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Searching for sympatric speciation in the genomic era

https://doi.org/10.1101/367623
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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ece3.2287openalex-snapshot
Incipient sympatric speciation in Midas cichlid fish from the youngest and one of the smallest crater lakes in Nicaragua due to differential use of the benthic and limnetic habitats?
inferredcites →https://doi.org/10.1002/evl3.37openalex-snapshot
Ancient genomic variation underlies repeated ecological adaptation in young stickleback populations
inferredcites →https://doi.org/10.1002/evl3.46openalex-snapshot
Comparative analysis examining patterns of genomic differentiation across multiple episodes of population divergence in birds
inferredcites →https://doi.org/10.1007/s00239-006-0261-1openalex-snapshot
The Variance of Coalescent Time Estimates from DNA Sequences
inferredcites →https://doi.org/10.1007/s00265-010-1125-7openalex-snapshot
Adaptive speciation theory: a conceptual review
inferredcites →https://doi.org/10.1016/j.cell.2017.05.038openalex-snapshot
An Expanded View of Complex Traits: From Polygenic to Omnigenic
inferredcites →https://doi.org/10.1016/j.jtbi.2006.01.009openalex-snapshot
Multi-species outcomes in a common model of sympatric speciation
inferredcites →https://doi.org/10.1016/j.tpb.2014.11.001openalex-snapshot
A hidden Markov model for investigating recent positive selection through haplotype structure
inferredcites →https://doi.org/10.1016/j.tree.2004.01.003openalex-snapshot
Hybridization and adaptive radiation
inferredcites →https://doi.org/10.1016/j.tree.2011.01.001openalex-snapshot
The genes underlying the process of speciation
inferredcites →https://doi.org/10.1016/j.tree.2011.04.005openalex-snapshot
Magic traits in speciation: ‘magic’ but not rare?
inferredcites →https://doi.org/10.1016/j.tree.2017.11.003openalex-snapshot
Sympatric Speciation in the Genomic Era
inferredcites →https://doi.org/10.1016/s0169-5347(01)02177-2openalex-snapshot
Theory and speciation
inferredcites →https://doi.org/10.1016/s1055-7903(03)00225-2openalex-snapshot
Molecular phylogeny and biogeography of the Malagasy and South Asian cichlids (Teleostei: Perciformes: Cichlidae)
inferredcites →https://doi.org/10.1017/s0016672300014634openalex-snapshot
The hitch-hiking effect of a favourable gene
inferredcites →https://doi.org/10.1038/22521openalex-snapshot
On the origin of species by sympatric speciation
inferredcites →https://doi.org/10.1038/368629a0openalex-snapshot
Sympatric speciation suggested by monophyly of crater lake cichlids
inferredcites →https://doi.org/10.1038/nature01863openalex-snapshot
Speciation by host switch in brood parasitic indigobirds
inferredcites →https://doi.org/10.1038/nature04325openalex-snapshot
Sympatric speciation in Nicaraguan crater lake cichlid fish
inferredcites →https://doi.org/10.1038/nature04566openalex-snapshot
Sympatric speciation in palms on an oceanic island
inferredcites →https://doi.org/10.1038/nature13408openalex-snapshot
Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA
inferredcites →https://doi.org/10.1038/ncomms14363openalex-snapshot
Ancient hybridization fuels rapid cichlid fish adaptive radiations
inferredcites →https://doi.org/10.1038/ncomms5105openalex-snapshot
Mesoporous silicon sponge as an anti-pulverization structure for high-performance lithium-ion battery anodes
inferredcites →https://doi.org/10.1038/ncomms5248openalex-snapshot
Adaptive introgression between Anopheles sibling species eliminates a major genomic island but not reproductive isolation
inferredcites →https://doi.org/10.1038/ng.937openalex-snapshot
Bayesian inference of ancient human demography from individual genome sequences
inferredcites →https://doi.org/10.1038/nrg1269openalex-snapshot
Genes and speciation
inferredcites →https://doi.org/10.1038/sj.hdy.6886170openalex-snapshot
Transgressive segregation, adaptation and speciation
inferredcites →https://doi.org/10.1046/j.1420-9101.2001.00335.xopenalex-snapshot
The genic view of the process of speciation
inferredcites →https://doi.org/10.1073/pnas.1713288114openalex-snapshot
Ancient polymorphisms and divergence hitchhiking contribute to genomic islands of divergence within a poplar species complex
inferredcites →https://doi.org/10.1073/pnas.1730757100openalex-snapshot
Allopatric genetic origins for sympatric host-plant shifts and race formation in Rhagoletis
inferredcites →https://doi.org/10.1086/338370openalex-snapshot
Speciation by Natural and Sexual Selection: Models and Experiments
inferredcites →https://doi.org/10.1086/499375openalex-snapshot
Intraspecific Competitive Divergence and Convergence under Assortative Mating
inferredcites →https://doi.org/10.1086/667215openalex-snapshot
Revisiting Santa Rosalia to Unfold a Degeneracy of Classic Models of Speciation
inferredcites →https://doi.org/10.1086/667586openalex-snapshot
Weak Disruptive Selection and Incomplete Phenotypic Divergence in Two Classic Examples of Sympatric Speciation: Cameroon Crater Lake Cichlids
inferredcites →https://doi.org/10.1086/693855openalex-snapshot
The Roles of Sexual and Viability Selection in the Evolution of Incomplete Reproductive Isolation: From Allopatry to Sympatry
inferredcites →https://doi.org/10.1086/694889openalex-snapshot
Mechanisms of Assortative Mating in Speciation with Gene Flow: Connecting Theory and Empirical Research
inferredcites →https://doi.org/10.1093/biolinnean/bly063openalex-snapshot
What is Speciation Genomics? The roles of ecology, gene flow, and genomic architecture in the formation of species
inferredcites →https://doi.org/10.1093/jhered/esu045openalex-snapshot
Models of Speciation: Where Are We Now?
inferredcites →https://doi.org/10.1093/molbev/msn091openalex-snapshot
The Timing of Selection at the Human FOXP2 Gene
inferredcites →https://doi.org/10.1093/molbev/mss207openalex-snapshot
The Timing of Pigmentation Lightening in Europeans
inferredcites →https://doi.org/10.1093/molbev/msv256openalex-snapshot
Estimating the Ages of Selection Signals from Different Epochs in Human History
inferredcites →https://doi.org/10.1093/molbev/msw286openalex-snapshot
Novel candidate genes underlying extreme trophic specialization in Caribbean pupfishes
inferredcites →https://doi.org/10.1093/molbev/msy006openalex-snapshot
Estimating Time to the Common Ancestor for a Beneficial Allele
inferredcites →https://doi.org/10.1098/rspb.2006.3539openalex-snapshot
African cichlid fish: a model system in adaptive radiation research
inferredcites →https://doi.org/10.1098/rspb.2015.1666openalex-snapshot
Introgressive hybridization facilitates adaptive divergence in a recent radiation of monkeyflowers
inferredcites →https://doi.org/10.1098/rstb.2011.0249openalex-snapshot
Recombination rate variation and speciation: theoretical predictions and empirical results from rabbits and mice
inferredcites →https://doi.org/10.1101/217984openalex-snapshot
Don’t throw out the sympatric species with the crater lake water: fine-scale investigation of introgression provides weak support for functional role of secondary gene flow in one of the clearest examples of sympatric speciation
inferredcites →https://doi.org/10.1101/gr.3715005openalex-snapshot
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
inferredcites →https://doi.org/10.1111/ele.12260openalex-snapshot
Cichlid species‐area relationships are shaped by adaptive radiations that scale with area
inferredcites →https://doi.org/10.1111/ele.12891openalex-snapshot
Hybridization can promote adaptive radiation by means of transgressive segregation
inferredcites →https://doi.org/10.1111/evo.12399openalex-snapshot
HOW COMMON IS HOMOPLOID HYBRID SPECIATION?
inferredcites →https://doi.org/10.1111/evo.12587openalex-snapshot
A comparative analysis of island floras challenges taxonomy‐based biogeographical models of speciation
inferredcites →https://doi.org/10.1111/evo.12674openalex-snapshot
Complex histories of repeated gene flow in Cameroon crater lake cichlids cast doubt on one of the clearest examples of sympatric speciation
inferredcites →https://doi.org/10.1111/evo.12832openalex-snapshot
Irrational exuberance for resolved species trees
inferredcites →https://doi.org/10.1111/evo.13046openalex-snapshot
The cryptic origins of evolutionary novelty: 1000-fold faster trophic diversification rates without increased ecological opportunity or hybrid swarm
inferredcites →https://doi.org/10.1111/evo.13252openalex-snapshot
Divergence and evolution of assortative mating in a polygenic trait model of speciation with gene flow
inferredcites →https://doi.org/10.1111/j.1365-294x.2007.03305.xopenalex-snapshot
Case studies and mathematical models of ecological speciation. 1. Cichlids in a crater lake
inferredcites →https://doi.org/10.1111/j.1420-9101.2008.01547.xopenalex-snapshot
Competitive speciation and costs of choosiness
inferredcites →https://doi.org/10.1111/j.1420-9101.2008.01611.xopenalex-snapshot
What, if anything, is sympatric speciation?
inferredcites →https://doi.org/10.1111/j.1420-9101.2009.01816.xopenalex-snapshot
Space, sympatry and speciation
inferredcites →https://doi.org/10.1111/j.1420-9101.2009.01833.xopenalex-snapshot
Pattern, process and geographic modes of speciation
inferredcites →https://doi.org/10.1111/j.1558-5646.1981.tb04864.xopenalex-snapshot
SKEPTICISM TOWARDS SANTA ROSALIA, OR WHY ARE THERE SO FEW KINDS OF ANIMALS?
inferredcites →https://doi.org/10.1111/j.1558-5646.2009.00612.xopenalex-snapshot
CONTRASTING PATTERNS OF SPATIAL GENETIC STRUCTURE IN SYMPATRIC ROCK-DWELLING CICHLID FISHES
inferredcites →https://doi.org/10.1111/j.1558-5646.2009.00786.xopenalex-snapshot
CHROMOSOMAL INVERSIONS AND SPECIES DIFFERENCES: WHEN ARE GENES AFFECTING ADAPTIVE DIVERGENCE AND REPRODUCTIVE ISOLATION EXPECTED TO RESIDE WITHIN INVERSIONS?
inferredcites →https://doi.org/10.1111/jeb.12026openalex-snapshot
Conditions when hybridization might predispose populations for adaptive radiation
inferredcites →https://doi.org/10.1111/jeb.13047openalex-snapshot
Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow
inferredcites →https://doi.org/10.1111/mec.12415openalex-snapshot
Adaptive introgression in animals: examples and comparison to new mutation and standing variation as sources of adaptive variation
inferredcites →https://doi.org/10.1111/mec.12796openalex-snapshot
Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow
inferredcites →https://doi.org/10.1111/mec.13478openalex-snapshot
Inferring the age of a fixed beneficial allele
inferredcites →https://doi.org/10.1111/mec.13611openalex-snapshot
The evolution of genomic islands by increased establishment probability of linked alleles
inferredcites →https://doi.org/10.1111/mec.14083openalex-snapshot
Correlated patterns of genetic diversity and differentiation across an avian family
inferredcites →https://doi.org/10.1111/mec.14195openalex-snapshot
Genomewide patterns of variation in genetic diversity are shared among populations, species and higher‐order taxa
inferredcites →https://doi.org/10.1111/mec.14290openalex-snapshot
Speciation as a sieve for ancestral polymorphism
inferredcites →https://doi.org/10.1111/mec.14784openalex-snapshot
Speciation in sympatry with ongoing secondary gene flow and a potential olfactory trigger in a radiation of Cameroon cichlids
inferredcites →https://doi.org/10.1111/nph.13392openalex-snapshot
Genome‐wide patterns of differentiation and spatially varying selection between postglacial recolonization lineages ofPopulus alba(Salicaceae), a widespread forest tree
inferredcites →https://doi.org/10.1126/science.1121260openalex-snapshot
Evidence for a One-Allele Assortative Mating Locus
inferredcites →https://doi.org/10.1126/science.1245938openalex-snapshot
Resurrecting Surviving Neandertal Lineages from Modern Human Genomes
inferredcites →https://doi.org/10.1126/science.1258522openalex-snapshot
Highly evolvable malaria vectors: The genomes of 16 Anopheles mosquitoes
inferredcites →https://doi.org/10.1126/science.aac9927openalex-snapshot
Genomic islands of speciation separate cichlid ecomorphs in an East African crater lake
inferredcites →https://doi.org/10.1146/annurev-ecolsys-110316-022905openalex-snapshot
The Role of Sexual Selection in Local Adaptation and Speciation
inferredcites →https://doi.org/10.1146/annurev-genom-091416-035537openalex-snapshot
Gene Regulatory Elements, Major Drivers of Human Disease
inferredcites →https://doi.org/10.1146/annurev.ecolsys.38.091206.095804openalex-snapshot
Sympatric Speciation: Models and Empirical Evidence
inferredcites →https://doi.org/10.1146/annurev.es.06.110175.002011openalex-snapshot
Modes of Animal Speciation
inferredcites →https://doi.org/10.1186/1471-2148-10-326openalex-snapshot
Phylogeography, colonization and population history of the Midas cichlid species complex (Amphilophus spp.) in the Nicaraguan crater lakes
inferredcites →https://doi.org/10.1186/1741-7007-8-60openalex-snapshot
Rapid sympatric ecological differentiation of crater lake cichlid fishes within historic times
inferredcites →https://doi.org/10.1186/s12861-015-0059-8openalex-snapshot
Reversible regulation of stem cell niche size associated with dietary control of Notch signalling
inferredcites →https://doi.org/10.1186/s12861-017-0157-xopenalex-snapshot
Tol2 transposon-mediated transgenesis in the Midas cichlid (Amphilophus citrinellus) — towards understanding gene function and regulatory evolution in an ecological model system for rapid phenotypic diversification
inferredcites →https://doi.org/10.1186/s12862-015-0287-3openalex-snapshot
Parallel evolution in Ugandan crater lakes: repeated evolution of limnetic body shapes in haplochromine cichlid fish
inferredcites →https://doi.org/10.1371/journal.pgen.1000695openalex-snapshot
Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data
inferredcites →https://doi.org/10.1371/journal.pgen.1003905openalex-snapshot
Robust Demographic Inference from Genomic and SNP Data
inferredcites →https://doi.org/10.1371/journal.pgen.1005944openalex-snapshot
Glucocerebrosidase Deficiency in Drosophila Results in α-Synuclein-Independent Protein Aggregation and Neurodegeneration
inferredcites →https://doi.org/10.1371/journal.pgen.1006563openalex-snapshot
Evolutionary analysis reveals regulatory and functional landscape of coding and non-coding RNA editing
inferredcites →https://doi.org/10.1371/journal.pgen.1006971openalex-snapshot
Fine scale mapping of genomic introgressions within the Drosophila yakuba clade
inferredcites →https://doi.org/10.1371/journal.pgen.1007449openalex-snapshot
An intronic enhancer of Bmp6 underlies evolved tooth gain in sticklebacks
inferredcites →https://doi.org/10.1371/journal.pgen.1007526openalex-snapshot
Ancestral polymorphisms explain the role of chromosomal inversions in speciation
inferredcites →https://doi.org/10.1371/journal.pone.0054583openalex-snapshot
Positive Outcomes Influence the Rate and Time to Publication, but Not the Impact Factor of Publications of Clinical Trial Results
inferredcites →https://doi.org/10.1515/9780691187051openalex-snapshot
Fitness Landscapes and the Origin of Species (MPB-41)
inferredcites →https://doi.org/10.1534/genetics.105.047985openalex-snapshot
Chromosome Inversions, Local Adaptation and Speciation
inferredcites →https://doi.org/10.1534/genetics.107.084418openalex-snapshot
Frequency-Dependent Selection and the Evolution of Assortative Mating
inferredcites →https://doi.org/10.1534/genetics.112.147330openalex-snapshot
Inferring Admixture Histories of Human Populations Using Linkage Disequilibrium
inferredcites →https://doi.org/10.1554/04-154openalex-snapshot
WHAT WE HAVE ALSO LEARNED: ADAPTIVE SPECIATION IS THEORETICALLY PLAUSIBLE
inferredcites →https://doi.org/10.1556/select.2.2001.1-2.3openalex-snapshot
Ecological versus Sexual Selection Models of Sympatric Speciation: A Synthesis
inferredcites →https://doi.org/10.1556/select.2.2001.1-2.4openalex-snapshot
Long-term Buildup of Reproductive Isolation Promoted by Disruptive Selection: How Far Does it Go?
inferredcites →https://doi.org/10.3390/genes9040191openalex-snapshot
Genomic Signatures of Reinforcement
inferredcites →https://doi.org/10.3390/genes9040217openalex-snapshot
The Effects on Parapatric Divergence of Linkage between Preference and Trait Loci versus Pleiotropy
inferredcites →https://doi.org/10.4159/harvard.9780674865327openalex-snapshot
Animal Species and Evolution

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/ece3.11640openalex-snapshot
Parallel evolution of integrated craniofacial traits in trophic specialist pupfishes
inferred← citeshttps://doi.org/10.1016/j.ympev.2025.108452openalex-snapshot
Phylogenetic reconstruction of African weakly electric fish (Campylomormyrus spp.) is suggestive of ancient introgression events
inferred← citeshttps://doi.org/10.1093/molbev/msz259openalex-snapshot
Divergent Selection and Primary Gene Flow Shape Incipient Speciation of a Riparian Tree on Hawaii Island
inferred← citeshttps://doi.org/10.1146/annurev-ecolsys-110617-062443openalex-snapshot
The Paradox Behind the Pattern of Rapid Adaptive Radiation: How Can the Speciation Process Sustain Itself Through an Early Burst?
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