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eEF3 promotes late stages of tRNA translocation on the ribosome

https://doi.org/10.1101/2020.07.01.182105
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Outgoing claims: the papers this work cites, builds on, or argues with.

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tRNA Translocation by the Eukaryotic 80S Ribosome and the Impact of GTP Hydrolysis
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Visualization of the eEF2–80S Ribosome Transition-State Complex by Cryo-Electron Microscopy
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Structural Insights into the Role of Diphthamide on Elongation Factor 2 in mRNA Reading-Frame Maintenance
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ABCF ATPases Involved in Protein Synthesis, Ribosome Assembly and Antibiotic Resistance: Structural and Functional Diversification across the Tree of Life
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Differential proteomic analysis of Aspergillus fumigatus morphotypes reveals putative drug targets
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RELION: Implementation of a Bayesian approach to cryo-EM structure determination
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Gctf: Real-time CTF determination and correction
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Structure and Dynamics of the Mammalian Ribosomal Pretranslocation Complex
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eIF5A Functions Globally in Translation Elongation and Termination
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High-Resolution Ribosome Profiling Defines Discrete Ribosome Elongation States and Translational Regulation during Cellular Stress
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Structures of Yeast 80S Ribosome-tRNA Complexes in the Rotated and Nonrotated Conformations
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Inhibitors of Protein Biosynthesis
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Role of yeast elongation factor 3 in the elongation cycle
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Transient Kinetics, Fluorescence, and FRET in Studies of Initiation of Translation in Bacteria
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Reconstitution of Yeast Translation Initiation
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Development and characterization of a reconstituted yeast translation initiation system
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Structure and Mechanisms of Lysine Methylation Recognition by the Chromodomain in Gene Transcription
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An in vivo control map for the eukaryotic mRNA translation machinery
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Structure of eEF3 and the mechanism of transfer RNA release from the E-site
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Real-time tRNA transit on single translating ribosomes at codon resolution
inferredcites →https://doi.org/10.1038/nature09206openalex-snapshot
Ribosome dynamics and tRNA movement by time-resolved electron cryomicroscopy
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Structural basis for the inhibition of the eukaryotic ribosome
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Structure of the HP1 chromodomain bound to histone H3 methylated at lysine 9
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Inhibition of eukaryotic translation elongation by cycloheximide and lactimidomycin
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An auxin-based degron system for the rapid depletion of proteins in nonplant cells
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MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy
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Multiperspective smFRET reveals rate-determining late intermediates of ribosomal translocation
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Choreography of molecular movements during ribosome progression along mRNA
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Structure of the 40S–ABCE1 post-splitting complex in ribosome recycling and translation initiation
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Structure of the ribosome-bound cricket paralysis virus IRES RNA
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Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1
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RQT complex dissociates ribosomes collided on endogenous RQC substrate SDD1
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Ribosome profiling analysis of eEF3-depleted Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1038/sj.emboj.7600102openalex-snapshot
Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation
inferredcites →https://doi.org/10.1038/sj.emboj.7601677openalex-snapshot
Structures of modified eEF2·80S ribosome complexes reveal the role of GTP hydrolysis in translocation
inferredcites →https://doi.org/10.1042/bst019279sopenalex-snapshot
Analysis of a novel elongation factor :EF-3
inferredcites →https://doi.org/10.1073/pnas.1216691110openalex-snapshot
Structural basis for potent inhibitory activity of the antibiotic tigecycline during protein synthesis
inferredcites →https://doi.org/10.1073/pnas.1719592115openalex-snapshot
Three tRNAs on the ribosome slow translation elongation
inferredcites →https://doi.org/10.1073/pnas.1808535115openalex-snapshot
Structural basis for antibiotic resistance mediated by the Bacillus subtilis ABCF ATPase VmlR
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A ribosome-dependent GTPase from yeast distinct from elongation factor 2.
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The Elongation Factor 3 Unique in Higher Fungi and Essential for Protein Biosynthesis Is an E Site Factor
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Limited Proteolysis of Yeast Elongation Factor 3
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The Ribosomal L1 Protuberance in Yeast Is Methylated on a Lysine Residue Catalyzed by a Seven-β-strand Methyltransferase
inferredcites →https://doi.org/10.1074/jbc.m113.536201openalex-snapshot
Mutations in the Chromodomain-like Insertion of Translation Elongation Factor 3 Compromise Protein Synthesis through Reduced ATPase Activity
inferredcites →https://doi.org/10.1074/jbc.m209224200openalex-snapshot
Functional Interactions between Yeast Translation Eukaryotic Elongation Factor (eEF) 1A and eEF3
inferredcites →https://doi.org/10.1074/jbc.m414566200openalex-snapshot
Polyribosome Binding by GCN1 Is Required for Full Activation of Eukaryotic Translation Initiation Factor 2α Kinase GCN2 during Amino Acid Starvation
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Domain and Nucleotide Dependence of the Interaction between Saccharomyces cerevisiae Translation Elongation Factors 3 and 1A
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X-ray Structure of the Complete ABC Enzyme ABCE1 from Pyrococcus abyssi
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Modulation of the Rate of Peptidyl Transfer on the Ribosome by the Nature of Substrates
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STAR: ultrafast universal RNA-seq aligner
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Three‐dimensional cryo‐electron microscopy localization of EF2 in the Saccharomyces cerevisiae 80S ribosome at 17.5 Å resolution
inferredcites →https://doi.org/10.1093/emboj/20.11.2954openalex-snapshot
A subcomplex of three eIF3 subunits binds eIF1 and eIF5 and stimulates ribosome binding of mRNA and tRNAiMet
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Solving the riddle of codon usage preferences: a test for translational selection
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Stm1p alters the ribosome association of eukaryotic elongation factor 3 and affects translation elongation
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Saccharomyces Genome Database: the genomics resource of budding yeast
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Possible steps of complete disassembly of post-termination complex by yeast eEF3 deduced from inhibition by translocation inhibitors
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STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
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A role for the Saccharomyces cerevisiae ABCF protein New1 in translation termination/recycling
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Role of Yeast Peptide Elongation Factor 3 (EF-3) at the AA-tRNA Binding Step1
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A role for the Saccharomyces cerevisiae ABCF protein New1 during translation termination
inferredcites →https://doi.org/10.1101/cshperspect.a013706openalex-snapshot
The Elongation, Termination, and Recycling Phases of Translation in Eukaryotes
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Translation in Prokaryotes
inferredcites →https://doi.org/10.1101/gad.12.4.514openalex-snapshot
eIF2 independently binds two distinct eIF2B subcomplexes that catalyze and regulate guanine-nucleotide exchange
inferredcites →https://doi.org/10.1107/s0907444902003001openalex-snapshot
Purification and crystallization of the yeast elongation factor eEF2
inferredcites →https://doi.org/10.1107/s0907444904019158openalex-snapshot
Coot : model-building tools for molecular graphics
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MolProbity : all-atom structure validation for macromolecular crystallography
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PHENIX : a comprehensive Python-based system for macromolecular structure solution
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Towards automated crystallographic structure refinement with phenix.refine
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The Structure of the Eukaryotic Ribosome at 3.0 Å Resolution
inferredcites →https://doi.org/10.1126/science.1255030openalex-snapshot
How the ribosome hands the A-site tRNA to the P site during EF-G–catalyzed translocation
inferredcites →https://doi.org/10.1126/science.aaf7520openalex-snapshot
The cryo-EM structure of a ribosome–Ski2-Ski3-Ski8 helicase complex
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The Ccr4-Not complex monitors the translating ribosome for codon optimality
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Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads
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Stm1 modulates translation after 80S formation inSaccharomyces cerevisiae
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Heat Shock-Induced Accumulation of Translation Elongation and Termination Factors Precedes Assembly of Stress Granules in S. cerevisiae
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Demonstration of translation elongation factor 3 activity from a non-fungal species, Phytophthora infestans
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Collided ribosomes form a unique structural interface to induce Hel2‐driven quality control pathways
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Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2
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Author response: Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2
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New tools for automated high-resolution cryo-EM structure determination in RELION-3
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Author response: New tools for automated high-resolution cryo-EM structure determination in RELION-3

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.molcel.2021.02.022openalex-snapshot
Ribosome states signal RNA quality control
inferred← citeshttps://doi.org/10.1038/s41467-021-23753-1openalex-snapshot
Structural basis of ABCF-mediated resistance to pleuromutilin, lincosamide, and streptogramin A antibiotics in Gram-positive pathogens
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Snapshots of ribosome dynamics near atomic-resolution in situ: full insight into the eukaryotic elongation cycle
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