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The Juicebox Assembly Tools module facilitates de novo assembly of mammalian genomes with chromosome-length scaffolds for under $1000
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1016/j.cell.2014.11.021openalex-snapshot
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
inferredcites →https://doi.org/10.1016/j.cels.2015.07.012openalex-snapshot
Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom
inferredcites →https://doi.org/10.1016/j.cels.2016.07.002openalex-snapshot
Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
inferredcites →https://doi.org/10.1017/s0031182017001329openalex-snapshot
PacBio assembly of aPlasmodium knowlesigenome sequence with Hi-C correction and manual annotation of theSICAvargene family
inferredcites →https://doi.org/10.1023/b:chro.0000045779.50641.00openalex-snapshot
High chromosome conservation detected by comparative chromosome painting in chicken, pigeon and passerine birds
inferredcites →https://doi.org/10.1038/35057062openalex-snapshot
Initial sequencing and analysis of the human genome
inferredcites →https://doi.org/10.1038/hdy.2011.107openalex-snapshot
Chromosomal rearrangements and karyotype evolution in carnivores revealed by chromosome painting
inferredcites →https://doi.org/10.1038/nature03001openalex-snapshot
Finishing the euchromatic sequence of the human genome
inferredcites →https://doi.org/10.1038/nature19840openalex-snapshot
Genome evolution in the allotetraploid frog Xenopus laevis
inferredcites →https://doi.org/10.1038/nature22043openalex-snapshot
A chromosome conformation capture ordered sequence of the barley genome
inferredcites →https://doi.org/10.1038/nbt.2727openalex-snapshot
Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions
inferredcites →https://doi.org/10.1038/nbt.4060openalex-snapshot
Nanopore sequencing and assembly of a human genome with ultra-long reads
inferredcites →https://doi.org/10.1038/ng.3121openalex-snapshot
Comprehensive variation discovery in single human genomes
inferredcites →https://doi.org/10.1038/ng.3802openalex-snapshot
Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome
inferredcites →https://doi.org/10.1038/srep18019openalex-snapshot
Improvement of genome assembly completeness and identification of novel full-length protein-coding genes by RNA-seq in the giant panda genome
inferredcites →https://doi.org/10.1073/pnas.1017351108openalex-snapshot
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/bti769openalex-snapshot
Beware of mis-assembled genomes
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btt086openalex-snapshot
QUAST: quality assessment tool for genome assemblies
inferredcites →https://doi.org/10.1093/bioinformatics/btv262openalex-snapshot
Misassembly detection using paired-end sequence reads and optical mapping data
inferredcites →https://doi.org/10.1093/bioinformatics/btv351openalex-snapshot
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
inferredcites →https://doi.org/10.1093/gigascience/giw015openalex-snapshot
Estimating the total number of phosphoproteins and phosphorylation sites in eukaryotic proteomes
inferredcites →https://doi.org/10.1093/gigascience/gix085openalex-snapshot
De novo PacBio long-read and phased avian genome assemblies correct and add to reference genes generated with intermediate and short reads
inferredcites →https://doi.org/10.1093/ilar/ilt037openalex-snapshot
Improving Genome Assemblies and Annotations for Nonhuman Primates
inferredcites →https://doi.org/10.1093/jhered/esx058openalex-snapshot
Improvement of the Threespine Stickleback Genome Using a Hi-C-Based Proximity-Guided Assembly
inferredcites →https://doi.org/10.1101/110999openalex-snapshot
W2RAP: a pipeline for high quality, robust assemblies of large complex genomes from short read data
inferredcites →https://doi.org/10.1101/gr.131383.111openalex-snapshot
GAGE: A critical evaluation of genome assemblies and assembly algorithms
inferredcites →https://doi.org/10.1101/gr.213611.116openalex-snapshot
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
inferredcites →https://doi.org/10.1101/gr.217117.116openalex-snapshot
An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations
inferredcites →https://doi.org/10.1126/science.1181369openalex-snapshot
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
inferredcites →https://doi.org/10.1126/science.aal3327openalex-snapshot
De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds
inferredcites →https://doi.org/10.1126/science.aao0960openalex-snapshot
Natural selection shaped the rise and fall of passenger pigeon genomic diversity
inferredcites →https://doi.org/10.1186/1471-2164-15-312openalex-snapshot
An improved genome release (version Mt4.0) for the model legume Medicago truncatula
inferredcites →https://doi.org/10.1186/2047-217x-2-10openalex-snapshot
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
inferredcites →https://doi.org/10.1186/gb-2008-9-3-r55openalex-snapshot
Genome assembly forensics: finding the elusive mis-assembly
inferredcites →https://doi.org/10.1186/gb-2009-10-8-r88openalex-snapshot
Assisted assembly: how to improve a de novo genome assembly by using related species
inferredcites →https://doi.org/10.1186/gb-2010-11-4-r41openalex-snapshot
Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps
inferredcites →https://doi.org/10.1186/gb-2013-14-5-r47openalex-snapshot
REAPR: a universal tool for genome assembly evaluation
inferredcites →https://doi.org/10.1186/s12859-017-1735-4openalex-snapshot
BioNanoAnalyst: a visualisation tool to assess genome assembly quality using BioNano data
inferredcites →https://doi.org/10.1186/s12864-016-2531-7openalex-snapshot
Evaluation of DISCOVAR de novo using a mosquito sample for cost-effective short-read genome assembly
inferredcites →https://doi.org/10.1186/s12864-016-3049-8openalex-snapshot
Revealing misassembled segments in the bovine reference genome by high resolution linkage disequilibrium scan
inferredcites →https://doi.org/10.1186/s12864-017-3879-zopenalex-snapshot
Scaffolding of long read assemblies using long range contact information
inferredcites →https://doi.org/10.1186/s13059-017-1253-8openalex-snapshot
Hi-C as a tool for precise detection and characterisation of chromosomal rearrangements and copy number variation in human tumours
inferredcites →https://doi.org/10.1534/g3.114.011197openalex-snapshot
FluorescenceIn SituHybridization and Optical Mapping to Correct Scaffold Arrangement in the Tomato Genome
inferredcites →https://doi.org/10.1534/g3.115.023655openalex-snapshot
Major Improvements to the Heliconius melpomene Genome Assembly Used to Confirm 10 Chromosome Fusion Events in 6 Million Years of Butterfly Evolution
inferredcites →https://doi.org/10.3389/fgene.2015.00220openalex-snapshot
Using linkage maps to correct and scaffold de novo genome assemblies: methods, challenges, and computational tools
inferredcites →https://doi.org/10.48550/arxiv.1605.04619openalex-snapshot
An end-to-end assembly of the Aedes aegypti genome
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1002/ar.70050openalex-snapshot
Ontogenetic changes and sexual dimorphism in the cranium and mandible of the Atlantic walrus ( Odobenus rosmarus rosmarus L.)
inferred← citeshttps://doi.org/10.1002/bit.27432openalex-snapshot
Chromosome‐scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome
inferred← citeshttps://doi.org/10.1002/ece3.71392openalex-snapshot
Rapid Colonisation of Synanthropic Stone Martens in a Highly Urbanised Region: Insights From Temporal and Spatial Analysis
inferred← citeshttps://doi.org/10.1002/ece3.71905openalex-snapshot
A Prelude to Conservation Genomics: First Chromosome‐Level Genome Assembly of a Flying Squirrel (Pteromyini: Pteromys volans )
inferred← citeshttps://doi.org/10.1002/ece3.8815openalex-snapshot
Chromosome‐level genome assembly for the horned‐gall aphid provides insights into interactions between gall‐making insect and its host plant
inferred← citeshttps://doi.org/10.1002/ece3.9185openalex-snapshot
How low can you go? Introducing SeXY: sex identification from low‐quantity sequencing data despite lacking assembled sex chromosomes
inferred← citeshttps://doi.org/10.1002/ppp3.10366openalex-snapshot
Genomics in neglected and underutilized fruit crops: A chromosome‐scale genome sequence of cherimoya ( Annona cherimola )
inferred← citeshttps://doi.org/10.1002/ps.70744openalex-snapshot
A chromosome‐level genome assembly and multi‐omics analysis reveal fenpropathrin resistance mechanisms in the turnip aphid, Lipaphis erysimi
inferred← citeshttps://doi.org/10.1002/tpg2.20223openalex-snapshot
Genome sequence for the blue‐flowered Andean shrub Iochroma cyaneum reveals extensive discordance across the berry clade of Solanaceae
inferred← citeshttps://doi.org/10.1002/tpg2.70114openalex-snapshot
Chromosome‐level genome assembly and annotation of Ulmus minor reveal dynamic intrageneric clusters of resistance genes
inferred← citeshttps://doi.org/10.1007/978-1-0716-4702-8_14openalex-snapshot
High-Quality Plant Genomes for and through Pangenomics
inferred← citeshttps://doi.org/10.1007/978-1-0716-4750-9_12openalex-snapshot
Leveraging Hi-C Data to Detect Chromosomal Reorganizations
inferred← citeshttps://doi.org/10.1007/978-3-031-70591-5_15openalex-snapshot
Genomics of Triatominae, the Chagas Disease Vectors
inferred← citeshttps://doi.org/10.1007/s00239-024-10217-5openalex-snapshot
A Comparative Genomics Approach to Understanding the Evolution of Olfaction in Cetaceans
inferred← citeshttps://doi.org/10.1007/s00425-025-04762-6openalex-snapshot
Chromosome-level genome assembly of the iconic South American mandacaru cactus (Cereus jamacaru DC, Tribe Cereeae, Cactaceae)
inferred← citeshttps://doi.org/10.1007/s10528-026-11421-2openalex-snapshot
Chromosome-Level Genome Assembly of the Sea Urchin Glyptocidaris crenularis and Sex Chromosome Identification
inferred← citeshttps://doi.org/10.1007/s10577-023-09722-yopenalex-snapshot
Chromosome-length genome assemblies and cytogenomic analyses of pangolins reveal remarkable chromosome counts and plasticity
inferred← citeshttps://doi.org/10.1007/s10750-019-04111-1openalex-snapshot
Molluscan genomics: the road so far and the way forward
inferred← citeshttps://doi.org/10.1007/s10914-021-09544-xopenalex-snapshot
Compromised Function of the Pancreatic Transcription Factor PDX1 in a Lineage of Desert Rodents
inferred← citeshttps://doi.org/10.1016/j.cell.2021.01.047openalex-snapshot
African lungfish genome sheds light on the vertebrate water-to-land transition
inferred← citeshttps://doi.org/10.1016/j.cell.2024.06.002openalex-snapshot
Three-dimensional genome architecture persists in a 52,000-year-old woolly mammoth skin sample
inferred← citeshttps://doi.org/10.1016/j.csbj.2021.08.038openalex-snapshot
High-quality reannotation of the king scallop genome reveals no ‘gene-rich’ feature and evolution of toxin resistance
inferred← citeshttps://doi.org/10.1016/j.cub.2021.04.033openalex-snapshot
Whole-genome analysis of giraffe supports four distinct species
inferred← citeshttps://doi.org/10.1016/j.cub.2021.04.035openalex-snapshot
Genome-wide diversity in the California condor tracks its prehistoric abundance and decline
inferred← citeshttps://doi.org/10.1016/j.ibmb.2025.104403openalex-snapshot
Sub-lethal insecticide stress alters epimutation rate but not genetic mutation rate in the pest insect Myzus persicae
inferred← citeshttps://doi.org/10.1016/j.jare.2021.10.009openalex-snapshot
Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement
inferred← citeshttps://doi.org/10.1016/j.pbi.2020.03.005openalex-snapshot
Gene and genome duplications in the evolution of chemodiversity: perspectives from studies of Lamiaceae
inferred← citeshttps://doi.org/10.1016/j.plantsci.2023.111917openalex-snapshot
High-quality maple genome reveals duplication-facilitated leaf color diversity
inferred← citeshttps://doi.org/10.1016/j.xgen.2025.100808openalex-snapshot
Centromeric transposable elements and epigenetic status drive karyotypic variation in the eastern hoolock gibbon
inferred← citeshttps://doi.org/10.1016/j.ygeno.2023.110729openalex-snapshot
Chromosome-level genome assembly and population genomic analysis provide novel insights into the immunity and evolution of Sogatella furcifera
inferred← citeshttps://doi.org/10.1021/acs.jproteome.2c00711openalex-snapshot
Toward an Integrated Machine Learning Model of a Proteomics Experiment
inferred← citeshttps://doi.org/10.1038/s41421-021-00286-xopenalex-snapshot
The Cardamine enshiensis genome reveals whole genome duplication and insight into selenium hyperaccumulation and tolerance
inferred← citeshttps://doi.org/10.1038/s41438-020-0328-yopenalex-snapshot
A chromosome-scale reference genome of Aquilegia oxysepala var. kansuensis
inferred← citeshttps://doi.org/10.1038/s41438-021-00471-9openalex-snapshot
The genome of Magnolia biondii Pamp. provides insights into the evolution of Magnoliales and biosynthesis of terpenoids
inferred← citeshttps://doi.org/10.1038/s41467-020-15040-2openalex-snapshot
Gene clustering and copy number variation in alkaloid metabolic pathways of opium poppy
inferred← citeshttps://doi.org/10.1038/s41467-022-29114-wopenalex-snapshot
Chromosome evolution and the genetic basis of agronomically important traits in greater yam
inferred← citeshttps://doi.org/10.1038/s41467-022-29599-5openalex-snapshot
Anopheles mosquitoes reveal new principles of 3D genome organization in insects
inferred← citeshttps://doi.org/10.1038/s41467-023-40407-6openalex-snapshot
Subtelomeric 5-enolpyruvylshikimate-3-phosphate synthase copy number variation confers glyphosate resistance in Eleusine indica
inferred← citeshttps://doi.org/10.1038/s41467-023-42336-wopenalex-snapshot
Identification of errors in draft genome assemblies at single-nucleotide resolution for quality assessment and improvement
inferred← citeshttps://doi.org/10.1038/s41467-023-43012-9openalex-snapshot
Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs
inferred← citeshttps://doi.org/10.1038/s41467-024-44761-xopenalex-snapshot
Orchestrating chromosome conformation capture analysis with Bioconductor
inferred← citeshttps://doi.org/10.1038/s41467-024-55724-7openalex-snapshot
UV-induced reorganization of 3D genome mediates DNA damage response
inferred← citeshttps://doi.org/10.1038/s41467-025-61289-wopenalex-snapshot
Genomic and epigenomic insight into giga-chromosome architecture and adaptive evolution of royal lily (Lilium regale)
inferred← citeshttps://doi.org/10.1038/s41467-026-71958-zopenalex-snapshot
Clusia genomes shed light on the evolution and diversity of crassulacean acid metabolism physiotypes
inferred← citeshttps://doi.org/10.1038/s41467-026-73233-7openalex-snapshot
An X-linked sex determination mechanism in cannabis and hop
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Insights into angiosperm evolution, floral development and chemical biosynthesis from the Aristolochia fimbriata genome
inferred← citeshttps://doi.org/10.1038/s41477-023-01608-5openalex-snapshot
Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment
inferred← citeshttps://doi.org/10.1038/s41477-025-02060-3openalex-snapshot
Two Melanthiaceae genomes with dramatic size difference provide insights into giant genome evolution and maintenance
inferred← citeshttps://doi.org/10.1038/s41477-026-02220-zopenalex-snapshot
Elucidation of gene clusters underlying withanolide biosynthesis in ashwagandha through yeast metabolic engineering
inferred← citeshttps://doi.org/10.1038/s41559-022-01703-4openalex-snapshot
Genomic signatures of high-altitude adaptation and chromosomal polymorphism in geladas
inferred← citeshttps://doi.org/10.1038/s41559-023-02001-3openalex-snapshot
Convergent and complementary selection shaped gains and losses of eusociality in sweat bees
inferred← citeshttps://doi.org/10.1038/s41559-024-02337-4openalex-snapshot
Genomics of post-bottleneck recovery in the northern elephant seal
inferred← citeshttps://doi.org/10.1038/s41559-025-02837-xopenalex-snapshot
Twenty years of tuberculosis-driven selection shaped the evolution of the meerkat major histocompatibility complex
inferred← citeshttps://doi.org/10.1038/s41559-026-03009-1openalex-snapshot
Rapid mid-Cretaceous diversification of squid and cuttlefish preceded radiation into coastal niches
inferred← citeshttps://doi.org/10.1038/s41586-018-0692-zopenalex-snapshot
Improved reference genome of Aedes aegypti informs arbovirus vector control
inferred← citeshttps://doi.org/10.1038/s41586-023-05936-6openalex-snapshot
Ancient gene linkages support ctenophores as sister to other animals
inferred← citeshttps://doi.org/10.1038/s41586-024-07305-3openalex-snapshot
Emx2 underlies the development and evolution of marsupial gliding membranes
inferred← citeshttps://doi.org/10.1038/s41586-025-08883-6openalex-snapshot
A pangenome reference of wild and cultivated rice
inferred← citeshttps://doi.org/10.1038/s41586-026-10180-9openalex-snapshot
Gene conversion empowers natural selection in a clonal fish species
inferred← citeshttps://doi.org/10.1038/s41588-019-0405-zopenalex-snapshot
The genome sequence of segmental allotetraploid peanut Arachis hypogaea
inferred← citeshttps://doi.org/10.1038/s41596-021-00633-yopenalex-snapshot
SPRITE: a genome-wide method for mapping higher-order 3D interactions in the nucleus using combinatorial split-and-pool barcoding
inferred← citeshttps://doi.org/10.1038/s41597-023-02420-8openalex-snapshot
Chromosome-scale genomes of commercial timber trees (Ochroma pyramidale, Mesua ferrea, and Tectona grandis)
inferred← citeshttps://doi.org/10.1038/s41597-023-02707-wopenalex-snapshot
Chromosome-scale genomes of commercially important mahoganies, Swietenia macrophylla and Khaya senegalensis
inferred← citeshttps://doi.org/10.1038/s41597-024-03459-xopenalex-snapshot
Chromosome-scale genome assembly of oil-tea tree Camellia crapnelliana
inferred← citeshttps://doi.org/10.1038/s41597-024-03628-yopenalex-snapshot
Improved high quality sand fly assemblies enabled by ultra low input long read sequencing
inferred← citeshttps://doi.org/10.1038/s41597-024-04097-zopenalex-snapshot
Chromosome-level genome assemblies of sunflower oilseed and confectionery cultivars
inferred← citeshttps://doi.org/10.1038/s41597-024-04119-wopenalex-snapshot
Chromosome-level genome assembly and annotation of the Patagonian toothfish Dissostichus eleginoides
inferred← citeshttps://doi.org/10.1038/s41597-024-04220-0openalex-snapshot
De novo assembly of a near-complete genome of aquatic vegetable Zizania latifolia in the Yangtze River Basin
inferred← citeshttps://doi.org/10.1038/s41597-024-04284-yopenalex-snapshot
High-quality chromosome-scale genome assembly of Laudakia wui (Laudakia, Agamidae)
inferred← citeshttps://doi.org/10.1038/s41597-025-04373-6openalex-snapshot
Chromosome-scale telomere to telomere genome assembly of common crystalwort (Riccia sorocarpa Bisch.)
inferred← citeshttps://doi.org/10.1038/s41597-025-04787-2openalex-snapshot
Chromosome-level genome assembly of a critically endangered species Leuciscus chuanchicus
inferred← citeshttps://doi.org/10.1038/s41597-025-05372-3openalex-snapshot
Haplotype-resolved genome assembly of the tetraploid potato cultivar Désirée
inferred← citeshttps://doi.org/10.1038/s41597-025-05703-4openalex-snapshot
An annotated chromosome-level genome of a troglophilic spider (Pimoa clavata)
inferred← citeshttps://doi.org/10.1038/s41597-025-06345-2openalex-snapshot
Telomere-to-telomere haplotype-resolved genome assembly of a female oyster pompano (Trachinotus anak)
inferred← citeshttps://doi.org/10.1038/s41597-026-06561-4openalex-snapshot
Haplotype-resolved chromosome-level genome assembly of creeping bentgrass, Agrostis stolonifera
inferred← citeshttps://doi.org/10.1038/s41597-026-07126-1openalex-snapshot
An annotated genome of freshwater amphipod (Gammarus nekkensis)
inferred← citeshttps://doi.org/10.1038/s41597-026-07395-wopenalex-snapshot
Eupentacta fraudatrix: the first chromosome-level holothurian genome with extraordinarily high heterozygosity
inferred← citeshttps://doi.org/10.1038/s41598-021-83903-9openalex-snapshot
Erythrocytes 3D genome organization in vertebrates
inferred← citeshttps://doi.org/10.1038/s41598-022-25078-5openalex-snapshot
A chromosome-level genome assembly of Plantago ovata
inferred← citeshttps://doi.org/10.1038/s41598-023-39937-2openalex-snapshot
Robertsonian fusion triggers recombination suppression on sex chromosomes in Coleonyx geckos
inferred← citeshttps://doi.org/10.1038/s42003-020-1096-9openalex-snapshot
Analysis of muntjac deer genome and chromatin architecture reveals rapid karyotype evolution
inferred← citeshttps://doi.org/10.1038/s42003-021-01698-xopenalex-snapshot
A novel canine reference genome resolves genomic architecture and uncovers transcript complexity
inferred← citeshttps://doi.org/10.1038/s42003-021-02373-xopenalex-snapshot
Global patterns in genomic diversity underpinning the evolution of insecticide resistance in the aphid crop pest Myzus persicae
inferred← citeshttps://doi.org/10.1038/s42003-022-03751-9openalex-snapshot
The chromosome-scale genome sequence of Triadica sebifera provides insight into fatty acids and anthocyanin biosynthesis
inferred← citeshttps://doi.org/10.1038/s42003-023-04514-wopenalex-snapshot
Range-wide whole-genome resequencing of the brown bear reveals drivers of intraspecies divergence
inferred← citeshttps://doi.org/10.1038/s42003-024-06660-1openalex-snapshot
Chromosome-level genome assemblies reveal genome evolution of an invasive plant Phragmites australis
inferred← citeshttps://doi.org/10.1073/pnas.2119602119openalex-snapshot
Leafy and weedy seadragon genomes connect genic and repetitive DNA features to the extravagant biology of syngnathid fishes
inferred← citeshttps://doi.org/10.1073/pnas.2120555119openalex-snapshot
Conservation of chromatin conformation in carnivores
inferred← citeshttps://doi.org/10.1073/pnas.2200016119openalex-snapshot
Insights into bear evolution from a Pleistocene polar bear genome
inferred← citeshttps://doi.org/10.1073/pnas.2310763120openalex-snapshot
The genome of the black-footed cat: Revealing a rich natural history and urgent conservation priorities for small felids
inferred← citeshttps://doi.org/10.1073/pnas.2312607121openalex-snapshot
Extraordinary preservation of gene collinearity over three hundred million years revealed in homosporous lycophytes
inferred← citeshttps://doi.org/10.1073/pnas.2313440121openalex-snapshot
The genetic regulatory architecture and epigenomic basis for age-related changes in rattlesnake venom
inferred← citeshttps://doi.org/10.1073/pnas.2504773122openalex-snapshot
The genome of the vining fern Lygodium microphyllum highlights genomic and functional differences between life phases of an invasive plant
inferred← citeshttps://doi.org/10.1093/bfgp/elz026openalex-snapshot
Genome reconstruction and haplotype phasing using chromosome conformation capture methodologies
inferred← citeshttps://doi.org/10.1093/g3journal/jkaa052openalex-snapshot
Genome sequence of Monilinia vaccinii-corymbosi sheds light on mummy berry disease infection of blueberry and mating type
inferred← citeshttps://doi.org/10.1093/g3journal/jkab212openalex-snapshot
Chromosome-level genome assembly of the blue crab,Callinectes sapidus
inferred← citeshttps://doi.org/10.1093/g3journal/jkac277openalex-snapshot
Genome report: chromosome-level draft assemblies of the snow leopard, African leopard, and tiger ( Panthera uncia , Panthera pardus pardus , and Panthera tigris )
inferred← citeshttps://doi.org/10.1093/g3journal/jkac289openalex-snapshot
A chromosome-length genome assembly and annotation of blackberry ( Rubus argutus , cv. “Hillquist”)
inferred← citeshttps://doi.org/10.1093/g3journal/jkac339openalex-snapshot
Chromosome-level genome of the three-spot damselfish, Dascyllus trimaculatus
inferred← citeshttps://doi.org/10.1093/g3journal/jkad177openalex-snapshot
Genome Report: chromosome-scale genome assembly of the African spiny mouse (Acomys cahirinus)
inferred← citeshttps://doi.org/10.1093/g3journal/jkad220openalex-snapshot
A chromosome-level reference genome for the common octopus, Octopus vulgaris (Cuvier, 1797)
inferred← citeshttps://doi.org/10.1093/g3journal/jkae304openalex-snapshot
A near-complete telomere-to-telomere genome assembly for Batrachochytrium dendrobatidis GPL JEL423 reveals a larger CBM18 gene family and a smaller M36 metalloprotease gene family than previously recognized
inferred← citeshttps://doi.org/10.1093/g3journal/jkaf109openalex-snapshot
Chromosome-length genome assembly of the critically endangered Mountain bongo (Tragelaphus eurycerus isaaci): a resource for conservation and comparative genomics
inferred← citeshttps://doi.org/10.1093/g3journal/jkaf181openalex-snapshot
New reference genome assembly for the declining American Bumble Bee, Bombus pensylvanicus
inferred← citeshttps://doi.org/10.1093/g3journal/jkaf271openalex-snapshot
De novo genome assembly of Ansell's mole-rat ( Fukomys anselli )
inferred← citeshttps://doi.org/10.1093/g3journal/jkag041openalex-snapshot
Reference genome assemblies for the North American bumble bees Bombus flavifrons and Bombus fervidus , two phenotypically polymorphic species from distinct phylogenetic lineages
inferred← citeshttps://doi.org/10.1093/g3journal/jkag067openalex-snapshot
Chromosome-scale genome assembly and characterization of Saccharomycopsis schoenii , a necrotrophic predatory yeast
inferred← citeshttps://doi.org/10.1093/g3journal/jkag135openalex-snapshot
A haplotype-resolved, chromosome-scale genome assembly and annotation for Carya glabra (pignut hickory; Juglandaceae)
inferred← citeshttps://doi.org/10.1093/gbe/evaa255openalex-snapshot
Whole-Genome Sequencing of Procyonids Reveals Distinct Demographic Histories in Kinkajou (Potos flavus) and Northern Raccoon (Procyon lotor)
inferred← citeshttps://doi.org/10.1093/gbe/evac044openalex-snapshot
Chromosome-Level Genome Assembly of the Bioluminescent Cardinalfish Siphamia tubifer: An Emerging Model for Symbiosis Research
inferred← citeshttps://doi.org/10.1093/gbe/evac122openalex-snapshot
A Chromosome-Length Reference Genome for the Endangered Pacific Pocket Mouse Reveals Recent Inbreeding in a Historically Large Population
inferred← citeshttps://doi.org/10.1093/gbe/evad024openalex-snapshot
A Chromosome-length Assembly of the Black Petaltail ( Tanypteryx hageni ) Dragonfly
inferred← citeshttps://doi.org/10.1093/gbe/evae127openalex-snapshot
First Chromosome-Level Genome Assembly of a Ribbon Worm from the Hoplonemertea Clade, Emplectonema gracile , and Its Structural Annotation
inferred← citeshttps://doi.org/10.1093/gbe/evae215openalex-snapshot
The Hypolimnas misippus Genome Supports a Common Origin of the W Chromosome in Lepidoptera
inferred← citeshttps://doi.org/10.1093/gbe/evae238openalex-snapshot
Chromosome-Level Genome Assembly of the Australian Rainforest Tree Rhodamnia argentea (Malletwood)
inferred← citeshttps://doi.org/10.1093/gbe/evaf060openalex-snapshot
Parameterizing Pantherinae: De Novo Mutation Rate Estimates from Panthera and Neofelis Pedigrees
inferred← citeshttps://doi.org/10.1093/gbe/evaf170openalex-snapshot
The Genome Sequence of the Hemlock Woolly Adelgid, Adelges tsugae Annand 1924
inferred← citeshttps://doi.org/10.1093/gbe/evaf196openalex-snapshot
Structural Rearrangements and Selection Promote Phenotypic Evolution in Anolis Lizards
inferred← citeshttps://doi.org/10.1093/gbe/evag014openalex-snapshot
Comparative Genomics and Phylogenomics of the Mustelinae Lineage (Mustelidae, Carnivora)
inferred← citeshttps://doi.org/10.1093/gbe/evag018openalex-snapshot
Genomics of Sable ( Martes zibellina) × Pine Marten ( Martes martes ) Hybridization
inferred← citeshttps://doi.org/10.1093/gbe/evag084openalex-snapshot
One Sea, Different Whales: Genomics Sheds Light on a Small Population of Fin Whales
inferred← citeshttps://doi.org/10.1093/gigascience/giaa027openalex-snapshot
Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C
inferred← citeshttps://doi.org/10.1093/gigascience/giaa037openalex-snapshot
The gene-rich genome of the scallop Pecten maximus
inferred← citeshttps://doi.org/10.1093/gigascience/giaa134openalex-snapshot
Accurate assembly of the olive baboon ( Papio anubis ) genome using long-read and Hi-C data
inferred← citeshttps://doi.org/10.1093/gigascience/giab017openalex-snapshot
Chromosome-level genome assemblies of the malaria vectors Anopheles coluzzii and Anopheles arabiensis
inferred← citeshttps://doi.org/10.1093/gigascience/giac025openalex-snapshot
Chromosome-length genome assembly and linkage map of a critically endangered Australian bird: the helmeted honeyeater
inferred← citeshttps://doi.org/10.1093/gigascience/giag014openalex-snapshot
Improved genome assembly of whale shark, the world’s biggest fish: revealing intragenomic heterogeneity in molecular evolution
inferred← citeshttps://doi.org/10.1093/gigascience/giy120openalex-snapshot
Chromosomal-level assembly of yellow catfish genome using third-generation DNA sequencing and Hi-C analysis
inferred← citeshttps://doi.org/10.1093/gigascience/giz085openalex-snapshot
De novo genome assembly of the endangered Acer yangbiense, a plant species with extremely small populations endemic to Yunnan Province, China
inferred← citeshttps://doi.org/10.1093/gigascience/giz158openalex-snapshot
Multifaceted Hi-C benchmarking: what makes a difference in chromosome-scale genome scaffolding?
inferred← citeshttps://doi.org/10.1093/hr/uhag203openalex-snapshot
Deciphering genetic basis of phenylethanoid glycoside production through integrative multiomics analysis in Callicarpa nudiflora
inferred← citeshttps://doi.org/10.1093/ismeco/ycad003openalex-snapshot
Host species and geography impact bee-associated RNA virus communities with evidence for isolation by distance in viral populations
inferred← citeshttps://doi.org/10.1093/jhered/esab009openalex-snapshot
Limited Evidence for Parallel Evolution Among Desert-AdaptedPeromyscusDeer Mice
inferred← citeshttps://doi.org/10.1093/jhered/esab010openalex-snapshot
Genome Assembly of SalicaceaePopulus deltoides(Eastern Cottonwood)I-69Based on Nanopore Sequencing and Hi-C Technologies
inferred← citeshttps://doi.org/10.1093/jhered/esae044openalex-snapshot
An unusually large genome from an unusually large stonefly: A chromosome-length genome assembly for the giant salmonfly, Pteronarcys californica (Plecoptera: Pteronarcyidae)
inferred← citeshttps://doi.org/10.1093/jhered/esae052openalex-snapshot
A chromosome phased diploid genome assembly of African hunting dog (Lycaon pictus)
inferred← citeshttps://doi.org/10.1093/jhered/esaf001openalex-snapshot
Chromosome-length genome assembly of the stone marten (Martes foina, Mustelidae): A new view on one of the cornerstones in carnivore cytogenetics
inferred← citeshttps://doi.org/10.1093/jhered/esaf062openalex-snapshot
The annotated, chromosome-scale Salicornia depressa (American pickleweed) genome
inferred← citeshttps://doi.org/10.1093/jhered/esaf101openalex-snapshot
Novel chromosome-length genome assemblies of three distinct subspecies of pine marten, sable, and yellow-throated marten (genus Martes , family Mustelidae)
inferred← citeshttps://doi.org/10.1093/molbev/msaa246openalex-snapshot
Chromosome-Scale Genome Assemblies of Aphids Reveal Extensively Rearranged Autosomes and Long-Term Conservation of the X Chromosome
inferred← citeshttps://doi.org/10.1093/molbev/msaa319openalex-snapshot
Origin of a Giant Sex Chromosome
inferred← citeshttps://doi.org/10.1093/molbev/msab127openalex-snapshot
Elephant Genomes Reveal Accelerated Evolution in Mechanisms Underlying Disease Defenses
inferred← citeshttps://doi.org/10.1093/molbev/msad190openalex-snapshot
Pangolin Genomes Offer Key Insights and Resources for the World’s Most Trafficked Wild Mammals
inferred← citeshttps://doi.org/10.1093/molbev/msae246openalex-snapshot
The Sensory Shark: High-quality Morphological, Genomic and Transcriptomic Data for the Small-spotted Catshark Scyliorhinus Canicula Reveal the Molecular Bases of Sensory Organ Evolution in Jawed Vertebrates
inferred← citeshttps://doi.org/10.1093/molbev/msaf292openalex-snapshot
Coexisting With Humans: Genomic and Behavioral Consequences in a Small and Isolated Bear Population
inferred← citeshttps://doi.org/10.1093/plcell/koac305openalex-snapshot
Establishing Physalis as a Solanaceae model system enables genetic reevaluation of the inflated calyx syndrome
inferred← citeshttps://doi.org/10.1093/plcell/koad258openalex-snapshot
Cell layer–specific expression of the homeotic MADS-box transcription factor PhDEF contributes to modular petal morphogenesis in petunia
inferred← citeshttps://doi.org/10.1093/plphys/kiag551openalex-snapshot
The control of prickle formation in Rubus
inferred← citeshttps://doi.org/10.1093/sysbio/syac025openalex-snapshot
Reunion of Australasian Possums by Shared SINE Insertions
inferred← citeshttps://doi.org/10.1101/2020.05.29.124396openalex-snapshot
Elephant Genomes Elucidate Disease Defenses and Other Traits
inferred← citeshttps://doi.org/10.1101/2020.06.17.158428openalex-snapshot
The genome assembly and annotation of Magnolia biondii Pamp., a phylogenetically, economically, and medicinally important ornamental tree species
inferred← citeshttps://doi.org/10.1101/2020.06.29.178392openalex-snapshot
Limited evidence for parallel evolution among desert adapted Peromyscus deer mice
inferred← citeshttps://doi.org/10.1101/2020.09.30.320150openalex-snapshot
A pseudomolecule assembly of the Rocky Mountain elk genome reveals putative immune system gene loss near chromosomal fissions
inferred← citeshttps://doi.org/10.1101/2020.10.30.362970openalex-snapshot
A nonsense mutation in TFEC is the likely cause of the recessive piebald phenotype in ball pythons ( Python regius )
inferred← citeshttps://doi.org/10.1101/2020.11.02.365791openalex-snapshot
The meadow jumping mouse genome and transcriptome suggest mechanisms of hibernation
inferred← citeshttps://doi.org/10.1101/2021.04.14.439117openalex-snapshot
Chromosome evolution and the genetic basis of agronomically important traits in greater yam
inferred← citeshttps://doi.org/10.1101/2021.09.03.458932openalex-snapshot
Chromosomal-level genome assembly of the bioluminescent cardinalfish Siphamia tubifer , an emerging model for symbiosis research
inferred← citeshttps://doi.org/10.1101/2021.10.11.463868openalex-snapshot
Draft genomes of a male and female Australian jacky dragon (Amphibolurus muricatus)
inferred← citeshttps://doi.org/10.1101/2021.10.18.464293openalex-snapshot
Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs
inferred← citeshttps://doi.org/10.1101/2021.11.04.467120openalex-snapshot
How low can you go: sex identification from low-quantity sequencing data despite lacking assembled sex chromosomes
inferred← citeshttps://doi.org/10.1101/2022.02.15.22270795openalex-snapshot
Balanced chromosomal rearrangements offer insights into coding and noncoding genomic features associated with developmental disorders
inferred← citeshttps://doi.org/10.1101/2022.02.15.480582openalex-snapshot
Neocentromere formation through Robertsonian fusion and centromere repositioning during the evolution of zebras
inferred← citeshttps://doi.org/10.1101/2022.03.31.486393openalex-snapshot
A chromosome-length assembly of the Hawaiian Monk seal ( Neomonarchus schauinslandi ) confirms genomic stability in the Pinnipeds and a prolonged history of “genetic purging”
inferred← citeshttps://doi.org/10.1101/2022.05.23.492988openalex-snapshot
An Igh novel enhancer modulates antigen receptor diversity by determining locus conformation
inferred← citeshttps://doi.org/10.1101/2022.10.13.512124openalex-snapshot
Chromosome-level genome assembly of Euphorbia peplus , a model system for plant latex, reveals that relative lack of Ty3 transposons contributed to its small genome size
inferred← citeshttps://doi.org/10.1101/2022.11.17.516921openalex-snapshot
A novel fishing cat reference genome for the evaluation of potential germline risk variants
inferred← citeshttps://doi.org/10.1101/2023.01.26.525801openalex-snapshot
The Australasian dingo archetype: De novo chromosome-length genome assembly, DNA methylome, and cranial morphology
inferred← citeshttps://doi.org/10.1101/2023.03.05.531170openalex-snapshot
Seagrass genomes reveal a hexaploid ancestry facilitating adaptation to the marine environment
inferred← citeshttps://doi.org/10.1101/2023.04.10.536216openalex-snapshot
The soil-borne white root rot pathogen Rosellinia necatrix expresses antimicrobial proteins during host colonization
inferred← citeshttps://doi.org/10.1101/2023.05.16.540917openalex-snapshot
Benchmarking of Hi-C tools for scaffolding de novo genome assemblies
inferred← citeshttps://doi.org/10.1101/2023.05.22.541698openalex-snapshot
Neo-functionalization and co-option of Pif genes facilitate the evolution of a novel shell microstructure in oysters
inferred← citeshttps://doi.org/10.1101/2023.05.30.542816openalex-snapshot
Structural evidence for MADS-box type I family expansion seen in new assemblies of A. arenosa and A. lyrata
inferred← citeshttps://doi.org/10.1101/2023.08.27.555031openalex-snapshot
AutoHiC: a deep-learning method for automatic and accurate chromosome-level genome assembly
inferred← citeshttps://doi.org/10.1101/2024.01.07.574508openalex-snapshot
Chromosome-scale genome assembly of Camellia crapnelliana provides insights into the fatty acid biosynthesis
inferred← citeshttps://doi.org/10.1101/2024.02.25.582000openalex-snapshot
Genome Report: The reference genome of an endangered Asteraceae, Deinandra increscens subsp. villosa , endemic to the Central Coast of California
inferred← citeshttps://doi.org/10.1101/2024.05.12.593736openalex-snapshot
Acceleration of genome rearrangement in clitellate annelids
inferred← citeshttps://doi.org/10.1101/2024.06.04.597355openalex-snapshot
Chromosome-level genome assembly of the sacoglossan sea slug Elysia timida (Risso, 1818)
inferred← citeshttps://doi.org/10.1101/2024.10.08.617303openalex-snapshot
Genome of the enigmatic watering-pot shell reveals adaptations of a living suction anchor
inferred← citeshttps://doi.org/10.1101/2024.10.22.619730openalex-snapshot
A near-complete telomere-to-telomere genome assembly for Batrachochytrium dendrobatidis GPL JEL423 reveals a CBM18 gene family expansion and a M36 metalloprotease gene family contraction
inferred← citeshttps://doi.org/10.1101/2025.01.22.633974openalex-snapshot
Extensive genome evolution distinguishes maize within a stable tribe of grasses
inferred← citeshttps://doi.org/10.1101/2025.04.08.647763openalex-snapshot
Sex differentiation, divergence, and introgression in the leishmaniasis vector Lutzomyia longipalpis
inferred← citeshttps://doi.org/10.1101/341636openalex-snapshot
The interspecific fungal hybrid Verticillium longisporum displays sub-genome-specific gene expression
inferred← citeshttps://doi.org/10.1101/473553openalex-snapshot
Hi-C yields chromosome-length scaffolds for a legume genome, Trifolium subterraneum
inferred← citeshttps://doi.org/10.1101/867341openalex-snapshot
Chromosomal-level genome assembly of the scimitar-horned oryx: insights into diversity and demography of a species extinct in the wild
inferred← citeshttps://doi.org/10.1101/gr.275790.121openalex-snapshot
Somatic structural variant formation is guided by and influences genome architecture
inferred← citeshttps://doi.org/10.1111/1440-1703.12545openalex-snapshot
Demographic history of the Malayan tapirs ( Tapirus indicus ) in Southeast Asia
inferred← citeshttps://doi.org/10.1111/1755-0998.13129openalex-snapshot
Long‐read sequencing and de novo assembly of the Luffa cylindrica (L.) Roem. genome
inferred← citeshttps://doi.org/10.1111/1755-0998.13181openalex-snapshot
Chromosomal‐level genome assembly of the scimitar‐horned oryx: Insights into diversity and demography of a species extinct in the wild
inferred← citeshttps://doi.org/10.1111/1755-0998.13246openalex-snapshot
Chromosome‐level de novo genome assembly of Sarcophaga peregrina provides insights into the evolutionary adaptation of flesh flies
inferred← citeshttps://doi.org/10.1111/1755-0998.13252openalex-snapshot
Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird‐of‐paradise
inferred← citeshttps://doi.org/10.1111/1755-0998.13258openalex-snapshot
A chromosome‐level genome assembly of the woolly apple aphid, Eriosoma lanigerum Hausmann (Hemiptera: Aphididae)
inferred← citeshttps://doi.org/10.1111/1755-0998.13273openalex-snapshot
High‐quality chromosome‐level genomes of two tilapia species reveal their evolution of repeat sequences and sex chromosomes
inferred← citeshttps://doi.org/10.1111/1755-0998.13291openalex-snapshot
The chromosome‐level genome sequence and karyotypic evolution of Megadenia pygmaea (Brassicaceae)
inferred← citeshttps://doi.org/10.1111/1755-0998.13443openalex-snapshot
Hi‐C scaffolded short‐ and long‐read genome assemblies of the California sea lion are broadly consistent for syntenic inference across 45 million years of evolution
inferred← citeshttps://doi.org/10.1111/1755-0998.13574openalex-snapshot
Chromosome‐level de novo genome assembly of Telopea speciosissima (New South Wales waratah) using long‐reads, linked‐reads and Hi‐C
inferred← citeshttps://doi.org/10.1111/1755-0998.13601openalex-snapshot
Chromosomal‐level genome of a sheet‐web spider provides insight into the composition and evolution of venom
inferred← citeshttps://doi.org/10.1111/1755-0998.13844openalex-snapshot
Easy‐to‐use R functions to separate reduced‐representation genomic datasets into sex‐linked and autosomal loci, and conduct sex assignment
inferred← citeshttps://doi.org/10.1111/1755-0998.13988openalex-snapshot
The Primula edelbergii S ‐locus is an example of a jumping supergene
inferred← citeshttps://doi.org/10.1111/1755-0998.14010openalex-snapshot
High‐quality genome assemblies for nine non‐model North American insect species representing six orders (Insecta: Coleoptera, Diptera, Hemiptera, Hymenoptera, Lepidoptera, Neuroptera)
inferred← citeshttps://doi.org/10.1111/acv.70030openalex-snapshot
Microhaplotype Methods Enable Relationship Inference in a Bottlenecked Mammalian Species
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