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Real-Time Conformational Dynamics of SARS-CoV-2 Spikes on Virus Particles

https://doi.org/10.1016/j.chom.2020.11.001

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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inferredcites →https://doi.org/10.1016/j.jsb.2005.07.007openalex-snapshot

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inferredcites →https://doi.org/10.1016/j.jsb.2016.06.007openalex-snapshot

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inferred← citeshttps://doi.org/10.1021/acscentsci.3c00810openalex-snapshot

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inferred← citeshttps://doi.org/10.1021/acsinfecdis.3c00010openalex-snapshot

hACE2-Induced Allosteric Activation in SARS-CoV versus SARS-CoV-2 Spike Assemblies Revealed by Structural Dynamics

inferred← citeshttps://doi.org/10.1021/acsomega.1c02336openalex-snapshot

Landscape-Based Mutational Sensitivity Cartography and Network Community Analysis of the SARS-CoV-2 Spike Protein Structures: Quantifying Functional Effects of the Circulating D614G Variant

inferred← citeshttps://doi.org/10.1021/acsomega.1c03558openalex-snapshot

Atomistic Simulations and In Silico Mutational Profiling of Protein Stability and Binding in the SARS-CoV-2 Spike Protein Complexes with Nanobodies: Molecular Determinants of Mutational Escape Mechanisms

inferred← citeshttps://doi.org/10.1021/acsomega.5c10442openalex-snapshot

A Tetrapodal Tryptophan Derivative with Multiple Exposed Free Carboxylic Acids Blocks Host Cell Entry of Omicron SARS-Cov-2 and Respiratory Syncytial Virus

inferred← citeshttps://doi.org/10.1021/jacs.1c00556openalex-snapshot

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inferred← citeshttps://doi.org/10.1021/jacs.1c07965openalex-snapshot

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inferred← citeshttps://doi.org/10.1038/s41467-021-23494-1openalex-snapshot

SARS-CoV-2 RNAemia and proteomic trajectories inform prognostication in COVID-19 patients admitted to intensive care

inferred← citeshttps://doi.org/10.1038/s41467-021-24963-3openalex-snapshot

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inferred← citeshttps://doi.org/10.1038/s41467-022-28654-5openalex-snapshot

Cooperative multivalent receptor binding promotes exposure of the SARS-CoV-2 fusion machinery core

inferred← citeshttps://doi.org/10.1038/s41467-022-32496-6openalex-snapshot

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inferred← citeshttps://doi.org/10.1038/s41467-023-36745-0openalex-snapshot

Structural dynamics in the evolution of SARS-CoV-2 spike glycoprotein

inferred← citeshttps://doi.org/10.1038/s41467-023-37290-6openalex-snapshot

Intranasal trimeric sherpabody inhibits SARS-CoV-2 including recent immunoevasive Omicron subvariants

inferred← citeshttps://doi.org/10.1038/s41467-023-38251-9openalex-snapshot

Detergent modulates the conformational equilibrium of SARS-CoV-2 Spike during cryo-EM structural determination

inferred← citeshttps://doi.org/10.1038/s41467-024-50976-9openalex-snapshot

Simulation-driven design of stabilized SARS-CoV-2 spike S2 immunogens

inferred← citeshttps://doi.org/10.1038/s41467-025-65099-yopenalex-snapshot

Spike conformational and glycan heterogeneity associated with furin cleavage causes incomplete neutralization of SARS-CoV-2

inferred← citeshttps://doi.org/10.1038/s41557-021-00707-0openalex-snapshot

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inferred← citeshttps://doi.org/10.1038/s41557-021-00758-3openalex-snapshot

A glycan gate controls opening of the SARS-CoV-2 spike protein

inferred← citeshttps://doi.org/10.1038/s41565-025-01908-1openalex-snapshot

Modulation of SARS-CoV-2 spike binding to ACE2 through conformational selection

inferred← citeshttps://doi.org/10.1038/s41594-022-00735-5openalex-snapshot

The SARS-CoV-2 spike reversibly samples an open-trimer conformation exposing novel epitopes

inferred← citeshttps://doi.org/10.1038/s41598-022-14263-1openalex-snapshot

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inferred← citeshttps://doi.org/10.1038/s41598-025-85153-5openalex-snapshot

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inferred← citeshttps://doi.org/10.1038/s42003-022-04138-6openalex-snapshot

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inferred← citeshttps://doi.org/10.1038/s42003-024-07422-9openalex-snapshot

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inferred← citeshttps://doi.org/10.1039/d1cs01170gopenalex-snapshot

Interaction of SARS-CoV-2 with host cells and antibodies: experiment and simulation

inferred← citeshttps://doi.org/10.1039/d2cp01893dopenalex-snapshot

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inferred← citeshttps://doi.org/10.1039/d2sc06967aopenalex-snapshot

The ACE2 receptor accelerates but is not biochemically required for SARS-CoV-2 membrane fusion

inferred← citeshttps://doi.org/10.1039/d3cp02042hopenalex-snapshot

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inferred← citeshttps://doi.org/10.1039/d4cp01372gopenalex-snapshot

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inferred← citeshttps://doi.org/10.1039/d4sc04364bopenalex-snapshot

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inferred← citeshttps://doi.org/10.1039/d5cp02468dopenalex-snapshot

Dynamic mutational profiling of binding interactions and allosteric networks in conformational ensembles of the SARS-CoV-2 spike protein complexes with classes of antibodies targeting cryptic binding sites: confluence of binding and allostery determines molecular mechanisms and hotspots of immune…

inferred← citeshttps://doi.org/10.1039/d5cp04391copenalex-snapshot

Evolutionary aspect of spike glycoprotein's conformational dynamics

inferred← citeshttps://doi.org/10.1039/d6cp02673gopenalex-snapshot

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inferred← citeshttps://doi.org/10.1073/pnas.2114397119openalex-snapshot

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inferred← citeshttps://doi.org/10.1073/pnas.2504793123openalex-snapshot

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inferred← citeshttps://doi.org/10.1080/07391102.2021.1933594openalex-snapshot

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inferred← citeshttps://doi.org/10.1097/jcma.0000000000000574openalex-snapshot

Development and optimization of heavy metal lead biosensors in biomedical and environmental applications

inferred← citeshttps://doi.org/10.1101/2020.12.25.424008openalex-snapshot

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inferred← citeshttps://doi.org/10.1101/2021.03.18.435972openalex-snapshot

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inferred← citeshttps://doi.org/10.1101/2021.05.06.441046openalex-snapshot

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inferred← citeshttps://doi.org/10.1101/2021.05.24.445443openalex-snapshot

Cooperative multivalent receptor binding promotes exposure of the SARS-CoV-2 fusion machinery core

inferred← citeshttps://doi.org/10.1101/2021.08.08.455468openalex-snapshot

A Tethered Ligand Assay to Probe SARS-CoV-2:ACE2 Interactions

inferred← citeshttps://doi.org/10.1101/2021.09.08.459408openalex-snapshot

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inferred← citeshttps://doi.org/10.1101/2021.10.11.463956openalex-snapshot

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inferred← citeshttps://doi.org/10.1101/2021.10.29.466470openalex-snapshot

Conformational dynamics and allosteric modulation of the SARS-CoV-2 spike

inferred← citeshttps://doi.org/10.1101/2021.12.09.471953openalex-snapshot

The Landscape-Based Protein Stability Analysis and Network Modeling of Multiple Conformational States of the SARS-CoV-2 Spike D614 Mutant: Conformational Plasticity and Frustration-Driven Allostery as Energetic Drivers of Highly Transmissible Spike Variant

inferred← citeshttps://doi.org/10.1101/2022.04.11.487920openalex-snapshot

Hierarchical Computational Modeling and Dynamic Network Analysis of Allosteric Regulation in the SARS-CoV-2 Spike Omicron Trimer Structures: Omicron Mutations Cooperate to Allosterically Control Balance of Protein Stability and Conformational Adaptability

inferred← citeshttps://doi.org/10.1101/2022.04.20.488873openalex-snapshot

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inferred← citeshttps://doi.org/10.1101/2022.09.05.506698openalex-snapshot

Atomistic Simulations and Network-Based Energetic Profiling of Binding and Allostery in the SARS-CoV-2 Spike Omicron BA.1, BA.1.1, BA.2 and BA.3 Subvariant Complexes with the Host Receptor: Revealing Hidden Functional Roles of the Binding Hotspots in Mediating Epistatic Effects and Long-Range…

inferred← citeshttps://doi.org/10.1101/2022.11.29.518406openalex-snapshot

Atomic-level characterization of the conformational transition pathways in SARS-CoV-1 and SARS-CoV-2 spike proteins

inferred← citeshttps://doi.org/10.1101/2023.02.28.530526openalex-snapshot

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inferred← citeshttps://doi.org/10.1101/2023.08.21.554193openalex-snapshot

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inferred← citeshttps://doi.org/10.1101/2023.09.11.557205openalex-snapshot

Examining Functional Linkages Between Conformational Dynamics, Protein Stability and Evolution of Cryptic Binding Pockets in the SARS-CoV-2 Omicron Spike Complexes with the ACE2 Host Receptor: Recombinant Omicron Variants Mediate Variability of Conserved Allosteric Sites and Binding Epitopes

inferred← citeshttps://doi.org/10.1101/2023.11.18.567697openalex-snapshot

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inferred← citeshttps://doi.org/10.1101/2023.12.11.571185openalex-snapshot

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inferred← citeshttps://doi.org/10.1101/2024.04.02.587850openalex-snapshot

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inferred← citeshttps://doi.org/10.1101/2024.07.09.602810openalex-snapshot

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inferred← citeshttps://doi.org/10.1101/2024.08.21.608921openalex-snapshot

Fc-independent SARS-CoV-2 infection-enhancing antibodies decouple N-terminal and receptor-binding domains by cross-linking neighboring spikes

inferred← citeshttps://doi.org/10.1101/2025.01.27.635166openalex-snapshot

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inferred← citeshttps://doi.org/10.1101/2025.04.11.648405openalex-snapshot

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inferred← citeshttps://doi.org/10.1101/2025.04.15.649027openalex-snapshot

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inferred← citeshttps://doi.org/10.1101/2025.06.07.658468openalex-snapshot

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inferred← citeshttps://doi.org/10.1101/2025.06.28.662162openalex-snapshot

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inferred← citeshttps://doi.org/10.1101/2025.07.10.664240openalex-snapshot

Deciphering the Mechanistic Continuum of Broadly Neutralizing Class 4 Antibodies Targeting Conserved Cryptic Epitopes of the SARS-CoV-2 Spike Protein : Operating at the Intersection of Binding, Allostery and Immune Escape

inferred← citeshttps://doi.org/10.1101/2025.10.31.685956openalex-snapshot

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inferred← citeshttps://doi.org/10.1101/2025.11.02.686173openalex-snapshot

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inferred← citeshttps://doi.org/10.1101/2025.11.17.688702openalex-snapshot

pH-induced structural changes in SARS-CoV-2 spike variants

inferred← citeshttps://doi.org/10.1126/sciadv.adk4920openalex-snapshot

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inferred← citeshttps://doi.org/10.1126/sciadv.adx5178openalex-snapshot

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inferred← citeshttps://doi.org/10.1126/science.abj8430openalex-snapshot

Replication and single-cycle delivery of SARS-CoV-2 replicons

inferred← citeshttps://doi.org/10.1126/science.adn5658openalex-snapshot

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inferred← citeshttps://doi.org/10.1128/jvi.01626-21openalex-snapshot

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inferred← citeshttps://doi.org/10.1128/mbio.00171-23openalex-snapshot

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inferred← citeshttps://doi.org/10.1128/mbio.00907-24openalex-snapshot

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inferred← citeshttps://doi.org/10.1128/mbio.01590-21openalex-snapshot

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inferred← citeshttps://doi.org/10.1128/mbio.02687-21openalex-snapshot

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inferred← citeshttps://doi.org/10.1128/mbio.03227-21openalex-snapshot

SARS-CoV-2 Variants Increase Kinetic Stability of Open Spike Conformations as an Evolutionary Strategy

inferred← citeshttps://doi.org/10.1128/spectrum.00886-21openalex-snapshot

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Human interaction targets of SARS-CoV-2 spike protein: A systematic review

inferred← citeshttps://doi.org/10.1177/1721727x221125436openalex-snapshot

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inferred← citeshttps://doi.org/10.1186/s12977-024-00649-8openalex-snapshot

The KT Jeang retrovirology prize 2024: Walther Mothes

inferred← citeshttps://doi.org/10.1371/journal.ppat.1012757openalex-snapshot

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inferred← citeshttps://doi.org/10.1371/journal.ppat.1013317openalex-snapshot

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inferred← citeshttps://doi.org/10.1515/gps-2022-0018openalex-snapshot

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inferred← citeshttps://doi.org/10.15212/amm-2024-0047openalex-snapshot

AF2-mutation: adversarial sequence mutations against AlphaFold2 in protein tertiary structure prediction

inferred← citeshttps://doi.org/10.20350/digitalcsic/13971openalex-snapshot

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inferred← citeshttps://doi.org/10.21203/rs.3.rs-2049401/v1openalex-snapshot

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inferred← citeshttps://doi.org/10.2147/idr.s308176openalex-snapshot

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Anti-Fungal Drug Anidulafungin Inhibits SARS-CoV-2 Spike-Induced Syncytia Formation by Targeting ACE2-Spike Protein Interaction

inferred← citeshttps://doi.org/10.3389/fimmu.2021.796855openalex-snapshot

Cholesterol-Rich Lipid Rafts as Platforms for SARS-CoV-2 Entry

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inferred← citeshttps://doi.org/10.3389/fmolb.2021.713003openalex-snapshot

DNA Aptamers Block the Receptor Binding Domain at the Spike Protein of SARS-CoV-2

inferred← citeshttps://doi.org/10.3389/fpubh.2022.842303openalex-snapshot

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inferred← citeshttps://doi.org/10.3390/biom14030282openalex-snapshot

N-Glycosylation as a Modulator of Protein Conformation and Assembly in Disease

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inferred← citeshttps://doi.org/10.3390/biom15091340openalex-snapshot

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inferred← citeshttps://doi.org/10.3390/ijms23042078openalex-snapshot

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inferred← citeshttps://doi.org/10.3390/ijms231911542openalex-snapshot

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inferred← citeshttps://doi.org/10.3390/ijms24076642openalex-snapshot

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inferred← citeshttps://doi.org/10.3390/ijms25084281openalex-snapshot

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inferred← citeshttps://doi.org/10.3390/ijms25094955openalex-snapshot

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inferred← citeshttps://doi.org/10.3390/ijms26041507openalex-snapshot

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inferred← citeshttps://doi.org/10.3390/ijms27094025openalex-snapshot

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inferred← citeshttps://doi.org/10.3390/ma13235362openalex-snapshot

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inferred← citeshttps://doi.org/10.3390/v14102178openalex-snapshot

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inferred← citeshttps://doi.org/10.3390/v15102009openalex-snapshot

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inferred← citeshttps://doi.org/10.3390/v15102073openalex-snapshot

Comparative Analysis of Conformational Dynamics and Systematic Characterization of Cryptic Pockets in the SARS-CoV-2 Omicron BA.2, BA.2.75 and XBB.1 Spike Complexes with the ACE2 Host Receptor: Confluence of Binding and Structural Plasticity in Mediating Networks of Conserved Allosteric Sites

inferred← citeshttps://doi.org/10.3390/v16030391openalex-snapshot

Differentiating Cell Entry Potentials of SARS-CoV-2 Omicron Subvariants on Human Lung Epithelium Cells

inferred← citeshttps://doi.org/10.3390/v16030407openalex-snapshot

Discordant Antigenic Properties of Soluble and Virion SARS-CoV-2 Spike Proteins

inferred← citeshttps://doi.org/10.3390/v16071066openalex-snapshot

Assessing pH-Dependent Conformational Changes in the Fusion Peptide Proximal Region of the SARS-CoV-2 Spike Glycoprotein

inferred← citeshttps://doi.org/10.3390/v16091458openalex-snapshot

AlphaFold2 Modeling and Molecular Dynamics Simulations of the Conformational Ensembles for the SARS-CoV-2 Spike Omicron JN.1, KP.2 and KP.3 Variants: Mutational Profiling of Binding Energetics Reveals Epistatic Drivers of the ACE2 Affinity and Escape Hotspots of Antibody Resistance

inferred← citeshttps://doi.org/10.3390/v17060741openalex-snapshot

Integrative Computational Modeling of Distinct Binding Mechanisms for Broadly Neutralizing Antibodies Targeting SARS-CoV-2 Spike Omicron Variants: Balance of Evolutionary and Dynamic Adaptability in Shaping Molecular Determinants of Immune Escape

inferred← citeshttps://doi.org/10.3390/v17081029openalex-snapshot

Multiscale Modeling and Dynamic Mutational Profiling of Binding Energetics and Immune Escape for Class I Antibodies with SARS-CoV-2 Spike Protein: Dissecting Mechanisms of High Resistance to Viral Escape Against Emerging Variants

inferred← citeshttps://doi.org/10.3390/vaccines12080914openalex-snapshot

Novel Competitive ELISA Utilizing Trimeric Spike Protein of SARS-CoV-2, Could Identify More Than RBD-RBM Specific Neutralizing Antibodies in Hybrid Sera

inferred← citeshttps://doi.org/10.37349/ei.2021.00014openalex-snapshot

The protective immunity induced by SARS-CoV-2 infection and vaccination: a critical appraisal

inferred← citeshttps://doi.org/10.51167/acm00050openalex-snapshot

Attachment of Virus to Host Cell Surface upon Specific Binding to Membrane Receptors and Attachment Factors

inferred← citeshttps://doi.org/10.64898/2026.04.02.716254openalex-snapshot

Frustration Landscapes of Broadly Neutralizing SARS-CoV-2 Spike Antibodies Targeting Conserved Epitopes Reveal Energetic Logic of Escape-Proof and Escape-Prone Mechanisms

inferred← citeshttps://doi.org/10.64898/2026.09.14.750718openalex-snapshot

Peptide inhibitors recognize prefusion viral fusion proteins with heterogeneous stoichiometry and rapid kinetics

inferred← citeshttps://doi.org/10.7554/elife.110887openalex-snapshot

Distinct allosteric remodeling of HIV-1 Env dynamics on virions by gp41-directed antibodies reveals two modes of neutralization

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