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Population genomic analysis uncovers African and European admixture in Drosophila melanogaster populations from the south‐eastern United States and Caribbean Islands
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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From FastQ Data to High‐Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline
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Genetic variation of Drosophila melanogaster natural populations
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A Unified Approach to Genotype Imputation and Haplotype-Phase Inference for Large Data Sets of Trios and Unrelated Individuals
inferredcites →https://doi.org/10.1016/j.cub.2006.12.031openalex-snapshot
Drosophila melanogaster's history as a human commensal
inferredcites →https://doi.org/10.1016/j.tig.2008.04.007openalex-snapshot
Sex chromosomes and speciation in Drosophila
inferredcites →https://doi.org/10.1038/nature10811openalex-snapshot
The Drosophila melanogaster Genetic Reference Panel
inferredcites →https://doi.org/10.1038/ng.806openalex-snapshot
A framework for variation discovery and genotyping using next-generation DNA sequencing data
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1073/pnas.92.7.2519openalex-snapshot
Sexual isolation in Drosophila melanogaster: a possible case of incipient speciation.
inferredcites →https://doi.org/10.1086/521987openalex-snapshot
Rapid and Accurate Haplotype Phasing and Missing-Data Inference for Whole-Genome Association Studies By Use of Localized Haplotype Clustering
inferredcites →https://doi.org/10.1093/bioinformatics/btr330openalex-snapshot
The variant call format and VCFtools
inferredcites →https://doi.org/10.1093/bioinformatics/bts606openalex-snapshot
A high-performance computing toolset for relatedness and principal component analysis of SNP data
inferredcites →https://doi.org/10.1093/molbev/msg091openalex-snapshot
Genetic Differentiation Between American and European Drosophila melanogaster Populations Could Be Attributed to Admixture of African Alleles
inferredcites →https://doi.org/10.1093/oso/9780195076912.001.0001openalex-snapshot
Progress and Prospects in Evolutionary Biology
inferredcites →https://doi.org/10.1101/007765openalex-snapshot
Postmating reproductive barriers contribute to the incipient sexual isolation of US and Caribbean Drosophila melanogaster
inferredcites →https://doi.org/10.1101/gr.094052.109openalex-snapshot
Fast model-based estimation of ancestry in unrelated individuals
inferredcites →https://doi.org/10.1101/pdb.prot074187openalex-snapshot
A Cost-Effective Method for High-Throughput Construction of Illumina Sequencing Libraries
inferredcites →https://doi.org/10.1111/evo.12546openalex-snapshot
A highly pleiotropic amino acid polymorphism in the Drosophila insulin receptor contributes to life-history adaptation
inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04508.xopenalex-snapshot
Identification of a candidate adaptive polymorphism forDrosophilalife history by parallel independent clines on two continents
inferredcites →https://doi.org/10.1111/j.1471-8286.2005.01155.xopenalex-snapshot
genalex 6: genetic analysis in Excel. Population genetic software for teaching and research
inferredcites →https://doi.org/10.1111/j.1558-5646.1984.tb05657.xopenalex-snapshot
ESTIMATING F -STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE
inferredcites →https://doi.org/10.1111/j.1558-5646.1997.tb03965.xopenalex-snapshot
INCIPIENT SPECIATION BY SEXUAL ISOLATION INDROSOPHILA MELANOGASTER: VARIATION IN MATING PREFERENCE AND CORRELATION BETWEEN SEXES
inferredcites →https://doi.org/10.1111/j.1558-5646.2008.00351.xopenalex-snapshot
REPRODUCTIVE DIAPAUSE AND LIFE-HISTORY CLINES IN NORTH AMERICAN POPULATIONS OF DROSOPHILA MELANOGASTER
inferredcites →https://doi.org/10.1111/j.1558-5646.2008.00427.xopenalex-snapshot
INCIPIENT SEXUAL ISOLATION AMONG COSMOPOLITANDROSOPHILA MELANOGASTERPOPULATIONS
inferredcites →https://doi.org/10.1111/j.1558-5646.2008.00488.xopenalex-snapshot
AFRICAN MORPHOLOGY, BEHAVIOR AND PHERMONES UNDERLIE INCIPIENT SEXUAL ISOLATION BETWEEN US AND CARIBBEANDROSOPHILA MELANOGASTER
inferredcites →https://doi.org/10.1111/j.1558-5646.2012.01710.xopenalex-snapshot
GENOMIC BASIS OF AGING AND LIFE-HISTORY EVOLUTION IN DROSOPHILA MELANOGASTER
inferredcites →https://doi.org/10.1111/mec.12468openalex-snapshot
Whole‐genome sequencing of two N orth A merican D rosophila melanogaster populations reveals genetic differentiation and positive selection
inferredcites →https://doi.org/10.1111/mec.12796openalex-snapshot
Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow
inferredcites →https://doi.org/10.1111/mec.13455openalex-snapshot
Secondary contact and local adaptation contribute to genome‐wide patterns of clinal variation in Drosophila melanogaster
inferredcites →https://doi.org/10.1163/2468-1733_shafr_sim060120008openalex-snapshot
Westward Expansion: A History of the American Frontier. 6thed
inferredcites →https://doi.org/10.1186/1471-2105-11-485openalex-snapshot
SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data
inferredcites →https://doi.org/10.12688/f1000research.6090.1openalex-snapshot
Strain-specific and pooled genome sequences for populations of Drosophila melanogaster from three continents.
inferredcites →https://doi.org/10.1371/journal.pgen.0020166openalex-snapshot
Inferring the Demographic History and Rate of Adaptive Substitution in Drosophila
inferredcites →https://doi.org/10.1371/journal.pgen.1002453openalex-snapshot
Inference of Population Structure using Dense Haplotype Data
inferredcites →https://doi.org/10.1371/journal.pgen.1002905openalex-snapshot
The Many Landscapes of Recombination in Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pgen.1003056openalex-snapshot
Population Genomics of Inversion Polymorphisms in Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pgen.1003080openalex-snapshot
Population Genomics of Sub-Saharan Drosophila melanogaster: African Diversity and Non-African Admixture
inferredcites →https://doi.org/10.1371/journal.pone.0015925openalex-snapshot
PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals
inferredcites →https://doi.org/10.1534/genetics.104.027649openalex-snapshot
Single-Locus Latitudinal Clines and Their Relationship to Temperate Adaptation in Metabolic Genes and Derived Alleles in Drosophila melanogaster
inferredcites →https://doi.org/10.1534/genetics.110.117366openalex-snapshot
Patterns and Processes of Genome-Wide Divergence Between North American and AfricanDrosophila melanogaster
inferredcites →https://doi.org/10.1534/genetics.112.145912openalex-snapshot
Demographic Inference Reveals African and European Admixture in the North AmericanDrosophila melanogasterPopulation
inferredcites →https://doi.org/10.1534/genetics.112.147330openalex-snapshot
Inferring Admixture Histories of Human Populations Using Linkage Disequilibrium
inferredcites →https://doi.org/10.2307/1792839openalex-snapshot
Westward Expansion: A History of the American Frontier
inferredcites →https://doi.org/10.5281/zenodo.10763570openalex-snapshot
Progress and Prospects in Evolutionary Biology. The Drosophila Model.
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1002/ece3.1596openalex-snapshot
Postmating reproductive barriers contribute to the incipient sexual isolation of the United States and Caribbean Drosophila melanogaster
inferred← citeshttps://doi.org/10.1002/ece3.1599openalex-snapshot
Adaptive plasticity and niche expansion in an invasive thistle
inferred← citeshttps://doi.org/10.1002/ece3.5887openalex-snapshot
Phenotypic plasticity, but not adaptive tracking, underlies seasonal variation in post‐cold hardening freeze tolerance of Drosophila melanogaster
inferred← citeshttps://doi.org/10.1007/978-1-0716-0199-0_15openalex-snapshot
Population Genomics on the Fly: Recent Advances in Drosophila
inferred← citeshttps://doi.org/10.1016/j.cois.2018.11.002openalex-snapshot
Evolutionary insights from large scale resequencing datasets in Drosophila melanogaster
inferred← citeshttps://doi.org/10.1016/j.jinsphys.2017.01.015openalex-snapshot
Geographical analysis of diapause inducibility in European Drosophila melanogaster populations
inferred← citeshttps://doi.org/10.1016/j.tig.2015.05.006openalex-snapshot
Revisiting classic clines in Drosophila melanogaster in the age of genomics
inferred← citeshttps://doi.org/10.1016/j.tig.2015.12.003openalex-snapshot
The Power of Natural Variation for Model Organism Biology
inferred← citeshttps://doi.org/10.1038/s41437-021-00419-8openalex-snapshot
Low levels of genetic differentiation with isolation by geography and environment in populations of Drosophila melanogaster from across China
inferred← citeshttps://doi.org/10.1038/s41437-025-00780-yopenalex-snapshot
Multiple forms of balancing selection maintain inversion polymorphism
inferred← citeshttps://doi.org/10.1038/s41598-018-34267-0openalex-snapshot
Genome-wide patterns of local adaptation in Western European Drosophila melanogaster natural populations
inferred← citeshttps://doi.org/10.1038/s41598-020-79720-1openalex-snapshot
Demographic analyses of a new sample of haploid genomes from a Swedish population of Drosophila melanogaster
inferred← citeshttps://doi.org/10.1038/sdata.2017.66openalex-snapshot
A resource on latitudinal and altitudinal clines of ecologically relevant phenotypes of the Indian Drosophila
inferred← citeshttps://doi.org/10.1038/srep42766openalex-snapshot
On the Long-term Stability of Clines in Some Metabolic Genes in Drosophila melanogaster
inferred← citeshttps://doi.org/10.1093/gbe/evaa103openalex-snapshot
Fine-Scale Position Effects Shape the Distribution of Inversion Breakpoints in Drosophila melanogaster
inferred← citeshttps://doi.org/10.1093/gbe/evag097openalex-snapshot
Cryptic Diversity and Impacts of Domestication in the Black Soldier Fly ( Hermetia illucens ) Genome
inferred← citeshttps://doi.org/10.1093/gbe/evy185openalex-snapshot
The Demographic History of African Drosophila melanogaster
inferred← citeshttps://doi.org/10.1093/gbe/evz022openalex-snapshot
Demographic History of the Human CommensalDrosophila melanogaster
inferred← citeshttps://doi.org/10.1093/genetics/iyad034openalex-snapshot
Selection and geography shape male reproductive tract transcriptomes in Drosophila melanogaster
inferred← citeshttps://doi.org/10.1093/jeb/voad018openalex-snapshot
Geographic and seasonal variation of theforgene reveal signatures of local adaptation inDrosophila melanogaster
inferred← citeshttps://doi.org/10.1093/jeb/voae074openalex-snapshot
The neurodevelopmental genes alan shepard and Neuroglian contribute to female mate preference in African Drosophila melanogaster
inferred← citeshttps://doi.org/10.1093/molbev/msaa120openalex-snapshot
Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA Viruses
inferred← citeshttps://doi.org/10.1093/molbev/msab259openalex-snapshot
Drosophila Evolution over Space and Time (DEST): A New Population Genomics Resource
inferred← citeshttps://doi.org/10.1093/molbev/msab368openalex-snapshot
A Population Genomic Assessment of Three Decades of Evolution in a Natural Drosophila Population
inferred← citeshttps://doi.org/10.1093/molbev/msac122openalex-snapshot
Interactions Between Natural Selection and Recombination Shape the Genomic Landscape of Introgression
inferred← citeshttps://doi.org/10.1093/molbev/msac223openalex-snapshot
Patterns of Population Structure and Introgression Among Recently Differentiated Drosophila melanogaster Populations
inferred← citeshttps://doi.org/10.1093/molbev/msaf132openalex-snapshot
Footprints of Worldwide Adaptation in Structured Populations of Drosophila melanogaster Through the Expanded DEST 2.0 Genomic Resource
inferred← citeshttps://doi.org/10.1093/molbev/msv194openalex-snapshot
The Mosaic Ancestry of the Drosophila Genetic Reference Panel and the D. melanogaster Reference Genome Reveals a Network of Epistatic Fitness Interactions
inferred← citeshttps://doi.org/10.1093/molbev/msv263openalex-snapshot
Global Transcriptional Profiling of Diapause and Climatic Adaptation inDrosophila melanogaster
inferred← citeshttps://doi.org/10.1093/molbev/msw014openalex-snapshot
Parallel Evolution of Copy-Number Variation across Continents inDrosophila melanogaster
inferred← citeshttps://doi.org/10.1093/molbev/msw016openalex-snapshot
Genomic Evidence for Adaptive Inversion Clines inDrosophila melanogaster
inferred← citeshttps://doi.org/10.1093/molbev/msw195openalex-snapshot
A Thousand Fly Genomes: An Expanded Drosophila Genome Nexus
inferred← citeshttps://doi.org/10.1093/molbev/msw232openalex-snapshot
Parallel Evolution of Cold Tolerance Within Drosophila melanogaster
inferred← citeshttps://doi.org/10.1093/ve/veab031openalex-snapshot
The discovery, distribution, and diversity of DNA viruses associated withDrosophila melanogasterin Europe
inferred← citeshttps://doi.org/10.1101/007765openalex-snapshot
Postmating reproductive barriers contribute to the incipient sexual isolation of US and Caribbean Drosophila melanogaster
inferred← citeshttps://doi.org/10.1101/2020.10.23.352732openalex-snapshot
Florida Drosophila melanogaster genomes sampled 13 years apart show increases in warm-associated SNP alleles
inferred← citeshttps://doi.org/10.1101/2021.06.25.449842openalex-snapshot
Patterns of and processes shaping population structure and introgression among recently differentiated Drosophila melanogaster populations
inferred← citeshttps://doi.org/10.1101/2023.02.19.529142openalex-snapshot
Geographic and seasonal variation of the for gene reveal signatures of local adaptation in Drosophila melanogaster
inferred← citeshttps://doi.org/10.1101/2024.11.10.622744openalex-snapshot
Footprints of worldwide adaptation in structured populations of D. melanogaster through the expanded DEST 2.0 genomic resource
inferred← citeshttps://doi.org/10.1101/2025.11.28.691231openalex-snapshot
Gene flow erodes spatial genomic clines while selection preserves adaptive loci over hundreds of generations
inferred← citeshttps://doi.org/10.1101/313759openalex-snapshot
Genomic analysis of European Drosophila melanogaster populations reveals longitudinal structure, continent-wide selection, and previously unknown DNA viruses
inferred← citeshttps://doi.org/10.1101/337543openalex-snapshot
Broad geographic sampling reveals predictable, pervasive, and strong seasonal adaptation in Drosophila
inferred← citeshttps://doi.org/10.1101/340422openalex-snapshot
Early split between African and European populations of Drosophila melanogaster
inferred← citeshttps://doi.org/10.1101/691741openalex-snapshot
Phenotypic plasticity, but not genetic adaptation, underlies seasonal variation in the cold hardening response of Drosophila melanogaster
inferred← citeshttps://doi.org/10.1111/1755-0998.12577openalex-snapshot
Linking genomics and population genetics with R
inferred← citeshttps://doi.org/10.1111/evo.13144openalex-snapshot
Adaptive patterns of phenotypic plasticity in laboratory and field environments in Drosophila melanogaster
inferred← citeshttps://doi.org/10.1111/evo.13759openalex-snapshot
A clinal polymorphism in the insulin signaling transcription factor foxo contributes to life‐history adaptation in Drosophila *
inferred← citeshttps://doi.org/10.1111/evo.14300openalex-snapshot
Clinal and seasonal changes are correlated in Drosophila melanogaster natural populations
inferred← citeshttps://doi.org/10.1111/jeb.12847openalex-snapshot
Parallel effects of the inversion In(3R)Payne on body size across the North American and Australian clines in Drosophila melanogaster
inferred← citeshttps://doi.org/10.1111/mec.13446openalex-snapshot
Comparative population genomics of latitudinal variation in Drosophila simulans and Drosophila melanogaster
inferred← citeshttps://doi.org/10.1111/mec.13455openalex-snapshot
Secondary contact and local adaptation contribute to genome‐wide patterns of clinal variation in Drosophila melanogaster
inferred← citeshttps://doi.org/10.1111/mec.13534openalex-snapshot
Genomics of clinal variation in Drosophila: disentangling the interactions of selection and demography
inferred← citeshttps://doi.org/10.1111/mec.14814openalex-snapshot
Spatiotemporal dynamics and genome‐wide association analysis of desiccation tolerance in Drosophila melanogaster
inferred← citeshttps://doi.org/10.1111/mec.14961openalex-snapshot
Patterns of transposable element variation and clinality in Drosophila
inferred← citeshttps://doi.org/10.1111/mec.15939openalex-snapshot
Allelic polymorphism at foxo contributes to local adaptation in Drosophila melanogaster
inferred← citeshttps://doi.org/10.1111/phen.12443openalex-snapshot
Improvement of starvation resistance via periodic fasting is genetically variable in Drosophila melanogaster
inferred← citeshttps://doi.org/10.1126/sciadv.adh3425openalex-snapshot
From sub-Saharan Africa to China: Evolutionary history and adaptation of Drosophila melanogaster revealed by population genomics
inferred← citeshttps://doi.org/10.11606/d.41.2019.tde-26112018-153816openalex-snapshot
Adaptive or neutral clines? Integrating genome-wide clinal and seasonal variation to infer natural selection in Drosophila melanogaster
inferred← citeshttps://doi.org/10.11606/d.41.2025.tde-13062025-173146openalex-snapshot
Acompanhando a evolução de clinas genômicas em Drosophila melanogaster por meio de amostragens históricas
inferred← citeshttps://doi.org/10.1186/s12862-017-0873-7openalex-snapshot
Variation in rates of spontaneous male production within the nematode species Pristionchus pacificus supports an adaptive role for males and outcrossing
inferred← citeshttps://doi.org/10.1186/s12864-016-3333-7openalex-snapshot
Latitudinal clines in gene expression and cis-regulatory element variation in Drosophila melanogaster
inferred← citeshttps://doi.org/10.1371/journal.pgen.1007741openalex-snapshot
Deleterious variation shapes the genomic landscape of introgression
inferred← citeshttps://doi.org/10.1371/journal.pgen.1009110openalex-snapshot
Unique genetic signatures of local adaptation over space and time for diapause, an ecologically relevant complex trait, in Drosophila melanogaster
inferred← citeshttps://doi.org/10.1371/journal.pone.0294521openalex-snapshot
Population genomics provides insights into the genetic diversity and adaptation of the Pieris rapae in China
inferred← citeshttps://doi.org/10.14288/1.0166509openalex-snapshot
Ecological genomics of invasive thistle, diffuse knapweed
inferred← citeshttps://doi.org/10.1534/genetics.116.187120openalex-snapshot
Moving Speciation Genetics Forward: Modern Techniques Build on Foundational Studies in Drosophila
inferred← citeshttps://doi.org/10.1534/genetics.116.190223openalex-snapshot
Effects of Linked Selective Sweeps on Demographic Inference and Model Selection
inferred← citeshttps://doi.org/10.1534/genetics.116.196493openalex-snapshot
Molecular Population Genetics
inferred← citeshttps://doi.org/10.1534/genetics.117.300583openalex-snapshot
Phylogeny of the Genus Drosophila
inferred← citeshttps://doi.org/10.1534/genetics.118.301411openalex-snapshot
Estimating the Timing of Multiple Admixture Pulses During Local Ancestry Inference
inferred← citeshttps://doi.org/10.1590/1678-4685-gmb-2023-0348openalex-snapshot
Clinal variation in natural populations of Drosophila melanogaster: An old debate about natural selection and neutral processes
inferred← citeshttps://doi.org/10.1590/1678-4685-gmb-2025-0246openalex-snapshot
Global patterns, biases, and advances in phylogeographic and genetic structure studies in Drosophilidae (Insecta: Diptera)
inferred← citeshttps://doi.org/10.5539/ijb.v12n2p41openalex-snapshot
Evidence for Initiation of Post-Zygotic Reproductive Isolation between Drosophila ananassae and D. pallidosa as Indicated by Reduction in the Fertility of Hybrid Males
inferred← citeshttps://doi.org/10.5539/ijb.v12n2p52openalex-snapshot
Studies on Mating Preference and Productivity in Drosophila ananassae and D. pallidosa and Their Hybrids
inferred← citeshttps://doi.org/10.64898/2026.06.12.731834openalex-snapshot
Microbial profiling of Drosophila in French Guiana reveals candidate microbial taxa associated with native and invasive host
inferred← citeshttps://doi.org/10.7282/t3m61ndcopenalex-snapshot
Insights Into evolution and adaptation using computational methods and next generation sequencing
inferred← citeshttps://doi.org/10.7554/elife.67577openalex-snapshot
Broad geographic sampling reveals the shared basis and environmental correlates of seasonal adaptation in Drosophila
inferred← citeshttps://doi.org/10.7554/elife.85249openalex-snapshot
Expansion and loss of sperm nuclear basic protein genes in Drosophila correspond with genetic conflicts between sex chromosomes
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