencing Read Data in Whole-Metagenome Shotgun Samples
inferredcites →https://doi.org/10.2144/000113809openalex-snapshot
Length and GC-Biases During Sequencing Library Amplification: A Comparison of Various Polymerase-Buffer Systems with Ancient and Modern DNA Sequencing Libraries
inferredcites →https://doi.org/10.2307/1942268openalex-snapshot
An Ordination of the Upland Forest Communities of Southern Wisconsin
inferredcites →https://doi.org/10.7717/peerj.3889openalex-snapshot
Accuracy of microbial community diversity estimated by closed- and open-reference OTUs

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4669048openalex-extracted
inferred← citeshttps://doi.org/10.1002/ece3.10616openalex-snapshot
An experimental design for obtaining DNA of a target species and its diet from a single non‐invasive genetic protocol
inferred← citeshttps://doi.org/10.1002/edn3.355openalex-snapshot
Environmental DNA metabarcoding read numbers and their variability predict species abundance, but weakly in non‐dominant species
inferred← citeshttps://doi.org/10.1002/lom3.10343openalex-snapshot
Evaluation of accuracy and precision in an amplicon sequencing workflow for marine protist communities
inferred← citeshttps://doi.org/10.1002/qub2.70055openalex-snapshot
Systematic quantification and removal of host DNA contamination in 16S rRNA gene sequencing
inferred← citeshttps://doi.org/10.1007/s00784-021-04273-0openalex-snapshot
Interdental biofilm reduction and composition after use of an activated and inactivated side-to-side toothbrush — a proof-of-principle clinical study
inferred← citeshttps://doi.org/10.1007/s10123-019-00068-2openalex-snapshot
A metagenomics investigation of carbohydrate-active enzymes along the goat and camel intestinal tract
inferred← citeshttps://doi.org/10.1016/j.ecolind.2019.106048openalex-snapshot
Alcaligenaceae and Chromatiaceae as pollution bacterial bioindicators in palm oil mill effluent (POME) final discharge polluted rivers
inferred← citeshttps://doi.org/10.1016/j.ecolind.2022.109215openalex-snapshot
Rare biosphere in cultivated Panax rhizosphere shows deterministic assembly and cross-plant similarity
inferred← citeshttps://doi.org/10.1016/j.foreco.2024.121810openalex-snapshot
Long-term effects of different harvesting intensities on soil microbial communities in a hardwood temperate forest
inferred← citeshttps://doi.org/10.1016/j.ibiod.2022.105485openalex-snapshot
Methodological approaches for the structural, chemical, and microbial analysis of microbial biofilms developed on the surface of cementitious materials: Overview and future prospects
inferred← citeshttps://doi.org/10.1016/j.jenvman.2023.117993openalex-snapshot
Remedial effect and operating status of a decommissioned uranium mill tailings (UMT) repository: A micro-ecological perspective based on bacterial community
inferred← citeshttps://doi.org/10.1016/j.xcrm.2024.101729openalex-snapshot
Mother’s milk microbiota is associated with the developing gut microbial consortia in very-low-birth-weight infants
inferred← citeshttps://doi.org/10.1016/s1473-3099(20)30199-7openalex-snapshot
STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies
inferred← citeshttps://doi.org/10.1038/s41598-017-18668-1openalex-snapshot
Initial evenness determines diversity and cell density dynamics in synthetic microbial ecosystems
inferred← citeshttps://doi.org/10.1038/s41598-019-39149-7openalex-snapshot
Haemolymph microbiome of the cultured spiny lobster Panulirus ornatus at different temperatures
inferred← citeshttps://doi.org/10.1093/gigascience/giaa008openalex-snapshot
GC bias affects genomic and metagenomic reconstructions, underrepresenting GC-poor organisms
inferred← citeshttps://doi.org/10.1093/gigascience/giaa135openalex-snapshot
Dadasnake, a Snakemake implementation of DADA2 to process amplicon sequencing data for microbial ecology
inferred← citeshttps://doi.org/10.1101/124156openalex-snapshot
SINAPS: Prediction of microbial traits from marker gene sequences
inferred← citeshttps://doi.org/10.1101/2025.07.15.664977openalex-snapshot
Distribution Patterns of rRNA Copy Number Repeats in Prokaryotic Genomes
inferred← citeshttps://doi.org/10.1101/303461openalex-snapshot
Counting with DNA in metabarcoding studies: how should we convert sequence reads to dietary data?
inferred← citeshttps://doi.org/10.1101/389833openalex-snapshot
Octave plots for visualizing diversity of microbial OTUs
inferred← citeshttps://doi.org/10.1101/434977openalex-snapshot
Alpha diversity metrics for noisy OTUs
inferred← citeshttps://doi.org/10.1111/1755-0998.13231openalex-snapshot
Using patterns in prey DNA digestion rates to quantify predator diets
inferred← citeshttps://doi.org/10.1111/1755-0998.13294openalex-snapshot
MAUI‐seq: Metabarcoding using amplicons with unique molecular identifiers to improve error correction
inferred← citeshttps://doi.org/10.1111/1755-0998.14119openalex-snapshot
Observation Bias in Metabarcoding
inferred← citeshttps://doi.org/10.1111/mec.14734openalex-snapshot
Counting with DNA in metabarcoding studies: How should we convert sequence reads to dietary data?
inferred← citeshttps://doi.org/10.1111/mec.14987openalex-snapshot
Feedbacks of plant identity and diversity on the diversity and community composition of rhizosphere microbiomes from a long‐term biodiversity experiment
inferred← citeshttps://doi.org/10.1128/msphere.00163-19openalex-snapshot
The Impact of DNA Polymerase and Number of Rounds of Amplification in PCR on 16S rRNA Gene Sequence Data
inferred← citeshttps://doi.org/10.1128/spectrum.01252-23openalex-snapshot
Variable Region Sequences Influence 16S rRNA Performance
inferred← citeshttps://doi.org/10.1186/s13068-018-1189-6openalex-snapshot
Enrichment of syngas-converting mixed microbial consortia for ethanol production and thermodynamics-based design of enrichment strategies
inferred← citeshttps://doi.org/10.1186/s40168-018-0420-9openalex-snapshot
Correcting for 16S rRNA gene copy numbers in microbiome surveys remains an unsolved problem
inferred← citeshttps://doi.org/10.1186/s40168-020-00831-yopenalex-snapshot
Isolation and characterization of diverse microbial representatives from the human skin microbiome
inferred← citeshttps://doi.org/10.1186/s40168-024-01910-0openalex-snapshot
Dynamic alterations and ecological implications of rice rhizosphere bacterial communities induced by an insect-transmitted reovirus across space and time
inferred← citeshttps://doi.org/10.12688/f1000research.20835.1openalex-snapshot
The influence of host genetics on the microbiome
inferred← citeshttps://doi.org/10.1371/journal.pdig.0000389openalex-snapshot
Food & You: A digital cohort on personalized nutrition
inferred← citeshttps://doi.org/10.1371/journal.pone.0262039openalex-snapshot
Trophic and symbiotic links between obligate-glacier water bears (Tardigrada) and cryoconite microorganisms
inferred← citeshttps://doi.org/10.1371/journal.pone.0285674openalex-snapshot
Signal and noise in metabarcoding data
inferred← citeshttps://doi.org/10.3389/fevo.2020.00135openalex-snapshot
A Systematic Review of Sources of Variability and Uncertainty in eDNA Data for Environmental Monitoring
inferred← citeshttps://doi.org/10.3389/fmicb.2020.597911openalex-snapshot
The Composition and Concordance of Lactobacillus Populations of Infant Gut and the Corresponding Breast-Milk and Maternal Gut
inferred← citeshttps://doi.org/10.3389/fmicb.2021.669442openalex-snapshot
Association and Occurrence of Bifidobacterial Phylotypes Between Breast Milk and Fecal Microbiomes in Mother–Infant Dyads During the First 2 Years of Life
inferred← citeshttps://doi.org/10.3389/fmicb.2022.951182openalex-snapshot
Contribution of omics to biopreservation: Toward food microbiome engineering
inferred← citeshttps://doi.org/10.3390/app11020737openalex-snapshot
Monitoring the Antibacterial Effect of Rosin Acids in an Austrian Beet Sugar Plant by Amplicon-Based Sequencing and Flow Cytometry
inferred← citeshttps://doi.org/10.3390/life14060677openalex-snapshot
Low Bacterial Diversity and Nitrate Levels in Cores from Deep Boreholes in Pristine Karst
inferred← citeshttps://doi.org/10.3897/mbmg.3.36408openalex-snapshot
Metabarcoding of soil nematodes: the importance of taxonomic coverage and availability of reference sequences in choosing suitable marker(s)
inferred← citeshttps://doi.org/10.5194/we-26-223-2026openalex-snapshot
Gut microbiomes of the little free-tailed bat ( Mops pumilus ) show high prevalence of potential bacterial pathogens but limited responses to land cover
inferred← citeshttps://doi.org/10.70675/0d2d4921z2c39z4b84zb3a5za8f479f89d14openalex-snapshot
Metabarcoding in the abyss : uncovering deep-sea biodiversity through environmental DNA
inferred← citeshttps://doi.org/10.7287/peerj.4925v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Non-biological synthetic spike-in controls and the AMPtk software pipeline improve mycobiome data (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.4925v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Non-biological synthetic spike-in controls and the AMPtk software pipeline improve mycobiome data (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.4925v0.1/reviews/3openalex-snapshot
Peer Review #3 of "Non-biological synthetic spike-in controls and the AMPtk software pipeline improve mycobiome data (v0.1)"
inferred← citeshttps://doi.org/10.7554/elife.46923openalex-snapshot
Consistent and correctable bias in metagenomic sequencing experiments
inferred← citeshttps://doi.org/10.7717/peerj.3889openalex-snapshot
Accuracy of microbial community diversity estimated by closed- and open-reference OTUs
inferred← citeshttps://doi.org/10.7717/peerj.4925openalex-snapshot
Non-biological synthetic spike-in controls and the AMPtk software pipeline improve mycobiome data
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.