On the public citation graph
Pan-cancer whole genome analyses of metastatic solid tumors
0 signed · 112 inferred · view as graph
Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.
Is this your work? Sign in with ORCID and put your name on the
claims that are yours.
Reference health. See whether every reference in this work resolves to a
known work and none has been retracted — and get a dated CiteStamped
badge you can embed.
What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/0471250953.bi1110s43openalex-snapshot
From FastQ Data to High‐Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline
inferredcites →https://doi.org/10.1002/gcc.2870080306openalex-snapshot
Y chromosome loss in esophageal carcinoma: An in situ hybridization study
inferredcites →https://doi.org/10.1007/s10549-017-4139-2openalex-snapshot
Amplification of SOX4 promotes PI3K/Akt signaling in human breast cancer
inferredcites →https://doi.org/10.1016/0165-4608(95)00030-sopenalex-snapshot
Y chromosome loss detected by FISH in bladder cancer
inferredcites →https://doi.org/10.1016/j.ccell.2016.04.003openalex-snapshot
Loss of Chromosome 8p Governs Tumor Progression and Drug Response by Altering Lipid Metabolism
inferredcites →https://doi.org/10.1016/j.ccell.2017.07.005openalex-snapshot
Genomic Evolution of Breast Cancer Metastasis and Relapse
inferredcites →https://doi.org/10.1016/j.ccell.2018.03.007openalex-snapshot
Genomic and Functional Approaches to Understanding Cancer Aneuploidy
inferredcites →https://doi.org/10.1016/j.cell.2013.09.034openalex-snapshot
The Somatic Genomic Landscape of Glioblastoma
inferredcites →https://doi.org/10.1016/j.cell.2013.10.011openalex-snapshot
Cumulative Haploinsufficiency and Triplosensitivity Drive Aneuploidy Patterns and Shape the Cancer Genome
inferredcites →https://doi.org/10.1016/j.cell.2016.12.015openalex-snapshot
Implementing Genome-Driven Oncology
inferredcites →https://doi.org/10.1016/j.cell.2017.01.018openalex-snapshot
Clonal Heterogeneity and Tumor Evolution: Past, Present, and the Future
inferredcites →https://doi.org/10.1016/j.cell.2017.09.042openalex-snapshot
Universal Patterns of Selection in Cancer and Somatic Tissues
inferredcites →https://doi.org/10.1016/j.cell.2018.02.060openalex-snapshot
Comprehensive Characterization of Cancer Driver Genes and Mutations
inferredcites →https://doi.org/10.1016/j.cell.2018.03.039openalex-snapshot
Pathogenic Germline Variants in 10,389 Adult Cancers
inferredcites →https://doi.org/10.1016/j.cell.2018.05.036openalex-snapshot
Structural Alterations Driving Castration-Resistant Prostate Cancer Revealed by Linked-Read Genome Sequencing
inferredcites →https://doi.org/10.1016/j.coisb.2016.12.017openalex-snapshot
Non-coding genetic variation in cancer
inferredcites →https://doi.org/10.1016/j.gendis.2015.01.003openalex-snapshot
Current perspectives on FOXA1 regulation of androgen receptor signaling and prostate cancer
inferredcites →https://doi.org/10.1016/j.immuni.2015.10.007openalex-snapshot
The PIAS-like Coactivator Zmiz1 Is a Direct and Selective Cofactor of Notch1 in T Cell Development and Leukemia
inferredcites →https://doi.org/10.1016/j.jmoldx.2016.06.010openalex-snapshot
Reliable Next-Generation Sequencing of Formalin-Fixed, Paraffin-Embedded Tissue Using Single Molecule Tags
inferredcites →https://doi.org/10.1016/j.jmoldx.2018.04.005openalex-snapshot
Determining Performance Metrics for Targeted Next-Generation Sequencing Panels Using Reference Materials
inferredcites →https://doi.org/10.1016/s1470-2045(18)30119-0openalex-snapshot
Larotrectinib for paediatric solid tumours harbouring NTRK gene fusions: phase 1 results from a multicentre, open-label, phase 1/2 study
inferredcites →https://doi.org/10.1038/gim.2016.190openalex-snapshot
Recommendations for reporting of secondary findings in clinical exome and genome sequencing, 2016 update (ACMG SF v2.0): a policy statement of the American College of Medical Genetics and Genomics
inferredcites →https://doi.org/10.1038/nature08987openalex-snapshot
International network of cancer genome projects
inferredcites →https://doi.org/10.1038/nature11404openalex-snapshot
Comprehensive genomic characterization of squamous cell lung cancers
inferredcites →https://doi.org/10.1038/nature12477openalex-snapshot
Signatures of mutational processes in human cancer
inferredcites →https://doi.org/10.1038/nature12628openalex-snapshot
Selection and adaptation during metastatic cancer progression
inferredcites →https://doi.org/10.1038/nature14347openalex-snapshot
The evolutionary history of lethal metastatic prostate cancer
inferredcites →https://doi.org/10.1038/nature23306openalex-snapshot
Integrative clinical genomics of metastatic cancer
inferredcites →https://doi.org/10.1038/nature25480openalex-snapshot
The landscape of genomic alterations across childhood cancers
inferredcites →https://doi.org/10.1038/nature25795openalex-snapshot
Pan-cancer genome and transcriptome analyses of 1,699 paediatric leukaemias and solid tumours
inferredcites →https://doi.org/10.1038/nbt.2203openalex-snapshot
Absolute quantification of somatic DNA alterations in human cancer
inferredcites →https://doi.org/10.1038/ng.2699openalex-snapshot
Integrated molecular analysis of clear-cell renal cell carcinoma
inferredcites →https://doi.org/10.1038/ng.2760openalex-snapshot
Pan-cancer patterns of somatic copy number alteration
inferredcites →https://doi.org/10.1038/ng.2764openalex-snapshot
The Cancer Genome Atlas Pan-Cancer analysis project
inferredcites →https://doi.org/10.1038/ng.2974openalex-snapshot
Dystrophin is a tumor suppressor in human cancers with myogenic programs
inferredcites →https://doi.org/10.1038/ng.3774openalex-snapshot
CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer
inferredcites →https://doi.org/10.1038/nm.3984openalex-snapshot
Pan-cancer analysis of the extent and consequences of intratumor heterogeneity
inferredcites →https://doi.org/10.1038/nm.4333openalex-snapshot
Mutational landscape of metastatic cancer revealed from prospective clinical sequencing of 10,000 patients
inferredcites →https://doi.org/10.1038/nrc.2017.52openalex-snapshot
Fragile sites in cancer: more than meets the eye
inferredcites →https://doi.org/10.1038/s41587-019-0055-9openalex-snapshot
The International Cancer Genome Consortium Data Portal
inferredcites →https://doi.org/10.1038/s41588-018-0086-zopenalex-snapshot
Sequencing of prostate cancers identifies new cancer genes, routes of progression and drug targets
inferredcites →https://doi.org/10.1038/s41588-018-0165-1openalex-snapshot
Genome doubling shapes the evolution and prognosis of advanced cancers
inferredcites →https://doi.org/10.1038/s41598-018-21160-zopenalex-snapshot
ZFP36L1 and ZFP36L2 inhibit cell proliferation in a cyclin D-dependent and p53-independent manner
inferredcites →https://doi.org/10.1038/srep13321openalex-snapshot
MSIseq: Software for Assessing Microsatellite Instability from Catalogs of Somatic Mutations
inferredcites →https://doi.org/10.1038/srep24607openalex-snapshot
A somatic reference standard for cancer genome sequencing
inferredcites →https://doi.org/10.1038/srep28103openalex-snapshot
OncoScape: Exploring the cancer aberration landscape by genomic data fusion
inferredcites →https://doi.org/10.1056/nejm200001133420201openalex-snapshot
Tumor Microsatellite Instability and Clinical Outcome in Young Patients with Colorectal Cancer
inferredcites →https://doi.org/10.1056/nejmoa1613493openalex-snapshot
First-Line Nivolumab in Stage IV or Recurrent Non–Small-Cell Lung Cancer
inferredcites →https://doi.org/10.1056/nejmoa1801946openalex-snapshot
Nivolumab plus Ipilimumab in Lung Cancer with a High Tumor Mutational Burden
inferredcites →https://doi.org/10.1073/pnas.1009843107openalex-snapshot
Allele-specific copy number analysis of tumors
inferredcites →https://doi.org/10.1073/pnas.1206004109openalex-snapshot
CDX2 is an amplified lineage-survival oncogene in colorectal cancer
inferredcites →https://doi.org/10.1073/pnas.68.4.820openalex-snapshot
Mutation and Cancer: Statistical Study of Retinoblastoma
inferredcites →https://doi.org/10.1093/annonc/mdy263openalex-snapshot
A framework to rank genomic alterations as targets for cancer precision medicine: the ESMO Scale for Clinical Actionability of molecular Targets (ESCAT)
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/bts271openalex-snapshot
Strelka: accurate somatic small-variant calling from sequenced tumor–normal sample pairs
inferredcites →https://doi.org/10.1093/bioinformatics/btv710openalex-snapshot
Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications
inferredcites →https://doi.org/10.1093/database/bar026openalex-snapshot
International Cancer Genome Consortium Data Portal--a one-stop shop for cancer genomics data
inferredcites →https://doi.org/10.1093/nar/gku1011openalex-snapshot
Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data
inferredcites →https://doi.org/10.1093/nar/gkv1222openalex-snapshot
ClinVar: public archive of interpretations of clinically relevant variants
inferredcites →https://doi.org/10.1093/nar/gkw1121openalex-snapshot
COSMIC: somatic cancer genetics at high-resolution
inferredcites →https://doi.org/10.1101/120295openalex-snapshot
STAR-Fusion: Fast and Accurate Fusion Transcript Detection from RNA-Seq
inferredcites →https://doi.org/10.1101/190330openalex-snapshot
The whole-genome panorama of cancer drivers
inferredcites →https://doi.org/10.1101/201178openalex-snapshot
Scaling accurate genetic variant discovery to tens of thousands of samples
inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
inferredcites →https://doi.org/10.1126/science.aai8515openalex-snapshot
Origins of lymphatic and distant metastases in human colorectal cancer
inferredcites →https://doi.org/10.1126/science.aat7171openalex-snapshot
Minimal functional driver gene heterogeneity among untreated metastases
inferredcites →https://doi.org/10.1136/gut.48.4.515openalex-snapshot
Can APC mutation analysis contribute to therapeutic decisions in familial adenomatous polyposis? Experience from 680 FAP families
inferredcites →https://doi.org/10.1155/2014/260549openalex-snapshot
p16INK4Aand p14ARFGene Promoter Hypermethylation as Prognostic Biomarker in Oral and Oropharyngeal Squamous Cell Carcinoma: A Review
inferredcites →https://doi.org/10.1158/0008-5472.can-12-2706openalex-snapshot
SMAD2 , SMAD3 and SMAD4 Mutations in Colorectal Cancer
inferredcites →https://doi.org/10.1158/0008-5472.can-15-0701-topenalex-snapshot
Recurrent MLK4 Loss-of-Function Mutations Suppress JNK Signaling to Promote Colon Tumorigenesis
inferredcites →https://doi.org/10.1158/1535-7163.mct-16-0163openalex-snapshot
SYD985, a Novel Duocarmycin-Based HER2-Targeting Antibody–Drug Conjugate, Shows Antitumor Activity in Uterine Serous Carcinoma with HER2/Neu Expression
inferredcites →https://doi.org/10.1158/1535-7163.mct-17-0386openalex-snapshot
Tumor Mutational Burden as an Independent Predictor of Response to Immunotherapy in Diverse Cancers
inferredcites →https://doi.org/10.1158/1538-7445.am2018-437openalex-snapshot
Abstract 437: Leveraging new methods in single-cell copy number analysis and clonotype detection to uncover and characterize hidden subclones within standard cell lines
inferredcites →https://doi.org/10.1158/2159-8290.cd-17-0321openalex-snapshot
Accelerating Discovery of Functional Mutant Alleles in Cancer
inferredcites →https://doi.org/10.1186/1471-2164-13-591openalex-snapshot
Copynumber: Efficient algorithms for single- and multi-track copy number segmentation
inferredcites →https://doi.org/10.1186/gb-2011-12-4-r41openalex-snapshot
GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers
inferredcites →https://doi.org/10.1186/s13073-018-0531-8openalex-snapshot
Cancer Genome Interpreter annotates the biological and clinical relevance of tumor alterations
inferredcites →https://doi.org/10.1186/s13073-018-0539-0openalex-snapshot
MutationalPatterns: comprehensive genome-wide analysis of mutational processes
inferredcites →https://doi.org/10.1200/po.17.00011openalex-snapshot
OncoKB: A Precision Oncology Knowledge Base
inferredcites →https://doi.org/10.1634/theoncologist.2016-0085openalex-snapshot
Implementation of a Multicenter Biobanking Collaboration for Next-Generation Sequencing-Based Biomarker Discovery Based on Fresh Frozen Pretreatment Tumor Tissue Biopsies
inferredcites →https://doi.org/10.18632/oncotarget.10598openalex-snapshot
NETs: organ-related epigenetic derangements and potential clinical applications
inferredcites →https://doi.org/10.18632/oncotarget.12130openalex-snapshot
RNF43 and ZNRF3 are commonly altered in serrated pathway colorectal tumorigenesis
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1016/j.cell.2020.08.006openalex-snapshot
Distinct Classes of Complex Structural Variation Uncovered across Thousands of Cancer Genome Graphs
inferred← citeshttps://doi.org/10.1016/j.jocn.2019.08.044openalex-snapshot
Whole genome and biomarker analysis of patients with recurrent glioblastoma on bevacizumab: A subset analysis of the CABARET trial
inferred← citeshttps://doi.org/10.1038/s41467-019-12594-8openalex-snapshot
5-Fluorouracil treatment induces characteristic T>G mutations in human cancer
inferred← citeshttps://doi.org/10.1038/s41467-019-13084-7openalex-snapshot
The genomic landscape of metastatic castration-resistant prostate cancers reveals multiple distinct genotypes with potential clinical impact
inferred← citeshttps://doi.org/10.1038/s41467-020-19406-4openalex-snapshot
Pan-cancer landscape of homologous recombination deficiency
inferred← citeshttps://doi.org/10.1038/s41467-022-33663-5openalex-snapshot
Common anti-cancer therapies induce somatic mutations in stem cells of healthy tissue
inferred← citeshttps://doi.org/10.1038/s41568-019-0185-xopenalex-snapshot
An analysis of genetic heterogeneity in untreated cancers
inferred← citeshttps://doi.org/10.1038/s41586-019-1600-xopenalex-snapshot
The Drug Rediscovery protocol facilitates the expanded use of existing anticancer drugs
inferred← citeshttps://doi.org/10.1038/s41588-019-0507-7openalex-snapshot
The genomic landscape of metastatic breast cancer highlights changes in mutation and signature frequencies
inferred← citeshttps://doi.org/10.1038/s41588-019-0525-5openalex-snapshot
The mutational footprints of cancer therapies
inferred← citeshttps://doi.org/10.1038/s41591-019-0422-6openalex-snapshot
An organoid platform for ovarian cancer captures intra- and interpatient heterogeneity
inferred← citeshttps://doi.org/10.1038/s41598-023-33932-3openalex-snapshot
The genome-wide mutational consequences of DNA hypomethylation
inferred← citeshttps://doi.org/10.1091/mbc.e21-02-0089openalex-snapshot
CNOT3 interacts with the Aurora B and MAPK/ERK kinases to promote survival of differentiating mesendodermal progenitor cells
inferred← citeshttps://doi.org/10.1101/214494openalex-snapshot
A deep learning system can accurately classify primary and metastatic cancers based on patterns of passenger mutations
inferred← citeshttps://doi.org/10.1101/517565openalex-snapshot
Tumor mutational landscape is a record of the pre-malignant state
inferred← citeshttps://doi.org/10.1101/546051openalex-snapshot
The genomic landscape of metastatic castration-resistant prostate cancers using whole genome sequencing reveals multiple distinct genotypes with potential clinical impact
inferred← citeshttps://doi.org/10.1101/781013openalex-snapshot
GRIDSS, PURPLE, LINX: Unscrambling the tumor genome via integrated analysis of structural variation and copy number
inferred← citeshttps://doi.org/10.1101/mcs.a003251openalex-snapshot
A case study of a long-term glioblastoma survivor with unmethylated MGMT and hypermutated genotype
inferred← citeshttps://doi.org/10.1111/his.14252openalex-snapshot
Driver mutations occur frequently in metastases of well‐differentiated small intestine neuroendocrine tumours
inferred← citeshttps://doi.org/10.1126/scitranslmed.aay2574openalex-snapshot
Patient-derived organoids can predict response to chemotherapy in metastatic colorectal cancer patients
inferred← citeshttps://doi.org/10.1158/1078-0432.ccr-20-4068openalex-snapshot
Structural Variants at the BRCA1/2 Loci are a Common Source of Homologous Repair Deficiency in High-grade Serous Ovarian Carcinoma
inferred← citeshttps://doi.org/10.1186/s13073-021-00990-zopenalex-snapshot
Patient-derived xenograft models capture genomic heterogeneity in endometrial cancer
inferred← citeshttps://doi.org/10.21037/tlcr-21-48openalex-snapshot
Genomic evolutionary trajectory of metastatic squamous cell carcinoma of the lung
inferred← citeshttps://doi.org/10.3389/fgene.2021.760039openalex-snapshot
The Mutagenic Impact of Environmental Exposures in Human Cells and Cancer: Imprints Through Time
inferred← citeshttps://doi.org/10.3390/cancers11081185openalex-snapshot
Targeted Treatment Options of Recurrent Radioactive Iodine Refractory Hürthle Cell Cancer
inferred← citeshttps://doi.org/10.3390/cancers15174416openalex-snapshot
Genomic Alterations Associated with Estrogen Receptor Pathway Activity in Metastatic Breast Cancer Have a Differential Impact on Downstream ER Signaling
inferred← citeshttps://doi.org/10.4414/smw.2020.20158openalex-snapshot
Holistic cancer genome profiling for every patient
Editorial review for independent work. ICSAC — the Institute for Complexity
Science and Advanced Computing — runs a structured editorial panel for researchers
publishing outside journals, and publishes on CiteStamp rails. Submission is free
and goes through ORCID: icsacinstitute.org/submit.