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Integrating single-cell RNA-Seq with spatial transcriptomics in pancreatic ductal adenocarcinoma using multimodal intersection analysis
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Histology of the exocrine pancreas
inferredcites →https://doi.org/10.1007/s10479-011-0841-3openalex-snapshot
Multiobjective evolutionary algorithms to identify highly autocorrelated areas: the case of spatial distribution in financially compromised farms
inferredcites →https://doi.org/10.1016/j.cell.2014.09.038openalex-snapshot
Genome-wide RNA Tomography in the Zebrafish Embryo
inferredcites →https://doi.org/10.1016/j.cell.2017.05.035openalex-snapshot
Landscape of Infiltrating T Cells in Liver Cancer Revealed by Single-Cell Sequencing
inferredcites →https://doi.org/10.1016/j.celrep.2017.10.030openalex-snapshot
Single-Cell RNA-Seq Analysis of Infiltrating Neoplastic Cells at the Migrating Front of Human Glioblastoma
inferredcites →https://doi.org/10.1016/j.cels.2016.08.011openalex-snapshot
A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure
inferredcites →https://doi.org/10.1016/j.molcel.2015.04.005openalex-snapshot
The Technology and Biology of Single-Cell RNA Sequencing
inferredcites →https://doi.org/10.1016/j.molcel.2017.01.023openalex-snapshot
Comparative Analysis of Single-Cell RNA Sequencing Methods
inferredcites →https://doi.org/10.1016/j.molmed.2017.04.006openalex-snapshot
Single-Cell RNA Sequencing: Unraveling the Brain One Cell at a Time
inferredcites →https://doi.org/10.1016/j.neuron.2016.10.001openalex-snapshot
In Situ Transcription Profiling of Single Cells Reveals Spatial Organization of Cells in the Mouse Hippocampus
inferredcites →https://doi.org/10.1038/icb.2017.18openalex-snapshot
MS4A4A: a novel cell surface marker for M2 macrophages and plasma cells
inferredcites →https://doi.org/10.1038/nature20123openalex-snapshot
Single-cell RNA-seq supports a developmental hierarchy in human oligodendroglioma
inferredcites →https://doi.org/10.1038/nbt.3192openalex-snapshot
Spatial reconstruction of single-cell gene expression data
inferredcites →https://doi.org/10.1038/nbt.3209openalex-snapshot
High-throughput spatial mapping of single-cell RNA-seq data to tissue of origin
inferredcites →https://doi.org/10.1038/nbt.4096openalex-snapshot
Integrating single-cell transcriptomic data across different conditions, technologies, and species
inferredcites →https://doi.org/10.1038/ncomms12139openalex-snapshot
Laser capture microscopy coupled with Smart-seq2 for precise spatial transcriptomic profiling
inferredcites →https://doi.org/10.1038/ncomms15081openalex-snapshot
Single-cell RNA-seq enables comprehensive tumour and immune cell profiling in primary breast cancer
inferredcites →https://doi.org/10.1038/ng.3818openalex-snapshot
Reference component analysis of single-cell transcriptomes elucidates cellular heterogeneity in human colorectal tumors
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/nmeth.2804openalex-snapshot
Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue
inferredcites →https://doi.org/10.1038/nmeth.4309openalex-snapshot
Quantitative mRNA imaging throughout the entire Drosophila brain
inferredcites →https://doi.org/10.1038/nplants.2017.61openalex-snapshot
Spatially resolved transcriptome profiling in model plant species
inferredcites →https://doi.org/10.1038/nprot.2014.191openalex-snapshot
Fluorescent in situ sequencing (FISSEQ) of RNA for gene expression profiling in intact cells and tissues
inferredcites →https://doi.org/10.1038/nprot.2017.003openalex-snapshot
Spatial transcriptomic analysis of cryosectioned tissue samples with Geo-seq
inferredcites →https://doi.org/10.1038/nrclinonc.2014.170openalex-snapshot
A decade of discovery in cancer genomics
inferredcites →https://doi.org/10.1038/nri.2017.76openalex-snapshot
Single-cell RNA sequencing to explore immune cell heterogeneity
inferredcites →https://doi.org/10.1038/s41467-018-04724-5openalex-snapshot
Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity
inferredcites →https://doi.org/10.1038/s41598-017-13462-5openalex-snapshot
Spatial detection of fetal marker genes expressed at low level in adult human heart tissue
inferredcites →https://doi.org/10.1038/s41598-018-27627-3openalex-snapshot
Gene expression profiling of periodontitis-affected gingival tissue by spatial transcriptomics
inferredcites →https://doi.org/10.1038/sj.onc.1208325openalex-snapshot
Ero1-Lα plays a key role in a HIF-1-mediated pathway to improve disulfide bond formation and VEGF secretion under hypoxia: implication for cancer
inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot
STAR: ultrafast universal RNA-seq aligner
inferredcites →https://doi.org/10.1093/bioinformatics/btu638openalex-snapshot
HTSeq—a Python framework to work with high-throughput sequencing data
inferredcites →https://doi.org/10.1093/jmcb/mjaa028openalex-snapshot
Transcriptional output, cell-type densities, and normalization in spatial transcriptomics
inferredcites →https://doi.org/10.1101/217737openalex-snapshot
K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data
inferredcites →https://doi.org/10.1126/science.1250212openalex-snapshot
Highly Multiplexed Subcellular RNA Sequencing in Situ
inferredcites →https://doi.org/10.1126/science.1254257openalex-snapshot
Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma
inferredcites →https://doi.org/10.1126/science.aaa6090openalex-snapshot
Spatially resolved, highly multiplexed RNA profiling in single cells
inferredcites →https://doi.org/10.1126/science.aad0501openalex-snapshot
Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq
inferredcites →https://doi.org/10.1126/science.aaf2403openalex-snapshot
Visualization and analysis of gene expression in tissue sections by spatial transcriptomics
inferredcites →https://doi.org/10.1126/science.aai8478openalex-snapshot
Decoupling genetics, lineages, and microenvironment in IDH-mutant gliomas by single-cell RNA-seq
inferredcites →https://doi.org/10.1126/science.aav9776openalex-snapshot
Spatiotemporal dynamics of molecular pathology in amyotrophic lateral sclerosis
inferredcites →https://doi.org/10.1155/2015/816460openalex-snapshot
Understanding the Mysterious M2 Macrophage through Activation Markers and Effector Mechanisms
inferredcites →https://doi.org/10.1158/0008-5472.can-17-1924openalex-snapshot
Single-Cell RNA-seq Reveals a Subpopulation of Prostate Cancer Cells with Enhanced Cell-Cycle–Related Transcription and Attenuated Androgen Response
inferredcites →https://doi.org/10.1158/0008-5472.can-18-0747openalex-snapshot
Spatially Resolved Transcriptomics Enables Dissection of Genetic Heterogeneity in Stage III Cutaneous Malignant Melanoma
inferredcites →https://doi.org/10.1182/blood-2007-02-072587openalex-snapshot
Tumor-associated leukemia inhibitory factor and IL-6 skew monocyte differentiation into tumor-associated macrophage-like cells
inferredcites →https://doi.org/10.1186/s13059-016-0938-8openalex-snapshot
CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq
inferredcites →https://doi.org/10.18632/oncotarget.15630openalex-snapshot
CD163 as a marker of M2 macrophage, contribute to predict aggressiveness and prognosis of Kazakh esophageal squamous cell carcinoma
inferredcites →https://doi.org/10.3389/fimmu.2018.00635openalex-snapshot
The Contribution of Non-Professional Antigen-Presenting Cells to Immunity and Tolerance in the Liver
inferredcites →https://doi.org/10.3389/fimmu.2018.02144openalex-snapshot
Epithelial MHC Class II Expression and Its Role in Antigen Presentation in the Gastrointestinal and Respiratory Tracts
inferredcites →https://doi.org/10.3389/fphys.2013.00400openalex-snapshot
Carbonic anhydrase IX, a hypoxia-induced catalytic component of the pH regulating machinery in tumors
inferredcites →https://doi.org/10.3390/cancers7040902openalex-snapshot
Cancer-Associated Fibroblasts: Their Characteristics and Their Roles in Tumor Growth
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1002/9781119060208.ch4openalex-snapshot
Signal Transduction in Disease
inferred← citeshttps://doi.org/10.1002/cnr2.1192openalex-snapshot
Frontiers in intravital multiphoton microscopy of cancer
inferred← citeshttps://doi.org/10.1007/978-981-15-4494-1_12openalex-snapshot
Application of Single-Cell RNA Sequencing in Pancreatic Cancer and the Endocrine Pancreas
inferred← citeshttps://doi.org/10.1016/j.advms.2019.12.001openalex-snapshot
Single-cell analysis on stromal fibroblasts in the microenvironment of solid tumours
inferred← citeshttps://doi.org/10.1016/j.bbagrm.2019.194445openalex-snapshot
Identification of non-cancer cells from cancer transcriptomic data
inferred← citeshttps://doi.org/10.1016/j.cell.2018.08.063openalex-snapshot
Spatial Reconstruction of Single Enterocytes Uncovers Broad Zonation along the Intestinal Villus Axis
inferred← citeshttps://doi.org/10.1016/j.cels.2019.07.003openalex-snapshot
Systems Biology of Cancer Metastasis
inferred← citeshttps://doi.org/10.1016/j.kint.2021.01.015openalex-snapshot
AI applications in renal pathology
inferred← citeshttps://doi.org/10.1038/s41380-021-01046-9openalex-snapshot
Single molecule in situ hybridization reveals distinct localizations of schizophrenia risk-related transcripts SNX19 and AS3MT in human brain
inferred← citeshttps://doi.org/10.1038/s41576-018-0088-9openalex-snapshot
Challenges in unsupervised clustering of single-cell RNA-seq data
inferred← citeshttps://doi.org/10.1038/s41576-019-0150-2openalex-snapshot
RNA sequencing: the teenage years
inferred← citeshttps://doi.org/10.1038/s41593-020-00787-0openalex-snapshot
Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex
inferred← citeshttps://doi.org/10.1038/s41598-020-60384-wopenalex-snapshot
Spatial modeling of prostate cancer metabolic gene expression reveals extensive heterogeneity and selective vulnerabilities
inferred← citeshttps://doi.org/10.1042/bcj20190341openalex-snapshot
Cell Atlas technologies and insights into tissue architecture
inferred← citeshttps://doi.org/10.1093/biolre/ioz099openalex-snapshot
Ovarian cancer and the evolution of subtype classifications using transcriptional profiling†
inferred← citeshttps://doi.org/10.1093/nar/gkaa312openalex-snapshot
dotdotdot: an automated approach to quantify multiplex single molecule fluorescent in situ hybridization (smFISH) images in complex tissues
inferred← citeshttps://doi.org/10.1093/nar/gkab043openalex-snapshot
SPOTlight: seeded NMF regression to deconvolute spatial transcriptomics spots with single-cell transcriptomes
inferred← citeshttps://doi.org/10.1101/2020.03.27.001834openalex-snapshot
Online narrative guides for illuminating tissue atlas data and digital pathology images
inferred← citeshttps://doi.org/10.1101/2021.06.23.449615openalex-snapshot
A Bayesian Multivariate Mixture Model for Spatial Transcriptomics Data
inferred← citeshttps://doi.org/10.1101/311472openalex-snapshot
pheno-seq – linking morphological features to gene expression in 3D cell culture systems
inferred← citeshttps://doi.org/10.1101/719294openalex-snapshot
Spatial modeling of prostate cancer metabolic gene expression reveals extensive heterogeneity and selective vulnerabilities
inferred← citeshttps://doi.org/10.1101/759118openalex-snapshot
Single-cell transcriptomic landscape of cardiac neural crest cell derivatives during embryonic and neonatal development
inferred← citeshttps://doi.org/10.1111/biom.13727openalex-snapshot
A Bayesian Multivariate Mixture Model for High Throughput Spatial Transcriptomics
inferred← citeshttps://doi.org/10.1111/febs.14435openalex-snapshot
Placing RNA in context and space – methods for spatially resolved transcriptomics
inferred← citeshttps://doi.org/10.1136/jitc-2019-000363openalex-snapshot
High-dimensional immune-profiling in cancer: implications for immunotherapy
inferred← citeshttps://doi.org/10.1158/2326-6066.cir-18-0281openalex-snapshot
Revolutionizing Cancer Immunology: The Power of Next-Generation Sequencing Technologies
inferred← citeshttps://doi.org/10.1186/s13059-020-02132-xopenalex-snapshot
A systematic evaluation of single-cell RNA-sequencing imputation methods
inferred← citeshttps://doi.org/10.1515/sagmb-2020-0075openalex-snapshot
Measuring evolutionary cancer dynamics from genome sequencing, one patient at a time
inferred← citeshttps://doi.org/10.15252/msb.20209682openalex-snapshot
A single cell atlas of the human liver tumor microenvironment
inferred← citeshttps://doi.org/10.3389/fonc.2020.00423openalex-snapshot
Computational Oncology in the Multi-Omics Era: State of the Art
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