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Structural basis for antibiotic resistance mediated by the Bacillus subtilis ABCF ATPase VmlR

https://doi.org/10.1073/pnas.1808535115
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Structures of MLSBK Antibiotics Bound to Mutated Large Ribosomal Subunits Provide a Structural Explanation for Resistance
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Drug Sensing by the Ribosome Induces Translational Arrest via Active Site Perturbation
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Antibiotic Resistance ABC-F Proteins: Bringing Target Protection into the Limelight
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Molecular basis for erythromycin-dependent ribosome stalling during translation of the ErmBL leader peptide
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Structure of the Bacillus subtilis 70S ribosome reveals the basis for species-specific stalling
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Prevention of overfitting in cryo-EM structure determination
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MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy
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Ribosome-targeting antibiotics and mechanisms of bacterial resistance
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The ABC-F protein EttA gates ribosome entry into the translation elongation cycle
inferredcites →https://doi.org/10.1038/nsmb.2741openalex-snapshot
EttA regulates translation by binding the ribosomal E site and restricting ribosome-tRNA dynamics
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A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome
inferredcites →https://doi.org/10.1073/pnas.0804276105openalex-snapshot
The oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioning
inferredcites →https://doi.org/10.1073/pnas.1007988107openalex-snapshot
Structures of the Escherichia coli ribosome with antibiotics bound near the peptidyl transferase center explain spectra of drug action
inferredcites →https://doi.org/10.1073/pnas.1015953108openalex-snapshot
Ribosome recycling depends on a mechanistic link between the FeS cluster domain and a conformational switch of the twin-ATPase ABCE1
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Recruitment of a species-specific translational arrest module to monitor different cellular processes
inferredcites →https://doi.org/10.1073/pnas.1208037109openalex-snapshot
Structural basis for TetM-mediated tetracycline resistance
inferredcites →https://doi.org/10.1073/pnas.1403586111openalex-snapshot
Macrolide antibiotics allosterically predispose the ribosome for translation arrest
inferredcites →https://doi.org/10.1073/pnas.1501775112openalex-snapshot
Cryo-EM structure of the tetracycline resistance protein TetM in complex with a translating ribosome at 3.9-Å resolution
inferredcites →https://doi.org/10.1073/pnas.1613055113openalex-snapshot
Context-specific inhibition of translation by ribosomal antibiotics targeting the peptidyl transferase center
inferredcites →https://doi.org/10.1073/pnas.1719592115openalex-snapshot
Three tRNAs on the ribosome slow translation elongation
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Ribosome protection by antibiotic resistance ATP-binding cassette protein
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ATP Hydrolysis and Pristinamycin IIA Inhibition of the Staphylococcus aureus Vga(A), a Dual ABC Protein Involved in Streptogramin A Resistance
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A novel gene, optrA , that confers transferable resistance to oxazolidinones and phenicols and its presence in Enterococcus faecalis and Enterococcus faecium of human and animal origin
inferredcites →https://doi.org/10.1093/nar/gkw470openalex-snapshot
The stringent factor RelA adopts an open conformation on the ribosome to stimulate ppGpp synthesis
inferredcites →https://doi.org/10.1093/nar/gkx658openalex-snapshot
Structural insights of lincosamides targeting the ribosome of Staphylococcus aureus
inferredcites →https://doi.org/10.1093/nar/gky050openalex-snapshot
Antibiotic resistance ABCF proteins reset the peptidyl transferase centre of the ribosome to counter translational arrest
inferredcites →https://doi.org/10.1107/s0907444904019158openalex-snapshot
Coot : model-building tools for molecular graphics
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MolProbity : all-atom structure validation for macromolecular crystallography
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PHENIX : a comprehensive Python-based system for macromolecular structure solution
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Inhibition of peptide bond formation by pleuromutilins: the structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with tiamulin
inferredcites →https://doi.org/10.1126/science.1179700openalex-snapshot
The Crystal Structure of the Ribosome Bound to EF-Tu and Aminoacyl-tRNA
inferredcites →https://doi.org/10.1128/aac.00799-06openalex-snapshot
A New Evolutionary Variant of the Streptogramin A Resistance Protein, Vga(A) LC , from Staphylococcus haemolyticus with Shifted Substrate Specificity towards Lincosamides
inferredcites →https://doi.org/10.1128/aac.04468-14openalex-snapshot
Detailed Mutational Analysis of Vga(A) Interdomain Linker: Implication for Antibiotic Resistance Specificity and Mechanism
inferredcites →https://doi.org/10.1128/jb.187.17.5946-5954.2005openalex-snapshot
Transcriptional Termination Control of a Novel ABC Transporter Gene Involved in Antibiotic Resistance in Bacillus subtilis
inferredcites →https://doi.org/10.1128/mbio.01975-15openalex-snapshot
ABC-F Proteins Mediate Antibiotic Resistance through Ribosomal Protection
inferredcites →https://doi.org/10.1146/annurev-biochem-062917-011942openalex-snapshot
Ribosome-Targeting Antibiotics: Modes of Action, Mechanisms of Resistance, and Implications for Drug Design
inferredcites →https://doi.org/10.1515/hsz-2013-0292openalex-snapshot
Tetracycline antibiotics and resistance mechanisms
inferredcites →https://doi.org/10.3791/55448openalex-snapshot
High-resolution Single Particle Analysis from Electron Cryo-microscopy Images Using SPHIRE
inferredcites →https://doi.org/10.3791/55448-vopenalex-snapshot
High-resolution Single Particle Analysis from Electron Cryo-microscopy Images Using SPHIRE
inferredcites →https://doi.org/10.7554/elife.18722openalex-snapshot
Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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ABCF ATPases Involved in Protein Synthesis, Ribosome Assembly and Antibiotic Resistance: Structural and Functional Diversification across the Tree of Life
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Structures of B. subtilis Maturation RNases Captured on 50S Ribosome with Pre-rRNAs
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Analysis of RNA Methylation by Phylogenetically Diverse Cfr Radical S -Adenosylmethionine Enzymes Reveals an Iron-Binding Accessory Domain in a Clostridial Enzyme
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Visualizing Teixobactin Supramolecular Assemblies and Cell Wall Damage in B. Subtilis Using CryoEM
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Context-specific action of macrolide antibiotics on the eukaryotic ribosome
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Structural basis of ABCF-mediated resistance to pleuromutilin, lincosamide, and streptogramin A antibiotics in Gram-positive pathogens
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Interplay between an ATP-binding cassette F protein and the ribosome from Mycobacterium tuberculosis
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Regulation of the macrolide resistance ABC-F translation factor MsrD
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RAPP-containing arrest peptides induce translational stalling by short circuiting the ribosomal peptidyltransferase activity
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Global regulation via modulation of ribosome pausing by the ABC-F protein EttA
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Diverse mechanisms of translation arrest by a Clostridia ribosome stalling peptide CliM
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Structural insights into YheS-mediated release of SecM-arrested ribosome
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Target protection as a key antibiotic resistance mechanism
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Bacterial ribosome collision sensing by a MutS DNA repair ATPase paralogue
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Performance of EUCAST disc diffusion and supplementary methods to detect reduced susceptibility to linezolid in enterococci— the NordicAST LRE-study
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Phylogenetic diversification of the PoxtA ribosomal protection determinant
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Synthetic oxepanoprolinamide iboxamycin is active against Listeria monocytogenes despite the intrinsic resistance mediated by VgaL/Lmo0919 ABCF ATPase
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Comprehensive classification of ABC ATPases and their functional radiation in nucleoprotein dynamics and biological conflict systems
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Sal-type ABC-F proteins: intrinsic and common mediators of pleuromutilin resistance by target protection in staphylococci
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Expression of Bacillus subtilis ABCF antibiotic resistance factor VmlR is regulated by RNA polymerase pausing, transcription attenuation, translation attenuation and (p)ppGpp
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Genome-encoded ABCF factors implicated in intrinsic antibiotic resistance in Gram-positive bacteria: VmlR2, Ard1 and CplR
inferred← citeshttps://doi.org/10.1093/nar/gkae309openalex-snapshot
The ABCF proteins in Escherichia coli individually cope with ‘hard-to-translate’ nascent peptide sequences
inferred← citeshttps://doi.org/10.1093/nar/gkae399openalex-snapshot
A role for the S4-domain containing protein YlmH in ribosome-associated quality control in Bacillus subtilis
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Resolution of ribosomal stalling by EF-P and ABCF ATPases YfmR and YkpA/YbiT
inferred← citeshttps://doi.org/10.1093/nar/gkaf446openalex-snapshot
Promoting ribosomal incorporation of backbone-modifying nonproteinogenic amino acids into nascent peptides by ATP-binding cassette family-F proteins and EF-P
inferred← citeshttps://doi.org/10.1093/nar/gkag047openalex-snapshot
Yeast elongation factor homolog New1 protects a subset of mRNAs from degradation by no-go decay
inferred← citeshttps://doi.org/10.1093/nar/gkag341openalex-snapshot
The Alteromonas macleodii ribosome enables consecutive incorporation of bulky D-amino acids into peptides
inferred← citeshttps://doi.org/10.1093/nar/gkag617openalex-snapshot
Enhancing ribosomal translation of backbone-altering nonproteinogenic amino acids via YebC and YeeN
inferred← citeshttps://doi.org/10.1093/nar/gkz600openalex-snapshot
A role for the Saccharomyces cerevisiae ABCF protein New1 in translation termination/recycling
inferred← citeshttps://doi.org/10.1098/rsob.190051openalex-snapshot
Translational control of antibiotic resistance
inferred← citeshttps://doi.org/10.1101/2020.07.01.182105openalex-snapshot
eEF3 promotes late stages of tRNA translocation on the ribosome
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Synthetic oxepanoprolinamide iboxamycin is highly active against human pathogen Listeria monocytogenes
inferred← citeshttps://doi.org/10.1101/2023.06.11.543863openalex-snapshot
Comparative genetic, biochemical, and biophysical analyses of the four E. coli ABCF paralogs support distinct functions related to mRNA translation
inferred← citeshttps://doi.org/10.1101/2023.06.15.543498openalex-snapshot
Cryo-EM studies of the four E. coli paralogs establish ABCF proteins as master plumbers of the peptidyl-transferase center of the ribosome
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The ABCF proteins in Escherichia coli individually alleviate nascent peptide-induced noncanonical translations
inferred← citeshttps://doi.org/10.1101/2024.01.25.577322openalex-snapshot
Resolution of ribosomal stalling by ABCF ATPases YfmR and YkpA/YbiT
inferred← citeshttps://doi.org/10.1101/638064openalex-snapshot
A role for the Saccharomyces cerevisiae ABCF protein New1 during translation termination
inferred← citeshttps://doi.org/10.1111/1462-2920.15143openalex-snapshot
Expression of ribosomal protection protein RppA is regulated by a ribosome‐dependent ribo‐regulator and two mistranslation products
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Ribosome Protection as a Mechanism of Lincosamide Resistance in Mycobacterium abscessus
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Ribosomal protection as a linezolid resistance mechanism in Mycobacterium abscessus
inferred← citeshttps://doi.org/10.1128/jb.00452-26openalex-snapshot
Chloramphenicol-mobilized Bacillus subtilis transiently expresses resistance to multiple antibiotics, including the glycopeptides phleomycin and bleomycin
inferred← citeshttps://doi.org/10.1128/mbio.01568-25openalex-snapshot
ABCF protein-mediated resistance shapes bacterial responses to antibiotics based on their type and concentration
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inferred← citeshttps://doi.org/10.1128/mbio.03117-19openalex-snapshot
Cryo-electron Microscopy Structure of the Acinetobacter baumannii 70S Ribosome and Implications for New Antibiotic Development
inferred← citeshttps://doi.org/10.1128/mmbr.00017-26openalex-snapshot
Translation factors that keep the ribosome Pro-active
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Genomic Sequence Analysis of Methicillin- and Carbapenem-Resistant Bacteria Isolated from Raw Sewage
inferred← citeshttps://doi.org/10.1134/s1063774525600632openalex-snapshot
Structural Studies of the ATP-Binding Protein EttA from the Pathogenic Bacterium Staphylococcus aureus by Small-angle X-ray Scattering
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Yeast translation elongation factor eEF3 promotes late stages of tRNA translocation
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Safety Assessment of Bacillus subtilis G8 Isolated from Natto for Food Application
inferred← citeshttps://doi.org/10.29011/2577-1515.100225openalex-snapshot
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Update of the list of QPS‐recommended biological agents intentionally added to food or feed as notified to EFSA 13: suitability of taxonomic units notified to EFSA until September 2020
inferred← citeshttps://doi.org/10.32607/actanaturae.11401openalex-snapshot
Quality Control Mechanisms in Bacterial Translation
inferred← citeshttps://doi.org/10.3389/fmicb.2018.03041openalex-snapshot
Elimination of Ribosome Inactivating Factors Improves the Efficiency of Bacillus subtilis and Saccharomyces cerevisiae Cell-Free Translation Systems
inferred← citeshttps://doi.org/10.3390/antibiotics10111287openalex-snapshot
Mobile Antimicrobial Resistance Genes in Probiotics
inferred← citeshttps://doi.org/10.3390/antibiotics11101302openalex-snapshot
Optimized Chemical Extraction Methods of Antimicrobial Peptides from Roots and Leaves of Extremophilic Plants: Anthyllis sericea and Astragalus armatus Collected from the Tunisian Desert
inferred← citeshttps://doi.org/10.3390/biology10101030openalex-snapshot
Genomic Features and Molecular Function of a Novel Stress-Tolerant Bacillus halotolerans Strain Isolated from an Extreme Environment
inferred← citeshttps://doi.org/10.3390/catal13050900openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/ijms22105356openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/ijms242216478openalex-snapshot
Genome-Wide Identification and Analysis of the ABCF Gene Family in Triticum aestivum
inferred← citeshttps://doi.org/10.3390/ijms26178207openalex-snapshot
Linezolid in the Focus of Antimicrobial Resistance of Enterococcus Species: A Global Overview of Genomic Studies
inferred← citeshttps://doi.org/10.3390/vetsci12030217openalex-snapshot
Antibiotic Resistance Gene Expression in Veterinary Probiotics: Two Sides of the Coin
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Two-component signaling pathways modulate drug resistance of
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Rôles physiologiques et fonctionnels des facteurs de traduction appartenant à la famille ABC-F et leur implication dans la résistance aux antibiotiques
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