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Strength of selection potentiates distinct adaptive responses in an evolution experiment with outcrossing yeast

https://doi.org/10.1101/2022.05.19.492575

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s00239-023-10094-4openalex-snapshot

Embracing Complexity: Yeast Evolution Experiments Featuring Standing Genetic Variation

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Tolerance and stress response to ethanol in the yeast Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1007/s00253-010-2594-3openalex-snapshot

Mechanisms of ethanol tolerance in Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1016/j.cell.2017.05.038openalex-snapshot

An Expanded View of Complex Traits: From Polygenic to Omnigenic

inferredcites →https://doi.org/10.1038/hdy.2014.86openalex-snapshot

Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation

inferredcites →https://doi.org/10.1038/ng.3604openalex-snapshot

A plethora of pleiotropy across complex traits

inferredcites →https://doi.org/10.1038/nrg3937openalex-snapshot

Elucidating the molecular architecture of adaptation via evolve and resequence experiments

inferredcites →https://doi.org/10.1038/s41576-020-0250-zopenalex-snapshot

Polygenic adaptation: a unifying framework to understand positive selection

inferredcites →https://doi.org/10.1038/s41598-021-99026-0openalex-snapshot

Crossing design shapes patterns of genetic variation in synthetic recombinant populations of Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1093/molbev/msac248openalex-snapshot

Adaptation in Outbred Sexual Yeast is Repeatable, Polygenic and Favors Rare Haplotypes

inferredcites →https://doi.org/10.1093/molbev/msv136openalex-snapshot

Whole-Genome Resequencing of Experimental Populations Reveals Polygenic Basis of Egg-Size Variation in Drosophila melanogaster

inferredcites →https://doi.org/10.1093/molbev/msw282openalex-snapshot

Genomics of Parallel Experimental Evolution in Drosophila

inferredcites →https://doi.org/10.1093/molbev/msy233openalex-snapshot

Evolution of the Yeast Recombination Landscape

inferredcites →https://doi.org/10.1093/molbev/msz183openalex-snapshot

Optimizing the Power to Identify the Genetic Basis of Complex Traits with Evolve and Resequence Studies

inferredcites →https://doi.org/10.1101/2022.05.19.492575openalex-snapshot

Strength of selection potentiates distinct adaptive responses in an evolution experiment with outcrossing yeast

inferredcites →https://doi.org/10.1101/721340openalex-snapshot

Distance to trait optimum is a crucial factor determining the genomic signature of polygenic adaptation

inferredcites →https://doi.org/10.1111/2041-210x.12810openalex-snapshot

Identifying consistent allele frequency differences in studies of stratified populations

inferredcites →https://doi.org/10.1111/j.1567-1364.2009.00583.xopenalex-snapshot

Generation of a large set of genetically tractable haploid and diploidSaccharomyces strains

inferredcites →https://doi.org/10.1111/jeb.14134openalex-snapshot

Bait‐ER: A Bayesian method to detect targets of selection in Evolve‐and‐Resequence experiments

inferredcites →https://doi.org/10.1111/mec.15347openalex-snapshot

Genomic processes underlying rapid adaptation of a natural Chironomus riparius population to unintendedly applied experimental selection pressures

inferredcites →https://doi.org/10.1111/mec.15687openalex-snapshot

Increased time sampling in an evolve‐and‐resequence experiment with outcrossing Saccharomyces cerevisiae reveals multiple paths of adaptive change

inferredcites →https://doi.org/10.1111/mec.15790openalex-snapshot

Can laboratory evolution experiments teach us about natural populations?

inferredcites →https://doi.org/10.1186/s12859-016-1016-7openalex-snapshot

Growthcurver: an R package for obtaining interpretable metrics from microbial growth curves

inferredcites →https://doi.org/10.1186/s13059-019-1770-8openalex-snapshot

Benchmarking software tools for detecting and quantifying selection in evolve and resequencing studies

inferredcites →https://doi.org/10.1186/s13059-021-02425-9openalex-snapshot

The genetic architecture of temperature adaptation is shaped by population ancestry and not by selection regime

inferredcites →https://doi.org/10.1371/journal.pgen.1005635openalex-snapshot

Adaptation to High Ethanol Reveals Complex Evolutionary Pathways

inferredcites →https://doi.org/10.1371/journal.pgen.1007794openalex-snapshot

Genetic architecture and selective sweeps after polygenic adaptation to distant trait optima

inferredcites →https://doi.org/10.1371/journal.pone.0131262openalex-snapshot

Correction: Inexpensive Multiplexed Library Preparation for Megabase-Sized Genomes

inferredcites →https://doi.org/10.1534/genetics.115.175075openalex-snapshot

Power Analysis of Artificial Selection Experiments Using Efficient Whole Genome Simulation of Quantitative Traits

inferredcites →https://doi.org/10.1534/genetics.120.303202openalex-snapshot

Two Synthetic 18-Way Outcrossed Populations of Diploid Budding Yeast with Utility for Complex Trait Dissection

inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot

R: A Language and Environment for Statistical Computing

inferredcites →https://doi.org/10.3389/fgene.2020.597482openalex-snapshot

Heat Shock Improves Random Spore Analysis in Diverse Strains of Saccharomyces cerevisiae

inferredcites →https://doi.org/10.3929/ethz-b-000105397openalex-snapshot

Fitting Linear Mixed-Effects Models Using lme4

inferredcites →https://doi.org/10.4161/fly.19695openalex-snapshot

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

inferredcites →https://doi.org/10.7554/elife.66697openalex-snapshot

Polygenic adaptation after a sudden change in environment

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s00239-022-10088-8openalex-snapshot

Loss of Heterozygosity and Its Importance in Evolution

inferred← citeshttps://doi.org/10.1007/s00239-023-10094-4openalex-snapshot

Embracing Complexity: Yeast Evolution Experiments Featuring Standing Genetic Variation

inferred← citeshttps://doi.org/10.1093/gbe/evag225openalex-snapshot

Dissecting Fluctuating Selection: A Unified Population and Quantitative Genetics Framework

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