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Patterns of structural variation in human cancer

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/path.4042openalex-snapshot

Tandem duplication of chromosomal segments is common in ovarian and breast cancer genomes

inferredcites →https://doi.org/10.1007/s00285-015-0875-2openalex-snapshot

Modeling the evolution space of breakage fusion bridge cycles with a stochastic folding process

inferredcites →https://doi.org/10.1016/j.bbagrm.2007.10.005openalex-snapshot

Human chromosome fragility

inferredcites →https://doi.org/10.1016/j.ccell.2014.09.010openalex-snapshot

The Architecture and Evolution of Cancer Neochromosomes

inferredcites →https://doi.org/10.1016/j.cell.2007.11.037openalex-snapshot

A DNA Replication Mechanism for Generating Nonrecurrent Rearrangements Associated with Genomic Disorders

inferredcites →https://doi.org/10.1016/j.cell.2010.11.055openalex-snapshot

Massive Genomic Rearrangement Acquired in a Single Catastrophic Event during Cancer Development

inferredcites →https://doi.org/10.1016/j.cell.2011.12.013openalex-snapshot

Genome Sequencing of Pediatric Medulloblastoma Links Catastrophic DNA Rearrangements with TP53 Mutations

inferredcites →https://doi.org/10.1016/j.cell.2013.02.023openalex-snapshot

Criteria for Inference of Chromothripsis in Cancer Genomes

inferredcites →https://doi.org/10.1016/j.cell.2013.03.021openalex-snapshot

Punctuated Evolution of Prostate Cancer Genomes

inferredcites →https://doi.org/10.1016/j.cell.2015.11.054openalex-snapshot

Chromothripsis and Kataegis Induced by Telomere Crisis

inferredcites →https://doi.org/10.1016/j.cell.2015.12.050openalex-snapshot

Mutational Strand Asymmetries in Cancer Genomes Reveal Mechanisms of DNA Damage and Repair

inferredcites →https://doi.org/10.1016/j.semcancer.2006.10.007openalex-snapshot

Formation of non-random extrachromosomal elements during development, differentiation and oncogenesis

inferredcites →https://doi.org/10.1016/s1535-6108(02)00094-6openalex-snapshot

Telomere dysfunction provokes regional amplification and deletion in cancer genomes

inferredcites →https://doi.org/10.1038/nature08645openalex-snapshot

Complex landscapes of somatic rearrangement in human breast cancer genomes

inferredcites →https://doi.org/10.1038/nature09460openalex-snapshot

The patterns and dynamics of genomic instability in metastatic pancreatic cancer

inferredcites →https://doi.org/10.1038/nature09744openalex-snapshot

The genomic complexity of primary human prostate cancer

inferredcites →https://doi.org/10.1038/nature10802openalex-snapshot

DNA breaks and chromosome pulverization from errors in mitosis

inferredcites →https://doi.org/10.1038/nature11273openalex-snapshot

Chromatin organization is a major influence on regional mutation rates in human cancer cells

inferredcites →https://doi.org/10.1038/nature12213openalex-snapshot

Mutational heterogeneity in cancer and the search for new cancer-associated genes

inferredcites →https://doi.org/10.1038/nature12477openalex-snapshot

Signatures of mutational processes in human cancer

inferredcites →https://doi.org/10.1038/nature13115openalex-snapshot

Constitutional and somatic rearrangement of chromosome 21 in acute lymphoblastic leukaemia

inferredcites →https://doi.org/10.1038/nature14493openalex-snapshot

Chromothripsis from DNA damage in micronuclei

inferredcites →https://doi.org/10.1038/nature17676openalex-snapshot

Landscape of somatic mutations in 560 breast cancer whole-genome sequences

inferredcites →https://doi.org/10.1038/ncomms6224openalex-snapshot

Genomic catastrophes frequently arise in esophageal adenocarcinoma and drive tumorigenesis

inferredcites →https://doi.org/10.1038/ng.128openalex-snapshot

Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing

inferredcites →https://doi.org/10.1038/ng.2874openalex-snapshot

RAG-mediated recombination is the predominant driver of oncogenic rearrangement in ETV6-RUNX1 acute lymphoblastic leukemia

inferredcites →https://doi.org/10.1038/ng.3126openalex-snapshot

Trans-ancestry mutational landscape of hepatocellular carcinoma genomes

inferredcites →https://doi.org/10.1038/ng.944openalex-snapshot

Inverted genomic segments and complex triplication rearrangements are mediated by inverted repeats in the human genome

inferredcites →https://doi.org/10.1093/genetics/26.2.234openalex-snapshot

THE STABILITY OF BROKEN ENDS OF CHROMOSOMES IN ZEA MAYS

inferredcites →https://doi.org/10.1101/gr.118414.110openalex-snapshot

Estimation of rearrangement phylogeny for cancer genomes

inferredcites →https://doi.org/10.1101/gr.6522707openalex-snapshot

Architectures of somatic genomic rearrangement in human cancer amplicons at sequence-level resolution

inferredcites →https://doi.org/10.1371/journal.pgen.1000327openalex-snapshot

A Microhomology-Mediated Break-Induced Replication Model for the Origin of Human Copy Number Variation

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Genomics and the Immune Landscape of Osteosarcoma

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Decoding human cancer with whole genome sequencing: a review of PCAWG Project studies published in February 2020

inferred← citeshttps://doi.org/10.1016/j.cell.2019.02.012openalex-snapshot

Characterizing Mutational Signatures in Human Cancer Cell Lines Reveals Episodic APOBEC Mutagenesis

inferred← citeshttps://doi.org/10.1016/j.mam.2019.07.007openalex-snapshot

The landscape of genomic copy number alterations in colorectal cancer and their consequences on gene expression levels and disease outcome

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Candidate Cancer Driver Mutations in Distal Regulatory Elements and Long-Range Chromatin Interaction Networks

inferred← citeshttps://doi.org/10.1016/j.tig.2020.02.001openalex-snapshot

Catastrophic Endgames: Emerging Mechanisms of Telomere-Driven Genomic Instability

inferred← citeshttps://doi.org/10.1038/s12276-018-0112-3openalex-snapshot

Patterns and mechanisms of structural variations in human cancer

inferred← citeshttps://doi.org/10.1038/s41467-018-05228-yopenalex-snapshot

The therapeutic significance of mutational signatures from DNA repair deficiency in cancer

inferred← citeshttps://doi.org/10.1038/s41467-018-07552-9openalex-snapshot

Cyclin A2/E1 activation defines a hepatocellular carcinoma subclass with a rearrangement signature of replication stress

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Genomic landscape and chronological reconstruction of driver events in multiple myeloma

inferred← citeshttps://doi.org/10.1038/s41467-020-15912-7openalex-snapshot

Mutational signatures are jointly shaped by DNA damage and repair

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The genomic and epigenomic evolutionary history of papillary renal cell carcinomas

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Learning mutational signatures and their multidimensional genomic properties with TensorSignatures

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Aberrant integration of Hepatitis B virus DNA promotes major restructuring of human hepatocellular carcinoma genome architecture

inferred← citeshttps://doi.org/10.1038/s41586-020-1969-6openalex-snapshot

Pan-cancer analysis of whole genomes

inferred← citeshttps://doi.org/10.1038/s41587-019-0366-xopenalex-snapshot

Single-cell analysis of structural variations and complex rearrangements with tri-channel processing

inferred← citeshttps://doi.org/10.1038/s41588-020-0667-5openalex-snapshot

APOBEC3-dependent kataegis and TREX1-driven chromothripsis during telomere crisis

inferred← citeshttps://doi.org/10.1038/s41698-021-00155-6openalex-snapshot

Structural variant detection in cancer genomes: computational challenges and perspectives for precision oncology

inferred← citeshttps://doi.org/10.1101/163907openalex-snapshot

A user’s guide to the online resources for data exploration, visualization, and discovery for the Pan-Cancer Analysis of Whole Genomes project (PCAWG)

inferred← citeshttps://doi.org/10.1101/2019.12.18.881086openalex-snapshot

Revealing the impact of recurrent and rare structural variants in multiple myeloma

inferred← citeshttps://doi.org/10.1101/2021.04.19.440412openalex-snapshot

Aberrant integration of Hepatitis B virus DNA promotes major restructuring of human hepatocellular carcinoma genome architecture

inferred← citeshttps://doi.org/10.1101/215244openalex-snapshot

DriverPower: Combined burden and functional impact tests for cancer driver discovery

inferred← citeshttps://doi.org/10.1101/280446openalex-snapshot

Passenger mutations in 2500 cancer genomes: Overall molecular functional impact and consequences

inferred← citeshttps://doi.org/10.1101/322859openalex-snapshot

The Repertoire of Mutational Signatures in Human Cancer

inferred← citeshttps://doi.org/10.1101/333617openalex-snapshot

Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing

inferred← citeshttps://doi.org/10.1101/372896openalex-snapshot

sigfit: flexible Bayesian inference of mutational signatures

inferred← citeshttps://doi.org/10.1101/416800openalex-snapshot

The landscape of somatic mutation in normal colorectal epithelial cells

inferred← citeshttps://doi.org/10.1101/739474openalex-snapshot

SVFX: a machine-learning framework to quantify the pathogenicity of structural variants

inferred← citeshttps://doi.org/10.1101/781013openalex-snapshot

GRIDSS, PURPLE, LINX: Unscrambling the tumor genome via integrated analysis of structural variation and copy number

inferred← citeshttps://doi.org/10.1101/836296openalex-snapshot

Novel patterns of complex structural variation revealed across thousands of cancer genome graphs

inferred← citeshttps://doi.org/10.1101/849604openalex-snapshot

Single cell tri-channel-processing reveals structural variation landscapes and complex rearrangement processes

inferred← citeshttps://doi.org/10.1101/gr.231696.117openalex-snapshot

Aberrant PRDM9 expression impacts the pan-cancer genomic landscape

inferred← citeshttps://doi.org/10.1111/eva.13190openalex-snapshot

Identifying key questions in the ecology and evolution of cancer

inferred← citeshttps://doi.org/10.1186/s13059-019-1635-1openalex-snapshot

Modeling double strand break susceptibility to interrogate structural variation in cancer

inferred← citeshttps://doi.org/10.1186/s13073-021-00899-7openalex-snapshot

Optimizing Nanopore sequencing-based detection of structural variants enables individualized circulating tumor DNA-based disease monitoring in cancer patients

inferred← citeshttps://doi.org/10.12688/f1000research.16079.1openalex-snapshot

Breaking point: the genesis and impact of structural variation in tumours

inferred← citeshttps://doi.org/10.15252/embj.2019102931openalex-snapshot

SAMHD1‐mediated dNTP degradation is required for efficient DNA repair during antibody class switch recombination

inferred← citeshttps://doi.org/10.21203/rs.3.rs-136297/v1openalex-snapshot

Annotations of Recurrent Structural Variant Events in Pan-cancer Whole Genome Data for Precision Medicine

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Genes copy number variation in colorectal cancer patients as a marker of the disease clinical outcome and response to therapy

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