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A role for the Saccharomyces cerevisiae ABCF protein New1 during translation termination

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/(sici)1097-0061(19980130)14:2<115::aid-yea204>3.0.co;2-2openalex-snapshot

Designer deletion strains derived fromSaccharomyces cerevisiae S288C: A useful set of strains and plasmids for PCR-mediated gene disruption and other applications

inferredcites →https://doi.org/10.1002/(sici)1097-0061(199807)14:10<953::aid-yea293>3.0.co;2-uopenalex-snapshot

Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1002/(sici)1097-0061(19980915)14:12<1105::aid-yea313>3.0.co;2-yopenalex-snapshot

A highly conserved intraspecies homolog of the Saccharomyces cerevisiae elongation factor-3 encoded by the HEF3 gene

inferredcites →https://doi.org/10.1002/bip.22832openalex-snapshot

Review: Translational GTPases

inferredcites →https://doi.org/10.1002/j.1460-2075.1995.tb07321.xopenalex-snapshot

GCN20, a novel ATP binding cassette protein, and GCN1 reside in a complex that mediates activation of the eIF‐2 alpha kinase GCN2 in amino acid‐starved cells.

inferredcites →https://doi.org/10.1002/jcc.20084openalex-snapshot

UCSF Chimera—A visualization system for exploratory research and analysis

inferredcites →https://doi.org/10.1002/pro.3235openalex-snapshot

UCSF ChimeraX: Meeting modern challenges in visualization and analysis

inferredcites →https://doi.org/10.1006/meth.2001.1183openalex-snapshot

The Tandem Affinity Purification (TAP) Method: A General Procedure of Protein Complex Purification

inferredcites →https://doi.org/10.1007/978-1-4939-6518-2_13openalex-snapshot

Determining if an mRNA is a Substrate of Nonsense-Mediated mRNA Decay in Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1007/bf00330984openalex-snapshot

A positive selection for mutants lacking orotidine-5′-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance

inferredcites →https://doi.org/10.1007/s00018-008-8416-4openalex-snapshot

A structural view of translation initiation in bacteria

inferredcites →https://doi.org/10.1016/0378-1119(92)90454-wopenalex-snapshot

Multifunctional yeast high-copy-number shuttle vectors

inferredcites →https://doi.org/10.1016/j.cell.2015.07.041openalex-snapshot

Rli1/ABCE1 Recycles Terminating Ribosomes and Controls Translation Reinitiation in 3′UTRs In Vivo

inferredcites →https://doi.org/10.1016/j.celrep.2014.06.036openalex-snapshot

Genome-wide Translational Changes Induced by the Prion [PSI+]

inferredcites →https://doi.org/10.1016/j.jmb.2007.01.070openalex-snapshot

Evolution of Budding Yeast Prion-determinant Sequences Across Diverse Fungi

inferredcites →https://doi.org/10.1016/j.jmb.2016.03.022openalex-snapshot

Protein Elongation, Co-translational Folding and Targeting

inferredcites →https://doi.org/10.1016/j.jmb.2018.12.013openalex-snapshot

ABCF ATPases Involved in Protein Synthesis, Ribosome Assembly and Antibiotic Resistance: Structural and Functional Diversification across the Tree of Life

inferredcites →https://doi.org/10.1016/j.jsb.2015.11.003openalex-snapshot

Gctf: Real-time CTF determination and correction

inferredcites →https://doi.org/10.1016/j.molcel.2017.03.003openalex-snapshot

eIF5A Functions Globally in Translation Elongation and Termination

inferredcites →https://doi.org/10.1016/j.molcel.2018.12.009openalex-snapshot

High-Resolution Ribosome Profiling Defines Discrete Ribosome Elongation States and Translational Regulation during Cellular Stress

inferredcites →https://doi.org/10.1016/j.str.2018.05.019openalex-snapshot

Crystal Structure of ATP-Bound Human ABCF1 Demonstrates a Unique Conformation of ABC Proteins

inferredcites →https://doi.org/10.1016/s0021-9258(18)55474-0openalex-snapshot

Protein synthesis in yeast. Structural and functional analysis of the gene encoding elongation factor 3.

inferredcites →https://doi.org/10.1016/s0092-8674(00)81565-2openalex-snapshot

Molecular Basis of a Yeast Prion Species Barrier

inferredcites →https://doi.org/10.1016/s0092-8674(01)00440-8openalex-snapshot

Multiple Gln/Asn-Rich Prion Domains Confer Susceptibility to Induction of the Yeast [PSI] Prion

inferredcites →https://doi.org/10.1021/bi00308a032openalex-snapshot

Monoclonal antibody specific for yeast elongation factor 3

inferredcites →https://doi.org/10.1038/13732openalex-snapshot

A generic protein purification method for protein complex characterization and proteome exploration

inferredcites →https://doi.org/10.1038/nature02046openalex-snapshot

Global analysis of protein expression in yeast

inferredcites →https://doi.org/10.1038/nature02424openalex-snapshot

Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1038/nature05126openalex-snapshot

Structure of eEF3 and the mechanism of transfer RNA release from the E-site

inferredcites →https://doi.org/10.1038/ng0297-137openalex-snapshot

Complete inventory of the yeast ABC proteins

inferredcites →https://doi.org/10.1038/nmeth.2115openalex-snapshot

Prevention of overfitting in cryo-EM structure determination

inferredcites →https://doi.org/10.1038/nmeth.2646openalex-snapshot

pLogo: a probabilistic approach to visualizing sequence motifs

inferredcites →https://doi.org/10.1038/nprot.2016.095openalex-snapshot

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

inferredcites →https://doi.org/10.1038/nsmb.2740openalex-snapshot

The ABC-F protein EttA gates ribosome entry into the translation elongation cycle

inferredcites →https://doi.org/10.1038/nsmb.3396openalex-snapshot

Structure of the 40S–ABCE1 post-splitting complex in ribosome recycling and translation initiation

inferredcites →https://doi.org/10.1038/s41598-019-39403-yopenalex-snapshot

Ribosome profiling analysis of eEF3-depleted Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1042/bst023132sopenalex-snapshot

TRANSLATIONAL ELONGATION FACTOR 3 (EF-3): A STUDY OF ITS STRUCTURAL AND FUNCTIONAL DIVERGENCE IN FUNGI

inferredcites →https://doi.org/10.1073/pnas.1006247107openalex-snapshot

Ribosome recycling step in yeast cytoplasmic protein synthesis is catalyzed by eEF3 and ATP

inferredcites →https://doi.org/10.1073/pnas.1808535115openalex-snapshot

Structural basis for antibiotic resistance mediated by the Bacillus subtilis ABCF ATPase VmlR

inferredcites →https://doi.org/10.1074/jbc.270.35.20473openalex-snapshot

The Elongation Factor 3 Unique in Higher Fungi and Essential for Protein Biosynthesis Is an E Site Factor

inferredcites →https://doi.org/10.1074/jbc.m109.031625openalex-snapshot

ABC50 Promotes Translation Initiation in Mammalian Cells

inferredcites →https://doi.org/10.1074/jbc.m211818200openalex-snapshot

The Quaternary Structure of DNA Polymerase ε from Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1074/jbc.m707347200openalex-snapshot

X-ray Structure of the Complete ABC Enzyme ABCE1 from Pyrococcus abyssi

inferredcites →https://doi.org/10.1093/genetics/122.1.19openalex-snapshot

A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae.

inferredcites →https://doi.org/10.1093/nar/22.25.5767openalex-snapshot

Regulatable promoters of Saccharomyces cerevisiae: comparison of transcriptional activity and their use for heterologous expression

inferredcites →https://doi.org/10.1093/nar/gkj056openalex-snapshot

The SWISS-MODEL Repository: new features and functionalities

inferredcites →https://doi.org/10.1093/nar/gku616openalex-snapshot

Inducible, tightly regulated and growth condition-independent transcription factor in Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1093/nar/gkv171openalex-snapshot

Stabilization of eukaryotic ribosomal termination complexes by deacylated tRNA

inferredcites →https://doi.org/10.1093/nar/gkw1132openalex-snapshot

The SWISS-MODEL Repository—new features and functionality

inferredcites →https://doi.org/10.1093/oxfordjournals.jbchem.a122405openalex-snapshot

Role of Yeast Peptide Elongation Factor 3 (EF-3) at the AA-tRNA Binding Step1

inferredcites →https://doi.org/10.1101/cshperspect.a013706openalex-snapshot

The Elongation, Termination, and Recycling Phases of Translation in Eukaryotes

inferredcites →https://doi.org/10.1101/cshperspect.a032698openalex-snapshot

Ribosome Profiling: Global Views of Translation

inferredcites →https://doi.org/10.1107/s0907444904019158openalex-snapshot

Coot : model-building tools for molecular graphics

inferredcites →https://doi.org/10.1107/s0907444909042073openalex-snapshot

MolProbity : all-atom structure validation for macromolecular crystallography

inferredcites →https://doi.org/10.1107/s0907444909052925openalex-snapshot

PHENIX : a comprehensive Python-based system for macromolecular structure solution

inferredcites →https://doi.org/10.1107/s1399004714021683openalex-snapshot

Tools for macromolecular model building and refinement into electron cryo-microscopy reconstructions

inferredcites →https://doi.org/10.1111/j.1365-2443.2011.01510.xopenalex-snapshot

Yeast prion protein New1 can break Sup35 amyloid fibrils into fragments in an ATP-dependent manner

inferredcites →https://doi.org/10.1111/j.1365-2958.2011.07555.xopenalex-snapshot

Antibiotic‐induced ribosomal assembly defects result from changes in the synthesis of ribosomal proteins

inferredcites →https://doi.org/10.1146/annurev-biochem-060713-035802openalex-snapshot

The Scanning Mechanism of Eukaryotic Translation Initiation

inferredcites →https://doi.org/10.1186/s12864-015-1289-7openalex-snapshot

The evolutionary and functional diversity of classical and lesser-known cytoplasmic and organellar translational GTPases across the tree of life

inferredcites →https://doi.org/10.1251/bpo71openalex-snapshot

Ribosome formation from subunits studied by stopped-flow and rayleigh light scattering

inferredcites →https://doi.org/10.1261/rna.5147804openalex-snapshot

Leaky termination at premature stop codons antagonizes nonsense-mediated mRNA decay in S. cerevisiae

inferredcites →https://doi.org/10.12968/indn.2010.23.8.77875openalex-snapshot

Boosting health through football

inferredcites →https://doi.org/10.1371/journal.pbio.1000213openalex-snapshot

Rational Extension of the Ribosome Biogenesis Pathway Using Network-Guided Genetics

inferredcites →https://doi.org/10.1371/journal.pone.0190524openalex-snapshot

Demonstration of translation elongation factor 3 activity from a non-fungal species, Phytophthora infestans

inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot

Cutadapt removes adapter sequences from high-throughput sequencing reads

inferredcites →https://doi.org/10.7554/elife.01257openalex-snapshot

Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments

inferredcites →https://doi.org/10.7554/elife.06980openalex-snapshot

Measuring the optimal exposure for single particle cryo-EM using a 2.6 Å reconstruction of rotavirus VP6

inferredcites →https://doi.org/10.7554/elife.18722openalex-snapshot

Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2

inferredcites →https://doi.org/10.7554/elife.42166openalex-snapshot

New tools for automated high-resolution cryo-EM structure determination in RELION-3

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1101/2020.07.01.182105openalex-snapshot

eEF3 promotes late stages of tRNA translocation on the ribosome

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