On the public citation graph

Heterogeneity among estimates of the core genome and pan-genome in different pneumococcal populations

https://doi.org/10.1101/133991
0 signed · 42 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.micinf.2015.03.011openalex-snapshot
Filifactor alocis – a new emerging periodontal pathogen
inferredcites →https://doi.org/10.1016/j.trstmh.2011.04.013openalex-snapshot
Molecular epidemiology and genetic diversity of pneumococcal carriage among children in Beni State, Bolivia
inferredcites →https://doi.org/10.1016/j.vaccine.2015.03.012openalex-snapshot
Five winters of pneumococcal serotype replacement in UK carriage following PCV introduction
inferredcites →https://doi.org/10.1016/s0140-6736(10)62225-8openalex-snapshot
Serotype replacement in disease after pneumococcal vaccination
inferredcites →https://doi.org/10.1016/s1473-3099(14)71081-3openalex-snapshot
Effect of use of 13-valent pneumococcal conjugate vaccine in children on invasive pneumococcal disease in children and adults in the USA: analysis of multisite, population-based surveillance
inferredcites →https://doi.org/10.1038/ng.2625openalex-snapshot
Population genomics of post-vaccine changes in pneumococcal epidemiology
inferredcites →https://doi.org/10.1038/ng.2895openalex-snapshot
Dense genomic sampling identifies highways of pneumococcal recombination
inferredcites →https://doi.org/10.1038/nmeth.1377openalex-snapshot
Tn-seq: high-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms
inferredcites →https://doi.org/10.1038/srep42976openalex-snapshot
Pneumococcal prophages are diverse, but not without structure or history
inferredcites →https://doi.org/10.1073/pnas.0506758102openalex-snapshot
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae : Implications for the microbial “pan-genome”
inferredcites →https://doi.org/10.1093/bioinformatics/btl158openalex-snapshot
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
inferredcites →https://doi.org/10.1093/bioinformatics/btn529openalex-snapshot
Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database
inferredcites →https://doi.org/10.1093/bioinformatics/btr039openalex-snapshot
Easyfig: a genome comparison visualizer
inferredcites →https://doi.org/10.1093/bioinformatics/btu153openalex-snapshot
Prokka: rapid prokaryotic genome annotation
inferredcites →https://doi.org/10.1093/bioinformatics/btv421openalex-snapshot
Roary: rapid large-scale prokaryote pan genome analysis
inferredcites →https://doi.org/10.1093/molbev/mst028openalex-snapshot
Hierarchical and Spatially Explicit Clustering of DNA Sequences with BAPS Software
inferredcites →https://doi.org/10.1093/nar/gkf436openalex-snapshot
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
inferredcites →https://doi.org/10.1093/nar/gkr201openalex-snapshot
Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy
inferredcites →https://doi.org/10.1093/nar/gkv1248openalex-snapshot
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
inferredcites →https://doi.org/10.1099/mgen.0.000090openalex-snapshot
Putatively novel serotypes and the potential for reduced vaccine effectiveness: capsular locus diversity revealed among 5405 pneumococcal genomes
inferredcites →https://doi.org/10.1099/mic.0.055459-0openalex-snapshot
Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain
inferredcites →https://doi.org/10.1128/jb.01745-12openalex-snapshot
Modular Evolution of Tn GBS s, a New Family of Integrative and Conjugative Elements Associating Insertion Sequence Transposition, Plasmid Replication, and Conjugation for Their Spreading
inferredcites →https://doi.org/10.1128/jb.184.1.302-306.2002openalex-snapshot
Utilization of l -Ascorbate by Escherichia coli K-12: Assignments of Functions to Products of the yjf-sga and yia-sgb Operons
inferredcites →https://doi.org/10.1128/jcm.00744-15openalex-snapshot
Genomics Reveals the Worldwide Distribution of Multidrug-Resistant Serotype 6E Pneumococci
inferredcites →https://doi.org/10.1128/mbio.01792-15openalex-snapshot
Nonencapsulated Streptococcus pneumoniae: Emergence and Pathogenesis
inferredcites →https://doi.org/10.1186/1471-2105-11-595openalex-snapshot
BIGSdb: Scalable analysis of bacterial genome variation at the population level
inferredcites →https://doi.org/10.1186/1471-2105-13-87openalex-snapshot
PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods
inferredcites →https://doi.org/10.1371/journal.pcbi.1003788openalex-snapshot
Defining the Estimated Core Genome of Bacterial Populations Using a Bayesian Decision Model
inferredcites →https://doi.org/10.1371/journal.pcbi.1004041openalex-snapshot
ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
inferredcites →https://doi.org/10.1371/journal.pone.0009490openalex-snapshot
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
inferredcites →https://doi.org/10.1371/journal.pone.0081539openalex-snapshot
Population Genetic Structure of Streptococcus pneumoniae in Kilifi, Kenya, Prior to the Introduction of Pneumococcal Conjugate Vaccine
inferredcites →https://doi.org/10.1371/journal.pone.0097912openalex-snapshot
Novel Clones of Streptococcus pneumoniae Causing Invasive Disease in Malaysia
inferredcites →https://doi.org/10.1371/journal.pone.0098739openalex-snapshot
Streptococcus pneumoniae Carriage Prevalence in Nepal: Evaluation of a Method for Delayed Transport of Samples from Remote Regions and Implications for Vaccine Implementation
inferredcites →https://doi.org/10.1371/journal.ppat.0030168openalex-snapshot
Vaccine Escape Recombinants Emerge after Pneumococcal Vaccination in the United States
inferredcites →https://doi.org/10.3389/fmicb.2015.01483openalex-snapshot
New Insights into the Classification and Integration Specificity of Streptococcus Integrative Conjugative Elements through Extensive Genome Exploration

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.biortech.2018.04.083openalex-snapshot
Organic loading rate and hydraulic retention time shape distinct ecological networks of anaerobic digestion related microbiome
inferred← citeshttps://doi.org/10.1038/s41598-019-40346-7openalex-snapshot
Identifying genes associated with invasive disease in S. pneumoniae by applying a machine learning approach to whole genome sequence typing data
inferred← citeshttps://doi.org/10.1093/intbio/zyz036openalex-snapshot
Multiplex gene transfer by genetic transformation between isolated S. pneumoniae cells confined in microfluidic droplets
inferred← citeshttps://doi.org/10.1101/2024.01.14.575557openalex-snapshot
Comparative pangenome analysis of major pneumococcal genotypes from India
inferred← citeshttps://doi.org/10.1186/s12864-017-4376-0openalex-snapshot
The variome of pneumococcal virulence factors and regulators
inferred← citeshttps://doi.org/10.3389/fmicb.2018.02580openalex-snapshot
Puzzling Over the Pneumococcal Pangenome
inferred← citeshttps://doi.org/10.3389/fmicb.2019.00317openalex-snapshot
Genomic Analyses of >3,100 Nasopharyngeal Pneumococci Revealed Significant Differences Between Pneumococci Recovered in Four Different Geographical Regions
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.