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Genome-wide association study of diabetic kidney disease highlights biology involved in renal basement membrane collagen

https://doi.org/10.1101/499616
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/humu.21401openalex-snapshot
Mapping structural landmarks, ligand binding sites, and missense mutations to the collagen IV heterotrimers predicts major functional domains, novel interactions, and variation in phenotypes in inherited diseases affecting basement membranes
inferredcites →https://doi.org/10.1002/jemt.20564openalex-snapshot
Mammalian collagen IV
inferredcites →https://doi.org/10.1007/bf00403913openalex-snapshot
Familial factors determine the development of diabetic nephropathy in patients with IDDM
inferredcites →https://doi.org/10.1007/s00125-014-3202-3openalex-snapshot
Genome-wide association study of urinary albumin excretion rate in patients with type 1 diabetes
inferredcites →https://doi.org/10.1007/s00125-018-4567-5openalex-snapshot
Biomarkers of diabetic kidney disease
inferredcites →https://doi.org/10.1007/s00439-016-1714-2openalex-snapshot
Association of kidney structure-related gene variants with type 2 diabetes-attributed end-stage kidney disease in African Americans
inferredcites →https://doi.org/10.1007/s11892-006-0080-1openalex-snapshot
Inflammation and diabetic nephropathy
inferredcites →https://doi.org/10.1016/j.ajhg.2017.05.004openalex-snapshot
Genetic-Variation-Driven Gene-Expression Changes Highlight Genes with Important Functions for Kidney Disease
inferredcites →https://doi.org/10.1016/j.bbadis.2017.09.011openalex-snapshot
BMP7-induced-Pten inhibits Akt and prevents renal fibrosis
inferredcites →https://doi.org/10.1016/j.bbalip.2017.12.005openalex-snapshot
Mitochondrial CDP-diacylglycerol synthase activity is due to the peripheral protein, TAMM41 and not due to the integral membrane protein, CDP-diacylglycerol synthase 1
inferredcites →https://doi.org/10.1016/j.cmet.2013.03.018openalex-snapshot
Tam41 Is a CDP-Diacylglycerol Synthase Required for Cardiolipin Biosynthesis in Mitochondria
inferredcites →https://doi.org/10.1016/j.imbio.2011.12.008openalex-snapshot
Structure and function of collectin liver 1 (CL-L1) and collectin 11 (CL-11, CL-K1)
inferredcites →https://doi.org/10.1016/j.immuni.2011.05.003openalex-snapshot
Immune Signaling by RIG-I-like Receptors
inferredcites →https://doi.org/10.1016/j.jdiacomp.2007.06.005openalex-snapshot
The effect of polymorphisms in the renin–angiotensin–aldosterone system on diabetic nephropathy risk
inferredcites →https://doi.org/10.1016/j.kint.2017.12.018openalex-snapshot
Alport syndrome: a unified classification of genetic disorders of collagen IV α345: a position paper of the Alport Syndrome Classification Working Group
inferredcites →https://doi.org/10.1016/j.matbio.2010.03.002openalex-snapshot
Loss of collagen-receptor DDR1 delays renal fibrosis in hereditary type IV collagen disease
inferredcites →https://doi.org/10.1016/j.semnephrol.2004.04.005openalex-snapshot
Role of nitric oxide in diabetic nephropathy
inferredcites →https://doi.org/10.1016/j.tcb.2010.01.008openalex-snapshot
Extracellular BMP-antagonist regulation in development and disease: tied up in knots
inferredcites →https://doi.org/10.1016/s0021-9258(19)50639-1openalex-snapshot
Evidence for separate networks of classical and novel basement membrane collagen. Characterization of alpha 3(IV)-alport antigen heterodimer.
inferredcites →https://doi.org/10.1016/s0161-6420(98)91020-xopenalex-snapshot
The Wisconsin epidemiologic study of diabetic retinopathy: XVII
inferredcites →https://doi.org/10.1016/s1097-2765(00)80003-9openalex-snapshot
The Discoidin Domain Receptor Tyrosine Kinases Are Activated by Collagen
inferredcites →https://doi.org/10.1038/ki.1996.527openalex-snapshot
Magnitude of end-stage renal disease in IDDM: A 35 year follow-up study
inferredcites →https://doi.org/10.1038/nbt1010-1045openalex-snapshot
The NIH Roadmap Epigenomics Mapping Consortium
inferredcites →https://doi.org/10.1038/ncomms10023openalex-snapshot
Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function
inferredcites →https://doi.org/10.1038/ng.3286openalex-snapshot
Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C
inferredcites →https://doi.org/10.1038/ng.757openalex-snapshot
Mutations in lectin complement pathway genes COLEC11 and MASP1 cause 3MC syndrome
inferredcites →https://doi.org/10.1038/s41591-018-0194-4openalex-snapshot
Renal compartment–specific genetic variation analyses identify new pathways in chronic kidney disease
inferredcites →https://doi.org/10.1038/s41598-018-29211-1openalex-snapshot
Confirmation of GLRA3 as a susceptibility locus for albuminuria in Finnish patients with type 1 diabetes
inferredcites →https://doi.org/10.1038/sj.hdy.6800717openalex-snapshot
Adjusting multiple testing in multilocus analyses using the eigenvalues of a correlation matrix
inferredcites →https://doi.org/10.1038/srep45040openalex-snapshot
1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function
inferredcites →https://doi.org/10.1042/cs20120198openalex-snapshot
Inflammation and the pathogenesis of diabetic nephropathy
inferredcites →https://doi.org/10.1046/j.1523-1755.2002.00113.xopenalex-snapshot
Quantitative gene expression analysis in renal biopsies: A novel protocol for a high-throughput multicenter application
inferredcites →https://doi.org/10.1053/j.ajkd.2005.03.014openalex-snapshot
Expression of Gremlin, a Bone Morphogenetic Protein Antagonist, in Human Diabetic Nephropathy
inferredcites →https://doi.org/10.1053/j.ajkd.2014.08.001openalex-snapshot
Diabetic Kidney Disease: A Report From an ADA Consensus Conference
inferredcites →https://doi.org/10.1056/nejm198905043201801openalex-snapshot
Familial Clustering of Diabetic Kidney Disease
inferredcites →https://doi.org/10.1056/nejmoa0808400openalex-snapshot
Renal and Retinal Effects of Enalapril and Losartan in Type 1 Diabetes
inferredcites →https://doi.org/10.1073/pnas.93.17.9021openalex-snapshot
Induction of nephrogenic mesenchyme by osteogenic protein 1 (bone morphogenetic protein 7).
inferredcites →https://doi.org/10.1074/jbc.275.14.9901openalex-snapshot
IHG-2, a Mesangial Cell Gene Induced by High Glucose, Is Human gremlin
inferredcites →https://doi.org/10.1074/jbc.m413102200openalex-snapshot
Bone Morphogenic Protein-7 Induces Mesenchymal to Epithelial Transition in Adult Renal Fibroblasts and Facilitates Regeneration of Injured Kidney
inferredcites →https://doi.org/10.1080/19336918.2018.1441661openalex-snapshot
DDR1: A major player in renal diseases
inferredcites →https://doi.org/10.1093/bioinformatics/btw173openalex-snapshot
CHiCP: a web-based tool for the integrative and interactive visualization of promoter capture Hi-C datasets
inferredcites →https://doi.org/10.1093/biostatistics/4.2.249openalex-snapshot
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
inferredcites →https://doi.org/10.1093/biostatistics/kxj037openalex-snapshot
Adjusting batch effects in microarray expression data using empirical Bayes methods
inferredcites →https://doi.org/10.1093/hmg/dds369openalex-snapshot
Integration of genome-wide association studies with biological knowledge identifies six novel genes related to kidney function
inferredcites →https://doi.org/10.1093/ije/dyw152openalex-snapshot
Cohort Profile: Scottish Diabetes Research Network Type 1 Bioresource Study (SDRNT1BIO)
inferredcites →https://doi.org/10.1093/ndt/gfu279openalex-snapshot
Glomerular structural-functional relationship models of diabetic nephropathy are robust in type 1 diabetic patients
inferredcites →https://doi.org/10.1096/fj.11-194902openalex-snapshot
Genetic inhibition of discoidin domain receptor 1 protects mice against crescentic glomerulonephritis
inferredcites →https://doi.org/10.1097/01.shk.0000228797.41044.08openalex-snapshot
EMERGING PARADIGM
inferredcites →https://doi.org/10.1101/gad.9.22.2808openalex-snapshot
BMP-7 is an inducer of nephrogenesis, and is also required for eye development and skeletal patterning.
inferredcites →https://doi.org/10.1111/1753-0407.12283openalex-snapshot
Insulin resistance is associated with all chronic complications in type 1 diabetes
inferredcites →https://doi.org/10.1111/dme.12775openalex-snapshot
Distinct methylation patterns in genes that affect mitochondrial function are associated with kidney disease in blood‐derived DNA from individuals with Type 1 diabetes
inferredcites →https://doi.org/10.1111/j.1464-5491.2006.01948.xopenalex-snapshot
Genetic influences of the intercellular adhesion molecule 1 (ICAM‐1) gene polymorphisms in development of Type 1 diabetes and diabetic nephropathy
inferredcites →https://doi.org/10.1111/jgh.13814openalex-snapshot
Fatty liver index and hepatic steatosis index for prediction of non‐alcoholic fatty liver disease in type 1 diabetes
inferredcites →https://doi.org/10.1126/science.aar2131openalex-snapshot
Single-cell transcriptomics of the mouse kidney reveals potential cellular targets of kidney disease
inferredcites →https://doi.org/10.1136/bmj.315.7107.524openalex-snapshot
The diabetes audit and research in Tayside Scotland (darts) study: electronic record linkage to create a diabetes register
inferredcites →https://doi.org/10.1159/000188542openalex-snapshot
Differential Distribution of Type IV Collagen Chains in Patients with Diabetic Nephropathy in Non-lnsulin-Dependent Diabetes mellitus
inferredcites →https://doi.org/10.1159/000321340openalex-snapshot
Genetic Polymorphisms in Nitric Oxide Synthase 3 Gene and Implications for Kidney Disease: A Meta-Analysis
inferredcites →https://doi.org/10.1172/jci119321openalex-snapshot
Contribution of genetic polymorphism in the renin-angiotensin system to the development of renal complications in insulin-dependent diabetes: Genetique de la Nephropathie Diabetique (GENEDIAB) study group.
inferredcites →https://doi.org/10.1172/jci83000openalex-snapshot
Collectin-11 detects stress-induced L-fucose pattern to trigger renal epithelial injury
inferredcites →https://doi.org/10.1186/1755-8794-3-33openalex-snapshot
Genome-wide DNA methylation analysis for diabetic nephropathy in type 1 diabetes mellitus
inferredcites →https://doi.org/10.1371/journal.pcbi.1004219openalex-snapshot
MAGMA: Generalized Gene-Set Analysis of GWAS Data
inferredcites →https://doi.org/10.1371/journal.pcbi.1004714openalex-snapshot
Fast and Rigorous Computation of Gene and Pathway Scores from SNP-Based Summary Statistics
inferredcites →https://doi.org/10.1371/journal.pgen.1002921openalex-snapshot
New Susceptibility Loci Associated with Kidney Disease in Type 1 Diabetes
inferredcites →https://doi.org/10.1371/journal.pgen.1005352openalex-snapshot
Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND)
inferredcites →https://doi.org/10.1371/journal.pone.0097985openalex-snapshot
TLR4 Activation Promotes Podocyte Injury and Interstitial Fibrosis in Diabetic Nephropathy
inferredcites →https://doi.org/10.14814/phy2.12010openalex-snapshot
Urinary excretion of RAS, BMP, and WNT pathway components in diabetic kidney disease
inferredcites →https://doi.org/10.1681/asn.2006030278openalex-snapshot
Renal Bone Morphogenetic Protein-7 Protects against Diabetic Nephropathy
inferredcites →https://doi.org/10.1681/asn.2010111210openalex-snapshot
Toll-Like Receptor 4 Promotes Tubular Inflammation in Diabetic Nephropathy
inferredcites →https://doi.org/10.1681/asn.2012070739openalex-snapshot
Renal Lesions Predict Progression of Diabetic Nephropathy in Type 1 Diabetes
inferredcites →https://doi.org/10.1681/asn.2012111122openalex-snapshot
Chromosome 2q31.1 Associates with ESRD in Women with Type 1 Diabetes
inferredcites →https://doi.org/10.1681/asn.2016020231openalex-snapshot
The Genetic Landscape of Renal Complications in Type 1 Diabetes
inferredcites →https://doi.org/10.2215/cjn.05760515openalex-snapshot
Structural Predictors of Loss of Renal Function in American Indians with Type 2 Diabetes
inferredcites →https://doi.org/10.2337/db06-0477openalex-snapshot
Modular Activation of Nuclear Factor-κB Transcriptional Programs in Human Diabetic Nephropathy
inferredcites →https://doi.org/10.2337/db08-1328openalex-snapshot
Enhanced Expression of Janus Kinase–Signal Transducer and Activator of Transcription Pathway Members in Human Diabetic Nephropathy
inferredcites →https://doi.org/10.2337/db08-1365openalex-snapshot
Allelic Depletion of grem1 Attenuates Diabetic Kidney Disease
inferredcites →https://doi.org/10.2337/db08-1514openalex-snapshot
Genome-Wide Association Scan for Diabetic Nephropathy Susceptibility Genes in Type 1 Diabetes
inferredcites →https://doi.org/10.2337/db15-0254openalex-snapshot
Genetic Evidence for a Causal Role of Obesity in Diabetic Kidney Disease
inferredcites →https://doi.org/10.2337/db17-0914openalex-snapshot
A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes
inferredcites →https://doi.org/10.2337/db18-1414-popenalex-snapshot
Metformin and Dietary Advice for Pregnant Women Who Are Overweight or Obese to Promote Gestational Restriction of Weight—The GROW Randomized Trial
inferredcites →https://doi.org/10.2337/dc13-2112openalex-snapshot
The Diabetes Control and Complications Trial/Epidemiology of Diabetes Interventions and Complications Study at 30 Years: Overview
inferredcites →https://doi.org/10.2337/dc15-0184openalex-snapshot
Progressive Renal Decline: The New Paradigm of Diabetic Nephropathy in Type 1 Diabetes
inferredcites →https://doi.org/10.2337/diab.39.9.1116openalex-snapshot
Prevalence of Complications in IDDM by Sex and Duration: Pittsburgh Epidemiology of Diabetes Complications Study II
inferredcites →https://doi.org/10.2337/diabetes.52.11.2833openalex-snapshot
Effect of Type 1 Diabetes on the Gender Difference in Coronary Artery Calcification: a Role for Insulin Resistance?
inferredcites →https://doi.org/10.2337/diabetes.53.9.2449openalex-snapshot
Population-Based Assessment of Familial Clustering of Diabetic Nephropathy in Type 1 Diabetes
inferredcites →https://doi.org/10.2337/diacare.18.3.361openalex-snapshot
Implementation of Treatment Protocols in the Diabetes Control and Complications Trial
inferredcites →https://doi.org/10.2337/diacare.25.5.859openalex-snapshot
Risk Factors for Development of Incipient and Overt Diabetic Nephropathy in Type 1 Diabetic Patients
inferredcites →https://doi.org/10.2337/diacare.27.11.2661openalex-snapshot
Different Patterns of Insulin Resistance in Relatives of Type 1 Diabetic Patients With Retinopathy or Nephropathy
inferredcites →https://doi.org/10.2337/diacare.28.8.2019openalex-snapshot
Metabolic Syndrome in Type 1 Diabetes
inferredcites →https://doi.org/10.4049/jimmunol.1002185openalex-snapshot
Collectin 11 (CL-11, CL-K1) Is a MASP-1/3–Associated Plasma Collectin with Microbial-Binding Activity
inferredcites →https://doi.org/10.4161/epi.6.1.13362openalex-snapshot
DNA methylation profiling identifies epigenetic differences between diabetes patients with ESRD and diabetes patients without nephropathy

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.addr.2021.113965openalex-snapshot
Therapeutic potential of pro-resolving mediators in diabetic kidney disease
inferred← citeshttps://doi.org/10.1016/j.ajpath.2021.11.004openalex-snapshot
Single-Cell Transcriptomics Reveal Disrupted Kidney Filter Cell-Cell Interactions after Early and Selective Podocyte Injury
inferred← citeshttps://doi.org/10.1016/j.kint.2019.04.031openalex-snapshot
Genetic characterization of early renal changes in a novel mouse model of diabetic kidney disease
inferred← citeshttps://doi.org/10.1016/j.kint.2019.05.015openalex-snapshot
From podocyte biology to novel cures for glomerular disease
inferred← citeshttps://doi.org/10.1093/med/9780199592548.003.0140_update_001openalex-snapshot
Disordered scarring and failure of repair
inferred← citeshttps://doi.org/10.1186/s12933-025-02895-2openalex-snapshot
Heme oxygenase-1 polymorphisms associate with ischemic cardiac complications and all-cause mortality in type 1 diabetes
inferred← citeshttps://doi.org/10.1369/0022155419849386openalex-snapshot
Novel Targets for Therapy of Renal Fibrosis
inferred← citeshttps://doi.org/10.14300/mnnc.2020.15143openalex-snapshot
Role of type IV collagen in the development of diabetic nephropathy in patients with diabetes mellitus
inferred← citeshttps://doi.org/10.2215/cjn.11070919openalex-snapshot
The Use of Genomics to Drive Kidney Disease Drug Discovery and Development
inferred← citeshttps://doi.org/10.2337/figshare.13507995openalex-snapshot
Novel Linkage Peaks Discovered for Diabetic Nephropathy in Individuals With Type 1 Diabetes
inferred← citeshttps://doi.org/10.2337/figshare.13507995.v1openalex-snapshot
Novel Linkage Peaks Discovered for Diabetic Nephropathy in Individuals With Type 1 Diabetes
inferred← citeshttps://doi.org/10.3390/ijms241311209openalex-snapshot
Albuminuria-Related Genetic Biomarkers: Replication and Predictive Evaluation in Individuals with and without Diabetes from the UK Biobank
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