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Gene function contributes to gene expression levels in S. cerevisiae

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/pmic.201000327openalex-snapshot

Protein abundances are more conserved than mRNA abundances across diverse taxa

inferredcites →https://doi.org/10.1002/pmic.201400441openalex-snapshot

Version 4.0 of PaxDb: Protein abundance data, integrated across model organisms, tissues, and cell‐lines

inferredcites →https://doi.org/10.1016/j.cell.2016.03.014openalex-snapshot

On the Dependency of Cellular Protein Levels on mRNA Abundance

inferredcites →https://doi.org/10.1016/j.celrep.2016.07.006openalex-snapshot

A Transcript-Specific eIF3 Complex Mediates Global Translational Control of Energy Metabolism

inferredcites →https://doi.org/10.1016/j.febslet.2009.10.036openalex-snapshot

Correlation of mRNA and protein in complex biological samples

inferredcites →https://doi.org/10.1016/j.fgb.2008.07.022openalex-snapshot

Comprehensive genomic analysis of cell wall genes in Aspergillus nidulans

inferredcites →https://doi.org/10.1016/s0092-8674(00)81845-0openalex-snapshot

Characterization of the Yeast Transcriptome

inferredcites →https://doi.org/10.1016/s0168-9525(00)02108-9openalex-snapshot

Genome-wide analysis relating expression level with protein subcellular localization

inferredcites →https://doi.org/10.1038/75556openalex-snapshot

Gene Ontology: tool for the unification of biology

inferredcites →https://doi.org/10.1038/nature02046openalex-snapshot

Global analysis of protein expression in yeast

inferredcites →https://doi.org/10.1038/nature03842openalex-snapshot

Optimality and evolutionary tuning of the expression level of a protein

inferredcites →https://doi.org/10.1038/nmeth.1226openalex-snapshot

Mapping and quantifying mammalian transcriptomes by RNA-Seq

inferredcites →https://doi.org/10.1038/nrg2538openalex-snapshot

A census of human transcription factors: function, expression and evolution

inferredcites →https://doi.org/10.1038/nrg3185openalex-snapshot

Insights into the regulation of protein abundance from proteomic and transcriptomic analyses

inferredcites →https://doi.org/10.1073/pnas.0901620106openalex-snapshot

The cost of gene expression underlies a fitness trade-off in yeast

inferredcites →https://doi.org/10.1073/pnas.1114477108openalex-snapshot

Physical limits of cells and proteomes

inferredcites →https://doi.org/10.1074/mcp.m115.054288openalex-snapshot

Direct and Absolute Quantification of over 1800 Yeast Proteins via Selected Reaction Monitoring

inferredcites →https://doi.org/10.1091/mbc.9.12.3273openalex-snapshot

Comprehensive Identification of Cell Cycle–regulated Genes of the YeastSaccharomyces cerevisiaeby Microarray Hybridization

inferredcites →https://doi.org/10.1091/mbc.e06-10-0973openalex-snapshot

The Size of the Nucleus Increases as Yeast Cells Grow

inferredcites →https://doi.org/10.1093/bioinformatics/bth456openalex-snapshot

GO::TermFinder—open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes

inferredcites →https://doi.org/10.1093/bioinformatics/btq281openalex-snapshot

Manipulation of FASTQ data with Galaxy

inferredcites →https://doi.org/10.1093/bioinformatics/btu638openalex-snapshot

HTSeq—a Python framework to work with high-throughput sequencing data

inferredcites →https://doi.org/10.1093/femsyr/fov068openalex-snapshot

Glucose repression in Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1093/molbev/msi126openalex-snapshot

Energy Constraints on the Evolution of Gene Expression

inferredcites →https://doi.org/10.1093/nar/28.6.1481openalex-snapshot

Analysis of the yeast transcriptome with structural and functional categories: characterizing highly expressed proteins

inferredcites →https://doi.org/10.1093/nar/gkq1019openalex-snapshot

The Sequence Read Archive

inferredcites →https://doi.org/10.1093/nar/gkr1029openalex-snapshot

Saccharomyces Genome Database: the genomics resource of budding yeast

inferredcites →https://doi.org/10.1093/nar/gkr853openalex-snapshot

PomBase: a comprehensive online resource for fission yeast

inferredcites →https://doi.org/10.1093/nar/gku1040openalex-snapshot

PomBase 2015: updates to the fission yeast database

inferredcites →https://doi.org/10.1101/116913openalex-snapshot

Quantitating Translational Control: mRNA Abundance-Dependent and Independent Contributions and the mRNA Sequences That Specify Them

inferredcites →https://doi.org/10.1111/j.2517-6161.1995.tb02031.xopenalex-snapshot

Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing

inferredcites →https://doi.org/10.1126/science.1158441openalex-snapshot

The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing

inferredcites →https://doi.org/10.1126/science.1242379openalex-snapshot

Primate Transcript and Protein Expression Levels Evolve Under Compensatory Selection Pressures

inferredcites →https://doi.org/10.1126/science.1247833openalex-snapshot

Protein Expression Under Pressure

inferredcites →https://doi.org/10.1128/mcb.00025-13openalex-snapshot

The Yeast Snt2 Protein Coordinates the Transcriptional Response to Hydrogen Peroxide-Mediated Oxidative Stress

inferredcites →https://doi.org/10.1128/mmbr.63.3.554-569.1999openalex-snapshot

Function and Regulation of Yeast Hexose Transporters

inferredcites →https://doi.org/10.1146/annurev.genet.40.110405.090439openalex-snapshot

Orthology and Functional Conservation in Eukaryotes

inferredcites →https://doi.org/10.1186/1471-2105-12-480openalex-snapshot

GC-Content Normalization for RNA-Seq Data

inferredcites →https://doi.org/10.1186/gb-2000-1-2-reviews1011openalex-snapshot

Where does fission yeast sit on the tree of life?

inferredcites →https://doi.org/10.1186/gb-2013-14-4-r36openalex-snapshot

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

inferredcites →https://doi.org/10.1186/s13059-016-0881-8openalex-snapshot

A survey of best practices for RNA-seq data analysis

inferredcites →https://doi.org/10.1261/rna.051490.115openalex-snapshot

Relative contributions of the structural and catalytic roles of Rrp6 in exosomal degradation of individual mRNAs

inferredcites →https://doi.org/10.1371/journal.pbio.1000048openalex-snapshot

Comparative Functional Analysis of the Caenorhabditis elegans and Drosophila melanogaster Proteomes

inferredcites →https://doi.org/10.1371/journal.pgen.1004734openalex-snapshot

Metabolic Respiration Induces AMPK- and Ire1p-Dependent Activation of the p38-Type HOG MAPK Pathway

inferredcites →https://doi.org/10.1371/journal.pgen.1004999openalex-snapshot

The Exosome Component Rrp6 Is Required for RNA Polymerase II Termination at Specific Targets of the Nrd1-Nab3 Pathway

inferredcites →https://doi.org/10.1371/journal.pgen.1005206openalex-snapshot

Accounting for Experimental Noise Reveals That mRNA Levels, Amplified by Post-Transcriptional Processes, Largely Determine Steady-State Protein Levels in Yeast

inferredcites →https://doi.org/10.1371/journal.pone.0067590openalex-snapshot

Intracellular Water Exchange for Measuring the Dry Mass, Water Mass and Changes in Chemical Composition of Living Cells

inferredcites →https://doi.org/10.1515/9781400848065openalex-snapshot

The Princeton Guide to Evolution

inferredcites →https://doi.org/10.1515/9781400848065-058openalex-snapshot

V.7. Evolution of Gene Expression

inferredcites →https://doi.org/10.1534/g3.113.008995openalex-snapshot

The Reference Genome Sequence ofSaccharomyces cerevisiae: Then and Now

inferredcites →https://doi.org/10.1534/g3.116.034991openalex-snapshot

Time-Course Analysis of Gene Expression During theSaccharomyces cerevisiaeHypoxic Response

inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot

R: A Language and Environment for Statistical Computing

inferredcites →https://doi.org/10.4161/epi.27645openalex-snapshot

Set5 and Set1 cooperate to repress gene expression at telomeres and retrotransposons

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3389/fimmu.2021.689051openalex-snapshot

Individuality in the Immune Repertoire and Induced Response of the Sponge Halichondria panicea

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