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Broad geographic sampling reveals predictable, pervasive, and strong seasonal adaptation in Drosophila

https://doi.org/10.1101/337543
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Patterns of Genetic Polymorphism Maintained by Fluctuating Selection with Overlapping Generations
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Environmental fluctuations and the maintenance of genetic diversity in age or stage-structured populations
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Global Warming: Fly Populations Are Responding Rapidly to Climate Change
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Eco-physiological phases of insect diapause
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Rapid evolution as an ecological process
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The Drosophila melanogaster Genetic Reference Panel
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The genomic basis of adaptive evolution in threespine sticklebacks
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What genomic data can reveal about eco-evolutionary dynamics
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Ecology shapes epistasis in a genotype–phenotype–fitness map for stick insect colour
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Population genomics of Wolbachia and mtDNA in Drosophila simulans from California
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Upper thermal limits of Drosophila are linked to species distributions and strongly constrained phylogenetically
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Evolutionary tipping points in the capacity to adapt to environmental change
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Divergence of Drosophila melanogaster repeatomes in response to a sharp microclimate contrast in Evolution Canyon, Israel
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Causes of natural variation in fitness: Evidence from studies of Drosophila populations
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Seasonally fluctuating selection can maintain polymorphism at many loci via segregation lift
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Microbiome composition shapes rapid genomic adaptation of Drosophila melanogaster
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Estimating the genome-wide contribution of selection to temporal allele frequency change
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Genetic Variation in a Heterogeneous Environment VII. Temporal and Spatial Heterogeneity in Infinite Populations
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Long-Distance Migration of Drosophila. 3. Dispersal of D. melanogaster Alleles from a Maryland Orchard
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Role of Overlapping Generations in Maintaining Genetic Variation in a Fluctuating Environment
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Antagonistic Pleiotropy, Reversal of Dominance, and Genetic Polymorphism
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Thermal Tolerance in Widespread and Tropical Drosophila Species: Does Phenotypic Plasticity Increase with Latitude?
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Fast and accurate short read alignment with Burrows–Wheeler transform
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The Sequence Alignment/Map format and SAMtools
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The Limits to Estimating Population-Genetic Parameters with Temporal Data
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Genetic Variation Maintained in Multilocus Models of Additive Quantitative Traits Under Stabilizing Selection
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GENETICS OF NATURAL POPULATIONS IX. TEMPORAL CHANGES IN THE COMPOSITION OF POPULATIONS OF DROSOPHILA PSEUDOOBSCURA
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GENETICS OF NATURAL POPULATIONS. XVI. ALTITUDINAL AND SEASONAL CHANGES PRODUCED BY NATURAL SELECTION IN CERTAIN POPULATIONS OF DROSOPHILA PSEUDOOBSCURA AND DROSOPHILA PERSIMILIS
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CHROMOSOME STUDIES IN WILD POPULATIONS OF D. MELANOGASTER
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GENETIC VARIATION IN A HETEROGENEOUS ENVIRONMENT. II. TEMPORAL HETEROGENEITY AND DIRECTIONAL SELECTION
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CHROMOSOME STUDIES IN WILD POPULATIONS OF DROSOPHILA MELANOGASTER. II. RELATIONSHIP OF INVERSION FREQUENCIES TO LATITUDE, SEASON, WING-LOADING AND FLIGHT ACTIVITY
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Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA Viruses
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Massive Habitat-Specific Genomic Response in D. melanogaster Populations during Experimental Evolution in Hot and Cold Environments
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Genomic Evidence for Adaptive Inversion Clines inDrosophila melanogaster
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Genome-wide evolutionary response to a heat wave in Drosophila
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Variation inDrosophila melanogastercentral metabolic genes appears driven by natural selection both within and between populations
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Rapid seasonal evolution in innate immunity of wild Drosophila melanogaster
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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
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VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
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THE INTENSITY OF SELECTION ACTING ON THE COUCH POTATO GENE-SPATIAL-TEMPORAL VARIATION IN A DIAPAUSE CLINE
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A highly pleiotropic amino acid polymorphism in the Drosophila insulin receptor contributes to life-history adaptation
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Variability in thermal and phototactic preferences inDrosophilamay reflect an adaptive bet‐hedging strategy
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Different mechanisms drive the maintenance of polymorphism at loci subject to strong versus weak fluctuating selection
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ENVIRONMENTAL HETEROGENEITY AND THE MAINTENANCE OF GENETIC VARIATION FOR REPRODUCTIVE DIAPAUSE IN DROSOPHILA MELANOGASTER
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Cold adaptation in geographical populations of Drosophila melanogaster : phenotypic plasticity is more important than genetic variability
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Genome‐wide patterns of latitudinal differentiation among populations of D rosophila melanogaster from N orth A merica
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Adaptive topography of fluctuating selection in a Mendelian population
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FURTHER GENETIC STUDIES OF THE SOUTH AMHERST POPULATION OF DROSOPHILA MELANOGASTER
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A STRUCTURED COALESCENT PROCESS FOR SEASONALLY FLUCTUATING POPULATIONS
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Seasonal variation in life history traits in two Drosophila species
inferredcites →https://doi.org/10.1111/jeb.12988openalex-snapshot
Adaptive dynamics of cuticular hydrocarbons in Drosophila
inferredcites →https://doi.org/10.1111/mec.12468openalex-snapshot
Whole‐genome sequencing of two N orth A merican D rosophila melanogaster populations reveals genetic differentiation and positive selection
inferredcites →https://doi.org/10.1111/mec.13137openalex-snapshot
Population genomic analysis uncovers African and European admixture in Drosophila melanogaster populations from the south‐eastern United States and Caribbean Islands
inferredcites →https://doi.org/10.1111/mec.13446openalex-snapshot
Comparative population genomics of latitudinal variation in Drosophila simulans and Drosophila melanogaster
inferredcites →https://doi.org/10.1111/mec.14226openalex-snapshot
Gene flow and selection interact to promote adaptive divergence in regions of low recombination
inferredcites →https://doi.org/10.1111/mec.14814openalex-snapshot
Spatiotemporal dynamics and genome‐wide association analysis of desiccation tolerance in Drosophila melanogaster
inferredcites →https://doi.org/10.1111/mec.14871openalex-snapshot
The adaptive significance of chromosomal inversion polymorphisms inDrosophila melanogaster
inferredcites →https://doi.org/10.1111/mec.15783openalex-snapshot
Temperature, rainfall and wind variables underlie environmental adaptation in natural populations of Drosophila melanogaster
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Unpredictable Evolution in a 30-Year Study of Darwin's Finches
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The Newest Synthesis: Understanding the Interplay of Evolutionary and Ecological Dynamics
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A chromosomal inversion contributes to divergence in multiple traits between deer mouse ecotypes
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The Integrative Physiology of Insect Chill Tolerance
inferredcites →https://doi.org/10.1146/annurev.ento.47.091201.145137openalex-snapshot
Regulation of Diapause
inferredcites →https://doi.org/10.1146/annurev.es.24.110193.000343openalex-snapshot
Genetics and Evolution of Phenotypic Plasticity
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An Overview of the Global Historical Climatology Network-Daily Database
inferredcites →https://doi.org/10.1186/s13059-018-1503-4openalex-snapshot
A simple genetic basis of adaptation to a novel thermal environment results in complex metabolic rewiring in Drosophila
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Physiological climatic limits inDrosophila: patterns and implications
inferredcites →https://doi.org/10.1242/jeb.115790openalex-snapshot
Parallel ionoregulatory adjustments underlie phenotypic plasticity and evolution ofDrosophilacold tolerance
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Genetic redundancy fuels polygenic adaptation in Drosophila
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Evidence that Adaptation in Drosophila Is Not Limited by Mutation at Single Sites
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The Many Landscapes of Recombination in Drosophila melanogaster
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Population Genomics of Inversion Polymorphisms in Drosophila melanogaster
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Population Genomics of Sub-Saharan Drosophila melanogaster: African Diversity and Non-African Admixture
inferredcites →https://doi.org/10.1371/journal.pgen.1004775openalex-snapshot
Genomic Evidence of Rapid and Stable Adaptive Oscillations over Seasonal Time Scales in Drosophila
inferredcites →https://doi.org/10.1371/journal.pgen.1005869openalex-snapshot
The Adaptive Significance of Natural Genetic Variation in the DNA Damage Response of Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pgen.1007016openalex-snapshot
Genomics of parallel adaptation at two timescales in Drosophila
inferredcites →https://doi.org/10.1371/journal.pgen.1009110openalex-snapshot
Unique genetic signatures of local adaptation over space and time for diapause, an ecologically relevant complex trait, in Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pone.0041901openalex-snapshot
Empirical Validation of Pooled Whole Genome Population Re-Sequencing in Drosophila melanogaster
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LDx: Estimation of Linkage Disequilibrium from High-Throughput Pooled Resequencing Data
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Integrating Temperature-Dependent Life Table Data into a Matrix Projection Model for Drosophila suzukii Population Estimation
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Cutadapt removes adapter sequences from high-throughput sequencing reads
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Global Diversity Lines–A Five-Continent Reference Panel of SequencedDrosophila melanogasterStrains
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Quantitative Trait Loci Affecting Phenotypic Plasticity and the Allometric Relationship of Ovariole Number and Thorax Length in Drosophila melanogaster
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Using Environmental Correlations to Identify Loci Underlying Local Adaptation
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Genomic Differentiation Between Temperate and Tropical Australian Populations ofDrosophila melanogaster
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Robust Identification of Local Adaptation from Allele Frequencies
inferredcites →https://doi.org/10.1534/genetics.114.161463openalex-snapshot
Parallel Geographic Variation in Drosophila melanogaster

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Phenotypic plasticity, but not adaptive tracking, underlies seasonal variation in post‐cold hardening freeze tolerance of Drosophila melanogaster
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Population Genomics on the Fly: Recent Advances in Drosophila
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Evolutionary insights from large scale resequencing datasets in Drosophila melanogaster
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Demographic analyses of a new sample of haploid genomes from a Swedish population of Drosophila melanogaster
inferred← citeshttps://doi.org/10.1073/pnas.1907787116openalex-snapshot
Microbiome composition shapes rapid genomic adaptation of Drosophila melanogaster
inferred← citeshttps://doi.org/10.1073/pnas.1919039117openalex-snapshot
Estimating the genome-wide contribution of selection to temporal allele frequency change
inferred← citeshttps://doi.org/10.1093/gbe/evaa190openalex-snapshot
Reconstructing the Invasion Route of the P-Element inDrosophila melanogasterUsing Extant Population Samples
inferred← citeshttps://doi.org/10.1093/molbev/msaa227openalex-snapshot
Ecological Load and Balancing Selection in Circumboreal Barnacles
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Fluctuating Environments Maintain Genetic Diversity through Neutral Fitness Effects and Balancing Selection
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The discovery, distribution, and diversity of DNA viruses associated withDrosophila melanogasterin Europe
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The promise and deceit of genomic selection component analyses
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Unique signals of clinal and seasonal allele frequency change at eQTLs in Drosophila melanogaster
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Rapid evolution of learning and reproduction in natural populations of Drosophila melanogaster
inferred← citeshttps://doi.org/10.1101/313759openalex-snapshot
Genomic analysis of European Drosophila melanogaster populations reveals longitudinal structure, continent-wide selection, and previously unknown DNA viruses
inferred← citeshttps://doi.org/10.1101/321133openalex-snapshot
A map of climate change-driven natural selection in Arabidopsis thaliana
inferred← citeshttps://doi.org/10.1101/691741openalex-snapshot
Phenotypic plasticity, but not genetic adaptation, underlies seasonal variation in the cold hardening response of Drosophila melanogaster
inferred← citeshttps://doi.org/10.1101/729889openalex-snapshot
Reconstructing the invasion route of DNA transposons using extant population samples
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Common structuring principles of the Drosophila melanogaster microbiome on a continental scale and between host and substrate
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Different mechanisms drive the maintenance of polymorphism at loci subject to strong versus weak fluctuating selection
inferred← citeshttps://doi.org/10.1111/evo.13759openalex-snapshot
A clinal polymorphism in the insulin signaling transcription factor foxo contributes to life‐history adaptation in Drosophila *
inferred← citeshttps://doi.org/10.1111/evo.14300openalex-snapshot
Clinal and seasonal changes are correlated in Drosophila melanogaster natural populations
inferred← citeshttps://doi.org/10.1111/mec.14871openalex-snapshot
The adaptive significance of chromosomal inversion polymorphisms inDrosophila melanogaster
inferred← citeshttps://doi.org/10.1111/mec.14963openalex-snapshot
Population‐specific dynamics and selection patterns of transposable element insertions in European natural populations
inferred← citeshttps://doi.org/10.1111/mec.15939openalex-snapshot
Allelic polymorphism at foxo contributes to local adaptation in Drosophila melanogaster
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From tides to nucleotides: Genomic signatures of adaptation to environmental heterogeneity in barnacles
inferred← citeshttps://doi.org/10.1186/s12864-025-12111-wopenalex-snapshot
Long-read sequencing-based analyses of the adult Drosophila brain transcriptome in physiological and pathological settings
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Transposable elements in Drosophila
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Predicting evolutionary change at the DNA level in a natural Mimulus population
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Unique genetic signatures of local adaptation over space and time for diapause, an ecologically relevant complex trait, in Drosophila melanogaster
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Genomic Responses to Climate Change: Making the Most of the Drosophila Model
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Dynamique des éléments transposables chez Drosophila suzukii
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