On the public citation graph

Exploring Dynamic Modulation of Binding, Allostery and Immune Resistance in the SARS-CoV-2 Spike Complexes with Classes of Antibodies Targeting Cryptic Binding Sites: Antibody-Specific Augmentations of Conserved Allosteric Architecture Can Influence Evolution of Viral Escape

https://doi.org/10.1101/2025.06.28.662162

0 signed · 135 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.

Claim with ORCID

Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.

See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/prot.22488openalex-snapshot

Improved prediction of protein side‐chain conformations with SCWRL4

inferredcites →https://doi.org/10.1007/978-1-0716-0708-4_20openalex-snapshot

Protocols for Fast Simulations of Protein Structure Flexibility Using CABS-Flex and SURPASS

inferredcites →https://doi.org/10.1016/j.bpj.2010.08.079openalex-snapshot

Interaction Energy Based Protein Structure Networks

inferredcites →https://doi.org/10.1016/j.cell.2020.02.058openalex-snapshot

Structure, Function, and Antigenicity of the SARS-CoV-2 Spike Glycoprotein

inferredcites →https://doi.org/10.1016/j.cell.2020.03.045openalex-snapshot

Structural and Functional Basis of SARS-CoV-2 Entry by Using Human ACE2

inferredcites →https://doi.org/10.1016/j.cell.2020.09.037openalex-snapshot

Mapping Neutralizing and Immunodominant Sites on the SARS-CoV-2 Spike Receptor-Binding Domain by Structure-Guided High-Resolution Serology

inferredcites →https://doi.org/10.1016/j.cell.2022.01.019openalex-snapshot

Structural and functional characterizations of infectivity and immune evasion of SARS-CoV-2 Omicron

inferredcites →https://doi.org/10.1016/j.cell.2022.12.018openalex-snapshot

Alarming antibody evasion properties of rising SARS-CoV-2 BQ and XBB subvariants

inferredcites →https://doi.org/10.1016/j.cell.2024.09.026openalex-snapshot

A potent pan-sarbecovirus neutralizing antibody resilient to epitope diversification

inferredcites →https://doi.org/10.1016/j.celrep.2022.111845openalex-snapshot

Rational identification of potent and broad sarbecovirus-neutralizing antibody cocktails from SARS convalescents

inferredcites →https://doi.org/10.1016/j.celrep.2023.112443openalex-snapshot

Enhanced evasion of neutralizing antibody response by Omicron XBB.1.5, CH.1.1, and CA.3.1 variants

inferredcites →https://doi.org/10.1016/j.celrep.2024.114520openalex-snapshot

Neutralization escape, infectivity, and membrane fusion of JN.1-derived SARS-CoV-2 SLip, FLiRT, and KP.2 variants

inferredcites →https://doi.org/10.1016/j.celrep.2025.115543openalex-snapshot

Antibody evasiveness of SARS-CoV-2 subvariants KP.3.1.1 and XEC

inferredcites →https://doi.org/10.1016/j.celrep.2025.115941openalex-snapshot

Structural and functional insights into the evolution of SARS-CoV-2 KP.3.1.1 spike protein

inferredcites →https://doi.org/10.1016/j.chom.2020.11.001openalex-snapshot

Real-Time Conformational Dynamics of SARS-CoV-2 Spikes on Virus Particles

inferredcites →https://doi.org/10.1016/j.chom.2022.07.016openalex-snapshot

Antibody escape and cryptic cross-domain stabilization in the SARS-CoV-2 Omicron spike protein

inferredcites →https://doi.org/10.1016/j.chom.2024.01.001openalex-snapshot

Virological characteristics of the SARS-CoV-2 BA.2.86 variant

inferredcites →https://doi.org/10.1016/j.isci.2024.110208openalex-snapshot

A cryptic site in class 5 epitope of SARS-CoV-2 RBD maintains highly conservation across natural isolates

inferredcites →https://doi.org/10.1016/j.molcel.2022.03.028openalex-snapshot

Structural Diversity of the SARS-CoV-2 Omicron Spike

inferredcites →https://doi.org/10.1016/j.str.2023.11.015openalex-snapshot

Antibody targeting of conserved sites of vulnerability on the SARS-CoV-2 spike receptor-binding domain

inferredcites →https://doi.org/10.1016/j.xcrm.2024.101553openalex-snapshot

A structure-function analysis shows SARS-CoV-2 BA.2.86 balances antibody escape and ACE2 affinity

inferredcites →https://doi.org/10.1016/s1473-3099(22)00422-4openalex-snapshot

Augmented neutralisation resistance of emerging omicron subvariants BA.2.12.1, BA.4, and BA.5

inferredcites →https://doi.org/10.1016/s1473-3099(23)00278-5openalex-snapshot

Virological characteristics of the SARS-CoV-2 omicron XBB.1.16 variant

inferredcites →https://doi.org/10.1016/s1473-3099(23)00555-8openalex-snapshot

Antibody neutralisation of emerging SARS-CoV-2 subvariants: EG.5.1 and XBC.1.6

inferredcites →https://doi.org/10.1016/s1473-3099(23)00573-xopenalex-snapshot

Antigenicity and infectivity characterisation of SARS-CoV-2 BA.2.86

inferredcites →https://doi.org/10.1016/s1473-3099(23)00744-2openalex-snapshot

Fast evolution of SARS-CoV-2 BA.2.86 to JN.1 under heavy immune pressure

inferredcites →https://doi.org/10.1016/s1473-3099(23)00813-7openalex-snapshot

Virological characteristics of the SARS-CoV-2 JN.1 variant

inferredcites →https://doi.org/10.1016/s1473-3099(24)00298-6openalex-snapshot

Virological characteristics of the SARS-CoV-2 KP.2 variant

inferredcites →https://doi.org/10.1016/s1473-3099(24)00415-8openalex-snapshot

Virological characteristics of the SARS-CoV-2 KP.3, LB.1, and KP.2.3 variants

inferredcites →https://doi.org/10.1016/s1473-3099(24)00505-xopenalex-snapshot

Virological characteristics of the SARS-CoV-2 KP.3.1.1 variant

inferredcites →https://doi.org/10.1016/s1473-3099(24)00731-xopenalex-snapshot

Virological characteristics of the SARS-CoV-2 XEC variant

inferredcites →https://doi.org/10.1016/s1473-3099(24)00738-2openalex-snapshot

Enhanced immune evasion of SARS-CoV-2 variants KP.3.1.1 and XEC through N-terminal domain mutations

inferredcites →https://doi.org/10.1016/s1473-3099(25)00015-5openalex-snapshot

Virological and antigenic characteristics of SARS-CoV-2 variants LF.7.2.1, NP.1, and LP.8.1

inferredcites →https://doi.org/10.1016/s1473-3099(25)00308-1openalex-snapshot

Antigenic and virological characteristics of SARS-CoV-2 variants BA.3.2, XFG, and NB.1.8.1

inferredcites →https://doi.org/10.1016/s2666-5247(23)00373-7openalex-snapshot

Characteristics of the SARS-CoV-2 omicron HK.3 variant harbouring the FLip substitution

inferredcites →https://doi.org/10.1021/acs.chemrev.6b00163openalex-snapshot

Coarse-Grained Protein Models and Their Applications

inferredcites →https://doi.org/10.1021/acs.jcim.3c00778openalex-snapshot

Markov State Models and Perturbation-Based Approaches Reveal Distinct Dynamic Signatures and Hidden Allosteric Pockets in the Emerging SARS-Cov-2 Spike Omicron Variant Complexes with the Host Receptor: The Interplay of Dynamics and Convergent Evolution Modulates Allostery and Functional Mechanisms

inferredcites →https://doi.org/10.1021/acs.jctc.5b00648openalex-snapshot

A Stochastic Algorithm for the Isobaric–Isothermal Ensemble with Ewald Summations for All Long Range Forces

inferredcites →https://doi.org/10.1021/acs.jctc.5b00935openalex-snapshot

CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field

inferredcites →https://doi.org/10.1021/acs.jpcb.4c01341openalex-snapshot

AlphaFold2 Predictions of Conformational Ensembles and Atomistic Simulations of the SARS-CoV-2 Spike XBB Lineages Reveal Epistatic Couplings between Convergent Mutational Hotspots that Control ACE2 Affinity

inferredcites →https://doi.org/10.1021/acs.jpcb.7b11734openalex-snapshot

Biomolecular Simulations under Realistic Macroscopic Salt Conditions

inferredcites →https://doi.org/10.1021/ct100578zopenalex-snapshot

PROPKA3: Consistent Treatment of Internal and Surface Residues in Empirical p K a Predictions

inferredcites →https://doi.org/10.1021/ct200133yopenalex-snapshot

Improved Treatment of Ligands and Coupling Effects in Empirical Calculation and Rationalization of p K a Values

inferredcites →https://doi.org/10.1038/nmeth.4067openalex-snapshot

CHARMM36m: an improved force field for folded and intrinsically disordered proteins

inferredcites →https://doi.org/10.1038/s41392-025-02139-5openalex-snapshot

Recombinant XBB.1.5 boosters induce robust neutralization against KP.2- and KP.3-included JN.1 sublineages

inferredcites →https://doi.org/10.1038/s41421-024-00752-2openalex-snapshot

Structural and molecular basis of the epistasis effect in enhanced affinity between SARS-CoV-2 KP.3 and ACE2

inferredcites →https://doi.org/10.1038/s41423-020-0400-4openalex-snapshot

Characterization of the receptor-binding domain (RBD) of 2019 novel coronavirus: implication for development of RBD protein as a viral attachment inhibitor and vaccine

inferredcites →https://doi.org/10.1038/s41423-023-00988-0openalex-snapshot

Profound neutralization evasion and augmented host cell entry are hallmarks of the fast-spreading SARS-CoV-2 lineage XBB.1.5

inferredcites →https://doi.org/10.1038/s41467-022-28528-wopenalex-snapshot

Structural basis for SARS-CoV-2 Delta variant recognition of ACE2 receptor and broadly neutralizing antibodies

inferredcites →https://doi.org/10.1038/s41467-023-42408-xopenalex-snapshot

Defining neutralization and allostery by antibodies against COVID-19 variants

inferredcites →https://doi.org/10.1038/s41467-023-43703-3openalex-snapshot

Evolution and neutralization escape of the SARS-CoV-2 BA.2.86 subvariant

inferredcites →https://doi.org/10.1038/s41467-024-51973-8openalex-snapshot

Structural basis for the evolution and antibody evasion of SARS-CoV-2 BA.2.86 and JN.1 subvariants

inferredcites →https://doi.org/10.1038/s41467-024-53195-4openalex-snapshot

The genetic architecture of protein interaction affinity and specificity

inferredcites →https://doi.org/10.1038/s41467-026-74517-8openalex-snapshot

Allostery is a widespread cause of loss-of-function variant pathogenicity

inferredcites →https://doi.org/10.1038/s41564-025-02030-7openalex-snapshot

Viral evolution prediction identifies broadly neutralizing antibodies to existing and prospective SARS-CoV-2 variants

inferredcites →https://doi.org/10.1038/s41577-022-00784-3openalex-snapshot

Broadly neutralizing antibodies to SARS-CoV-2 and other human coronaviruses

inferredcites →https://doi.org/10.1038/s41586-020-2349-yopenalex-snapshot

Cross-neutralization of SARS-CoV-2 by a human monoclonal SARS-CoV antibody

inferredcites →https://doi.org/10.1038/s41586-020-2772-0openalex-snapshot

Receptor binding and priming of the spike protein of SARS-CoV-2 for membrane fusion

inferredcites →https://doi.org/10.1038/s41586-020-2852-1openalex-snapshot

SARS-CoV-2 neutralizing antibody structures inform therapeutic strategies

inferredcites →https://doi.org/10.1038/s41586-021-03807-6openalex-snapshot

SARS-CoV-2 RBD antibodies that maximize breadth and resistance to escape

inferredcites →https://doi.org/10.1038/s41586-021-03817-4openalex-snapshot

Broad sarbecovirus neutralization by a human monoclonal antibody

inferredcites →https://doi.org/10.1038/s41586-021-04385-3openalex-snapshot

Omicron escapes the majority of existing SARS-CoV-2 neutralizing antibodies

inferredcites →https://doi.org/10.1038/s41586-022-04581-9openalex-snapshot

Molecular basis of receptor binding and antibody neutralization of Omicron

inferredcites →https://doi.org/10.1038/s41586-022-04980-yopenalex-snapshot

BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection

inferredcites →https://doi.org/10.1038/s41586-022-05644-7openalex-snapshot

Imprinted SARS-CoV-2 humoral immunity induces convergent Omicron RBD evolution

inferredcites →https://doi.org/10.1038/s41586-023-06750-wopenalex-snapshot

Antigenicity and receptor affinity of SARS-CoV-2 BA.2.86 spike

inferredcites →https://doi.org/10.1038/s41586-023-06753-7openalex-snapshot

Repeated Omicron exposures override ancestral SARS-CoV-2 immune imprinting

inferredcites →https://doi.org/10.1038/s41586-023-06954-0openalex-snapshot

The energetic and allosteric landscape for KRAS inhibition

inferredcites →https://doi.org/10.1038/s41586-024-08315-xopenalex-snapshot

Evolving antibody response to SARS-CoV-2 antigenic shift from XBB to JN.1

inferredcites →https://doi.org/10.1038/s41594-020-0478-5openalex-snapshot

A thermostable, closed SARS-CoV-2 spike protein trimer

inferredcites →https://doi.org/10.1038/s41594-020-0479-4openalex-snapshot

Controlling the SARS-CoV-2 spike glycoprotein conformation

inferredcites →https://doi.org/10.1038/s41594-020-0483-8openalex-snapshot

Structure-guided covalent stabilization of coronavirus spike glycoprotein trimers in the closed conformation

inferredcites →https://doi.org/10.1038/s41594-022-00735-5openalex-snapshot

The SARS-CoV-2 spike reversibly samples an open-trimer conformation exposing novel epitopes

inferredcites →https://doi.org/10.1063/1.3149788openalex-snapshot

Langevin thermostat for rigid body dynamics

inferredcites →https://doi.org/10.1063/1.328693openalex-snapshot

Polymorphic transitions in single crystals: A new molecular dynamics method

inferredcites →https://doi.org/10.1063/1.445869openalex-snapshot

Comparison of simple potential functions for simulating liquid water

inferredcites →https://doi.org/10.1063/1.467468openalex-snapshot

Constant pressure molecular dynamics algorithms

inferredcites →https://doi.org/10.1063/1.470648openalex-snapshot

Constant pressure molecular dynamics simulation: The Langevin piston method

inferredcites →https://doi.org/10.1063/5.0014475openalex-snapshot

Scalable molecular dynamics on CPU and GPU architectures with NAMD

inferredcites →https://doi.org/10.1073/pnas.0702265104openalex-snapshot

Characterization of protein-folding pathways by reduced-space modeling

inferredcites →https://doi.org/10.1073/pnas.0810961106openalex-snapshot

Dynamical networks in tRNA:protein complexes

inferredcites →https://doi.org/10.1073/pnas.2205784119openalex-snapshot

A broad and potent neutralization epitope in SARS-related coronaviruses

inferredcites →https://doi.org/10.1080/22221751.2023.2270069openalex-snapshot

Immune evasion and membrane fusion of SARS-CoV-2 XBB subvariants EG.5.1 and XBB.2.3

inferredcites →https://doi.org/10.1080/22221751.2024.2402880openalex-snapshot

Recurrent SARS-CoV-2 spike mutations confer growth advantages to select JN.1 sublineages

inferredcites →https://doi.org/10.1093/bib/bbad491openalex-snapshot

Quantification of biases in predictions of protein–protein binding affinity changes upon mutations

inferredcites →https://doi.org/10.1093/bioinformatics/btp445openalex-snapshot

Fast and accurate predictions of protein stability changes upon mutations using statistical potentials and neural networks: PoPMuSiC-2.0

inferredcites →https://doi.org/10.1093/bioinformatics/bty685openalex-snapshot

CABS-flex standalone: a simulation environment for fast modeling of protein flexibility

inferredcites →https://doi.org/10.1093/glycob/cwz003openalex-snapshot

CHARMM-GUIGlycan Modelerfor modeling and simulation of carbohydrates and glycoconjugates

inferredcites →https://doi.org/10.1093/nar/gkac365openalex-snapshot

RING 3.0: fast generation of probabilistic residue interaction networks from structural ensembles

inferredcites →https://doi.org/10.1093/nar/gkae337openalex-snapshot

RING 4.0: faster residue interaction networks with novel interaction types across over 35,000 different chemical structures

inferredcites →https://doi.org/10.1093/nar/gkl113openalex-snapshot

ArchPRED: a template based loop structure prediction server

inferredcites →https://doi.org/10.1093/nar/gkt450openalex-snapshot

BeAtMuSiC: prediction of changes in protein–protein binding affinity on mutations

inferredcites →https://doi.org/10.1093/nar/gkw1000openalex-snapshot

OUP accepted manuscript

inferredcites →https://doi.org/10.1093/nar/gkw315openalex-snapshot

The RING 2.0 web server for high quality residue interaction networks

inferredcites →https://doi.org/10.1093/procel/pwae007openalex-snapshot

Mutations in the SARS-CoV-2 spike receptor binding domain and their delicate balance between ACE2 affinity and antibody evasion

inferredcites →https://doi.org/10.1093/ve/veae067openalex-snapshot

Deep mutational scanning of SARS-CoV-2 Omicron BA.2.86 and epistatic emergence of the KP.3 variant

inferredcites →https://doi.org/10.1101/2022.02.07.479349openalex-snapshot

Omicron BA.2 specifically evades broad sarbecovirus neutralizing antibodies

inferredcites →https://doi.org/10.1101/2025.06.20.660748openalex-snapshot

The evolution of allostery in a protein family

inferredcites →https://doi.org/10.1103/physreva.31.1695openalex-snapshot

Canonical dynamics: Equilibrium phase-space distributions

inferredcites →https://doi.org/10.1111/1348-0421.13165openalex-snapshot

Virological characteristics of the SARS‐CoV‐2 Omicron EG.5.1 variant

inferredcites →https://doi.org/10.1126/sciadv.abe5575openalex-snapshot

Conformational dynamics of SARS-CoV-2 trimeric spike glycoprotein in complex with receptor ACE2 revealed by cryo-EM

inferredcites →https://doi.org/10.1126/science.abb2507openalex-snapshot

Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation

inferredcites →https://doi.org/10.1126/science.abb7269openalex-snapshot

A highly conserved cryptic epitope in the receptor binding domains of SARS-CoV-2 and SARS-CoV

inferredcites →https://doi.org/10.1126/science.abd0826openalex-snapshot

Structure-based design of prefusion-stabilized SARS-CoV-2 spikes

inferredcites →https://doi.org/10.1126/science.abd4251openalex-snapshot

Distinct conformational states of SARS-CoV-2 spike protein

inferredcites →https://doi.org/10.1126/science.abd5223openalex-snapshot

In situ structural analysis of SARS-CoV-2 spike reveals flexibility mediated by three hinges

inferredcites →https://doi.org/10.1126/science.abe3354openalex-snapshot

Ultrapotent human antibodies protect against SARS-CoV-2 challenge via multiple mechanisms

inferredcites →https://doi.org/10.1126/science.abf4830openalex-snapshot

Broad and potent activity against SARS-like viruses by an engineered human monoclonal antibody

inferredcites →https://doi.org/10.1126/science.abg4493openalex-snapshot

The emerging plasticity of SARS-CoV-2

inferredcites →https://doi.org/10.1126/science.abn7760openalex-snapshot

SARS-CoV-2 Omicron variant: Antibody evasion and cryo-EM structure of spike protein–ACE2 complex

inferredcites →https://doi.org/10.1126/science.abn8652openalex-snapshot

Structural basis of SARS-CoV-2 Omicron immune evasion and receptor engagement

inferredcites →https://doi.org/10.1126/science.abn8863openalex-snapshot

Structures of the Omicron spike trimer with ACE2 and an anti-Omicron antibody

inferredcites →https://doi.org/10.1126/scitranslmed.abj7125openalex-snapshot

A broadly cross-reactive antibody neutralizes and protects against sarbecovirus challenge in mice

inferredcites →https://doi.org/10.1126/scitranslmed.adg7404openalex-snapshot

Broadly neutralizing antibodies against sarbecoviruses generated by immunization of macaques with an AS03-adjuvanted COVID-19 vaccine

inferredcites →https://doi.org/10.1128/jvi.01596-22openalex-snapshot

Targeting the Spike Receptor Binding Domain Class V Cryptic Epitope by an Antibody with Pan-Sarbecovirus Activity

inferredcites →https://doi.org/10.1128/mbio.03220-23openalex-snapshot

Molecular and structural insights into SARS-CoV-2 evolution: from BA.2 to XBB subvariants

inferredcites →https://doi.org/10.1128/mbio.03227-21openalex-snapshot

SARS-CoV-2 Variants Increase Kinetic Stability of Open Spike Conformations as an Evolutionary Strategy

inferredcites →https://doi.org/10.1145/367766.368168openalex-snapshot

Algorithm 97: Shortest path

inferredcites →https://doi.org/10.1146/annurev.biophys.29.1.291openalex-snapshot

Comparative Protein Structure Modeling of Genes and Genomes

inferredcites →https://doi.org/10.12659/msm.939580openalex-snapshot

Editorial: The XBB.1.5 (‘Kraken’) Subvariant of Omicron SARS-CoV-2 and its Rapid Global Spread

inferredcites →https://doi.org/10.1529/biophysj.105.064485openalex-snapshot

A Network Representation of Protein Structures: Implications for Protein Stability

inferredcites →https://doi.org/10.1529/biophysj.105.079434openalex-snapshot

A New Generation of Statistical Potentials for Proteins

inferredcites →https://doi.org/10.25080/tcwv9851openalex-snapshot

Exploring Network Structure, Dynamics, and Function using NetworkX

inferredcites →https://doi.org/10.3390/biom12070964openalex-snapshot

Integrating Conformational Dynamics and Perturbation-Based Network Modeling for Mutational Profiling of Binding and Allostery in the SARS-CoV-2 Spike Variant Complexes with Antibodies: Balancing Local and Global Determinants of Mutational Escape Mechanisms

inferredcites →https://doi.org/10.3390/biom15020249openalex-snapshot

Quantitative Characterization and Prediction of the Binding Determinants and Immune Escape Hotspots for Groups of Broadly Neutralizing Antibodies Against Omicron Variants: Atomistic Modeling of the SARS-CoV-2 Spike Complexes with Antibodies

inferredcites →https://doi.org/10.3390/genes16010101openalex-snapshot

Further Development of SAMPDI-3D: A Machine Learning Method for Predicting Binding Free Energy Changes Caused by Mutations in Either Protein or DNA

inferredcites →https://doi.org/10.3390/ijms19113496openalex-snapshot

Modeling of Protein Structural Flexibility and Large-Scale Dynamics: Coarse-Grained Simulations and Elastic Network Models

inferredcites →https://doi.org/10.3390/ijms20030606openalex-snapshot

Modeling of Disordered Protein Structures Using Monte Carlo Simulations and Knowledge-Based Statistical Force Fields

inferredcites →https://doi.org/10.3390/ijms21072563openalex-snapshot

SAAMBE-3D: Predicting Effect of Mutations on Protein–Protein Interactions

inferredcites →https://doi.org/10.3390/ijms25084281openalex-snapshot

Ensemble-Based Mutational Profiling and Network Analysis of the SARS-CoV-2 Spike Omicron XBB Lineages for Interactions with the ACE2 Receptor and Antibodies: Cooperation of Binding Hotspots in Mediating Epistatic Couplings Underlies Binding Mechanism and Immune Escape

inferredcites →https://doi.org/10.3390/v14061255openalex-snapshot

Structural Plasticity and Immune Evasion of SARS-CoV-2 Spike Variants

inferredcites →https://doi.org/10.3390/v15051143openalex-snapshot

Balancing Functional Tradeoffs between Protein Stability and ACE2 Binding in the SARS-CoV-2 Omicron BA.2, BA.2.75 and XBB Lineages: Dynamics-Based Network Models Reveal Epistatic Effects Modulating Compensatory Dynamic and Energetic Changes

inferredcites →https://doi.org/10.3390/v16091458openalex-snapshot

AlphaFold2 Modeling and Molecular Dynamics Simulations of the Conformational Ensembles for the SARS-CoV-2 Spike Omicron JN.1, KP.2 and KP.3 Variants: Mutational Profiling of Binding Energetics Reveals Epistatic Drivers of the ACE2 Affinity and Escape Hotspots of Antibody Resistance

inferredcites →https://doi.org/10.3390/v17060741openalex-snapshot

Integrative Computational Modeling of Distinct Binding Mechanisms for Broadly Neutralizing Antibodies Targeting SARS-CoV-2 Spike Omicron Variants: Balance of Evolutionary and Dynamic Adaptability in Shaping Molecular Determinants of Immune Escape

inferredcites →https://doi.org/10.7554/elife.75433openalex-snapshot

Conformational dynamics and allosteric modulation of the SARS-CoV-2 spike

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.