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Latent Plasticity of Effector-like Exhausted CD8 T cells contributes to memory responses

https://doi.org/10.1101/2020.02.22.960278

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.cell.2016.10.022openalex-snapshot

Hematopoietic Stem Cells Count and Remember Self-Renewal Divisions

inferredcites →https://doi.org/10.1016/j.cell.2018.11.043openalex-snapshot

Dysfunctional CD8 T Cells Form a Proliferative, Dynamically Regulated Compartment within Human Melanoma

inferredcites →https://doi.org/10.1016/j.cell.2019.05.031openalex-snapshot

Comprehensive Integration of Single-Cell Data

inferredcites →https://doi.org/10.1016/j.celrep.2019.10.092openalex-snapshot

PD-1 Signaling Promotes Control of Chronic Viral Infection by Restricting Type-I-Interferon-Mediated Tissue Damage

inferredcites →https://doi.org/10.1016/j.immuni.2016.07.021openalex-snapshot

T Cell Factor 1-Expressing Memory-like CD8+ T Cells Sustain the Immune Response to Chronic Viral Infections

inferredcites →https://doi.org/10.1016/j.immuni.2016.07.023openalex-snapshot

The Transcription Factor AP4 Mediates Resolution of Chronic Viral Infection through Amplification of Germinal Center B Cell Responses

inferredcites →https://doi.org/10.1016/j.immuni.2016.08.018openalex-snapshot

CD8 + Lymphocytes Are Required for Maintaining Viral Suppression in SIV-Infected Macaques Treated with Short-Term Antiretroviral Therapy

inferredcites →https://doi.org/10.1016/j.immuni.2016.10.018openalex-snapshot

The Chemokine Receptor CX3CR1 Defines Three Antigen-Experienced CD8 T Cell Subsets with Distinct Roles in Immune Surveillance and Homeostasis

inferredcites →https://doi.org/10.1016/j.immuni.2018.03.015openalex-snapshot

KLRG1+ Effector CD8+ T Cells Lose KLRG1, Differentiate into All Memory T Cell Lineages, and Convey Enhanced Protective Immunity

inferredcites →https://doi.org/10.1016/j.immuni.2019.09.013openalex-snapshot

TCF-1-Centered Transcriptional Network Drives an Effector versus Exhausted CD8 T Cell-Fate Decision

inferredcites →https://doi.org/10.1016/j.immuni.2019.10.009openalex-snapshot

CD4+ T Cell Help Is Required for the Formation of a Cytolytic CD8+ T Cell Subset that Protects against Chronic Infection and Cancer

inferredcites →https://doi.org/10.1016/j.immuni.2019.11.002openalex-snapshot

Proliferating Transitory T Cells with an Effector-like Transcriptional Signature Emerge from PD-1+ Stem-like CD8+ T Cells during Chronic Infection

inferredcites →https://doi.org/10.1016/j.jviromet.2007.08.025openalex-snapshot

Quantitative PCR technique for detecting lymphocytic choriomeningitis virus in vivo

inferredcites →https://doi.org/10.1038/nature04444openalex-snapshot

Restoring function in exhausted CD8 T cells during chronic viral infection

inferredcites →https://doi.org/10.1038/nature13824openalex-snapshot

Clonal dynamics of native haematopoiesis

inferredcites →https://doi.org/10.1038/nature14242openalex-snapshot

Fundamental properties of unperturbed haematopoiesis from stem cells in vivo

inferredcites →https://doi.org/10.1038/nature19330openalex-snapshot

Defining CD8+ T cells that provide the proliferative burst after PD-1 therapy

inferredcites →https://doi.org/10.1038/nature25144openalex-snapshot

Effector CD8 T cells dedifferentiate into long-lived memory cells

inferredcites →https://doi.org/10.1038/nbt.4314openalex-snapshot

Dimensionality reduction for visualizing single-cell data using UMAP

inferredcites →https://doi.org/10.1038/ncomms9306openalex-snapshot

Functional classification of memory CD8+ T cells by CX3CR1 expression

inferredcites →https://doi.org/10.1038/ni.2046openalex-snapshot

Transcription factor T-bet represses expression of the inhibitory receptor PD-1 and sustains virus-specific CD8+ T cell responses during chronic infection

inferredcites →https://doi.org/10.1038/ni.2606openalex-snapshot

T cells maintain an exhausted phenotype after antigen withdrawal and population reexpansion

inferredcites →https://doi.org/10.1038/nri3862openalex-snapshot

Molecular and cellular insights into T cell exhaustion

inferredcites →https://doi.org/10.1038/s41577-019-0221-9openalex-snapshot

Defining ‘T cell exhaustion’

inferredcites →https://doi.org/10.1038/s41590-019-0312-6openalex-snapshot

Subsets of exhausted CD8+ T cells differentially mediate tumor control and respond to checkpoint blockade

inferredcites →https://doi.org/10.1084/jem.187.9.1383openalex-snapshot

Induction and Exhaustion of Lymphocytic Choriomeningitis Virus–specific Cytotoxic T Lymphocytes Visualized Using Soluble Tetrameric Major Histocompatibility Complex Class I–Peptide Complexes

inferredcites →https://doi.org/10.1084/jem.188.12.2205openalex-snapshot

Viral Immune Evasion Due to Persistence of Activated T Cells Without Effector Function

inferredcites →https://doi.org/10.1084/jem.20121015openalex-snapshot

Programmed death 1 protects from fatal circulatory failure during systemic virus infection of mice

inferredcites →https://doi.org/10.1084/jem.20150186openalex-snapshot

The transcription factors ZEB2 and T-bet cooperate to program cytotoxic T cell terminal differentiation in response to LCMV viral infection

inferredcites →https://doi.org/10.1084/jem.20150194openalex-snapshot

Transcriptional repressor ZEB2 promotes terminal differentiation of CD8+ effector and memory T cell populations during infection

inferredcites →https://doi.org/10.1084/jem.20171352openalex-snapshot

ZEB1, ZEB2, and the miR-200 family form a counterregulatory network to regulate CD8+ T cell fates

inferredcites →https://doi.org/10.1084/jem.20171584openalex-snapshot

Sustained Id2 regulation of E proteins is required for terminal differentiation of effector CD8+ T cells

inferredcites →https://doi.org/10.1126/science.1159806openalex-snapshot

Anomalous Type 17 Response to Viral Infection by CD8 + T Cells Lacking T-bet and Eomesodermin

inferredcites →https://doi.org/10.1126/science.1172815openalex-snapshot

IL-21R on T Cells Is Critical for Sustained Functionality and Control of Chronic Viral Infection

inferredcites →https://doi.org/10.1126/science.1174182openalex-snapshot

IL-21 Is Required to Control Chronic Viral Infection

inferredcites →https://doi.org/10.1126/science.1175194openalex-snapshot

A Vital Role for Interleukin-21 in the Control of a Chronic Viral Infection

inferredcites →https://doi.org/10.1126/science.1208421openalex-snapshot

Late Interleukin-6 Escalates T Follicular Helper Cell Responses and Controls a Chronic Viral Infection

inferredcites →https://doi.org/10.1126/science.1229620openalex-snapshot

Progenitor and Terminal Subsets of CD8 + T Cells Cooperate to Contain Chronic Viral Infection

inferredcites →https://doi.org/10.1126/science.aad0501openalex-snapshot

Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq

inferredcites →https://doi.org/10.1126/sciimmunol.aai8593openalex-snapshot

The TCF1-Bcl6 axis counteracts type I interferon to repress exhaustion and maintain T cell stemness

inferredcites →https://doi.org/10.1128/jvi.01579-09openalex-snapshot

Tissue-Specific Differences in PD-1 and PD-L1 Expression during Chronic Viral Infection: Implications for CD8 T-Cell Exhaustion

inferredcites →https://doi.org/10.1128/jvi.77.8.4911-4927.2003openalex-snapshot

Viral Persistence Alters CD8 T-Cell Immunodominance and Tissue Distribution and Results in Distinct Stages of Functional Impairment

inferredcites →https://doi.org/10.1146/annurev-immunol-041015-055318openalex-snapshot

CD8 T Cell Exhaustion During Chronic Viral Infection and Cancer

inferredcites →https://doi.org/10.1146/annurev-med-012017-043208openalex-snapshot

CD8 T Cell Exhaustion in Chronic Infection and Cancer: Opportunities for Interventions

inferredcites →https://doi.org/10.1172/jci.insight.97828openalex-snapshot

CX3CR1 identifies PD-1 therapy–responsive CD8+ T cells that withstand chemotherapy during cancer chemoimmunotherapy

inferredcites →https://doi.org/10.1182/blood-2008-12-195792openalex-snapshot

Tumor antigen–specific CD8 T cells infiltrating the tumor express high levels of PD-1 and are functionally impaired

inferredcites →https://doi.org/10.21105/joss.00861openalex-snapshot

UMAP: Uniform Manifold Approximation and Projection

inferredcites →https://doi.org/10.4049/jimmunol.1001948openalex-snapshot

Differential Localization of Effector and Memory CD8 T Cell Subsets in Lymphoid Organs during Acute Viral Infection

inferredcites →https://doi.org/10.4049/jimmunol.1201730openalex-snapshot

IL-21 Promotes CD8+ CTL Activity via the Transcription Factor T-bet

inferredcites →https://doi.org/10.4049/jimmunol.1300977openalex-snapshot

Myeloid Cells Limit Production of Antibody-Secreting Cells after Immunization in the Lymph Node

inferredcites →https://doi.org/10.48550/arxiv.1802.03426openalex-snapshot

UMAP: Uniform Manifold Approximation and Projection for Dimension Reduction

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.crmeth.2022.100359openalex-snapshot

Simulation-based inference of differentiation trajectories from RNA velocity fields

inferred← citeshttps://doi.org/10.1101/2020.12.21.423801openalex-snapshot

Cytopath: Simulation-based inference of differentiation trajectories from RNA velocity fields

inferred← citeshttps://doi.org/10.1101/2020.12.22.423929openalex-snapshot

Fate trajectories of CD8 + T cells in chronic LCMV infection

inferred← citeshttps://doi.org/10.1371/journal.pone.0332406openalex-snapshot

Exploratory trajectory inference reveals convergent lineages for CD8 T cells in chronic LCMV infection

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