On the public citation graph
R-loops and regulatory changes in chronologically ageing fission yeast cells drive non-random patterns of genome rearrangements
0 signed · 119 inferred · view as graph
Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.
Is this your work? Sign in with ORCID and put your name on the
claims that are yours.
Reference health. See whether every reference in this work resolves to a
known work and none has been retracted — and get a dated CiteStamped
badge you can embed.
What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/(sici)1097-0061(199807)14:10<943::aid-yea292>3.0.co;2-yopenalex-snapshot
Heterologous modules for efficient and versatile PCR-based gene targeting inSchizosaccharomyces pombe
inferredcites →https://doi.org/10.1007/978-1-4939-7306-4_24openalex-snapshot
Detection of DNA-RNA Hybrids In Vivo
inferredcites →https://doi.org/10.1007/bf00341449openalex-snapshot
Isolation and genetic characterization of a thymineless death-resistant mutant of Escherichia coli K12: Identification of a new mutation (recQ1) that blocks the RecF recombination pathway
inferredcites →https://doi.org/10.1007/bf00420224openalex-snapshot
Mapping of rRNA genes by integration of hybrid plasmids in Schizosaccharomyces pombe
inferredcites →https://doi.org/10.1016/0022-1759(86)90040-2openalex-snapshot
Characterization of monoclonal antibody to DNA · RNA and its application to immunodetection of hybrids
inferredcites →https://doi.org/10.1016/0092-8674(82)90216-1openalex-snapshot
Deficient repair of chemical adducts in α DNA of monkey cells
inferredcites →https://doi.org/10.1016/0531-5565(86)90038-0openalex-snapshot
Genetic instability as the primary cause of human aging
inferredcites →https://doi.org/10.1016/j.cell.2005.01.028openalex-snapshot
DNA Repair, Genome Stability, and Aging
inferredcites →https://doi.org/10.1016/j.cell.2005.06.008openalex-snapshot
Inactivation of the SR Protein Splicing Factor ASF/SF2 Results in Genomic Instability
inferredcites →https://doi.org/10.1016/j.cell.2010.08.013openalex-snapshot
Regulation of Replication Termination by Reb1 Protein-Mediated Action at a Distance
inferredcites →https://doi.org/10.1016/j.cell.2014.03.048openalex-snapshot
RECQL5 Controls Transcript Elongation and Suppresses Genome Instability Associated with Transcription Stress
inferredcites →https://doi.org/10.1016/j.cell.2014.12.017openalex-snapshot
Elimination of Unfit Cells Maintains Tissue Health and Prolongs Lifespan
inferredcites →https://doi.org/10.1016/j.cell.2015.12.039openalex-snapshot
Long Neural Genes Harbor Recurrent DNA Break Clusters in Neural Stem/Progenitor Cells
inferredcites →https://doi.org/10.1016/j.celrep.2019.05.009openalex-snapshot
Yeast Sirtuin Family Members Maintain Transcription Homeostasis to Ensure Genome Stability
inferredcites →https://doi.org/10.1016/j.cub.2020.01.053openalex-snapshot
Size-Dependent Increase in RNA Polymerase II Initiation Rates Mediates Gene Expression Scaling with Cell Size
inferredcites →https://doi.org/10.1016/j.jmb.2017.12.016openalex-snapshot
The Affinity of the S9.6 Antibody for Double-Stranded RNAs Impacts the Accurate Mapping of R-Loops in Fission Yeast
inferredcites →https://doi.org/10.1016/j.molcel.2003.08.010openalex-snapshot
Cotranscriptionally Formed DNA:RNA Hybrids Mediate Transcription Elongation Impairment and Transcription-Associated Recombination
inferredcites →https://doi.org/10.1016/j.molcel.2011.10.017openalex-snapshot
RNase H and Multiple RNA Biogenesis Factors Cooperate to Prevent RNA:DNA Hybrids from Generating Genome Instability
inferredcites →https://doi.org/10.1016/j.molcel.2012.01.017openalex-snapshot
R-Loop Formation Is a Distinctive Characteristic of Unmethylated Human CpG Island Promoters
inferredcites →https://doi.org/10.1016/j.molcel.2016.08.004openalex-snapshot
Do DNA Double-Strand Breaks Drive Aging?
inferredcites →https://doi.org/10.1016/j.mrfmmm.2016.02.004openalex-snapshot
DNA double strand break repair, aging and the chromatin connection
inferredcites →https://doi.org/10.1016/j.tibs.2008.09.003openalex-snapshot
Rising from the RecQ-age: the role of human RecQ helicases in genome maintenance
inferredcites →https://doi.org/10.1016/j.tig.2014.01.001openalex-snapshot
The role of microhomology in genomic structural variation
inferredcites →https://doi.org/10.1038/35006670openalex-snapshot
DNA repair protein Ku80 suppresses chromosomal aberrations and malignant transformation
inferredcites →https://doi.org/10.1038/47076openalex-snapshot
Mitochondrial DNA repairs double-strand breaks in yeast chromosomes
inferredcites →https://doi.org/10.1038/nature08981openalex-snapshot
Lessons on longevity from budding yeast
inferredcites →https://doi.org/10.1038/nature11247openalex-snapshot
An integrated encyclopedia of DNA elements in the human genome
inferredcites →https://doi.org/10.1038/nature724openalex-snapshot
The genome sequence of Schizosaccharomyces pombe
inferredcites →https://doi.org/10.1038/nbt.1628openalex-snapshot
Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe
inferredcites →https://doi.org/10.1038/ncb1591openalex-snapshot
Positional stability of single double-strand breaks in mammalian cells
inferredcites →https://doi.org/10.1038/ncomms14061openalex-snapshot
Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast
inferredcites →https://doi.org/10.1038/ng.2270openalex-snapshot
Detectable clonal mosaicism and its relationship to aging and cancer
inferredcites →https://doi.org/10.1038/ng.2271openalex-snapshot
Detectable clonal mosaicism from birth to old age and its relationship to cancer
inferredcites →https://doi.org/10.1038/ng.3215openalex-snapshot
The genomic and phenotypic diversity of Schizosaccharomyces pombe
inferredcites →https://doi.org/10.1038/nmeth.1628openalex-snapshot
CREST maps somatic structural variation in cancer genomes with base-pair resolution
inferredcites →https://doi.org/10.1038/nmeth.2089openalex-snapshot
NIH Image to ImageJ: 25 years of image analysis
inferredcites →https://doi.org/10.1038/nmeth.3893openalex-snapshot
Quantitative detection of low-abundance somatic structural variants in normal cells by high-throughput sequencing
inferredcites →https://doi.org/10.1038/nrg3961openalex-snapshot
R loops: new modulators of genome dynamics and function
inferredcites →https://doi.org/10.1038/s41467-017-01894-6openalex-snapshot
Eroded telomeres are rearranged in quiescent fission yeast cells through duplications of subtelomeric sequences
inferredcites →https://doi.org/10.1038/s41467-020-15880-yopenalex-snapshot
Nitrogen starvation reveals the mitotic potential of mutants in the S/MAPK pathways
inferredcites →https://doi.org/10.1038/s41598-017-16291-8openalex-snapshot
RNA metabolism is the primary target of formamide in vivo
inferredcites →https://doi.org/10.1073/pnas.1217505110openalex-snapshot
Lifespan of neurons is uncoupled from organismal lifespan
inferredcites →https://doi.org/10.1073/pnas.1315581110openalex-snapshot
Subnuclear relocalization and silencing of a chromosomal region by an ectopic ribosomal DNA repeat
inferredcites →https://doi.org/10.1073/pnas.1525465113openalex-snapshot
Functional architecture of the Reb1-Ter complex of Schizosaccharomyces pombe
inferredcites →https://doi.org/10.1073/pnas.1612422114openalex-snapshot
Conserved forkhead dimerization motif controls DNA replication timing and spatial organization of chromosomes in S. cerevisiae
inferredcites →https://doi.org/10.1073/pnas.45.1.30openalex-snapshot
ON THE NATURE OF THE AGING PROCESS
inferredcites →https://doi.org/10.1073/pnas.93.20.10913openalex-snapshot
A unique human gene that spans over 230 kb in the human chromosome 8p11-12 and codes multiple family proteins sharing RNA-binding motifs.
inferredcites →https://doi.org/10.1074/jbc.m412756200openalex-snapshot
Expression of a RecQ Helicase Homolog Affects Progression through Crisis in Fission Yeast Lacking Telomerase
inferredcites →https://doi.org/10.1093/bioinformatics/btp163openalex-snapshot
Biopython: freely available Python tools for computational molecular biology and bioinformatics
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btp394openalex-snapshot
Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/bts019openalex-snapshot
Detecting genomic indel variants with exact breakpoints in single- and paired-end sequencing data using SplazerS
inferredcites →https://doi.org/10.1093/bioinformatics/bts378openalex-snapshot
DELLY: structural variant discovery by integrated paired-end and split-read analysis
inferredcites →https://doi.org/10.1093/bioinformatics/bts484openalex-snapshot
PRISM: Pair-read informed split-read mapping for base-pair level detection of insertion, deletion and structural variants
inferredcites →https://doi.org/10.1093/bioinformatics/btu431openalex-snapshot
Gustaf: Detecting and correctly classifying SVs in the NGS twilight zone
inferredcites →https://doi.org/10.1093/emboj/21.3.195openalex-snapshot
The connection between transcription and genomic instability
inferredcites →https://doi.org/10.1093/gbe/evv238openalex-snapshot
Bulk Segregant Analysis Reveals the Genetic Basis of a Natural Trait Variation in Fission Yeast
inferredcites →https://doi.org/10.1093/genetics/162.1.45openalex-snapshot
The Scw1 RNA-Binding Domain Protein Regulates Septation and Cell-Wall Structure in Fission Yeast
inferredcites →https://doi.org/10.1093/nar/21.12.2955openalex-snapshot
Comparison ofSchizosaccharomyces pombeexpression systems
inferredcites →https://doi.org/10.1093/nar/25.4.904openalex-snapshot
Molecular cloning and analysis of Schizosaccharomyces pombe Reb1p: sequence-specific recognition of two sites in the far upstream rDNA intergenic spacer
inferredcites →https://doi.org/10.1093/nar/gkp335openalex-snapshot
MEME SUITE: tools for motif discovery and searching
inferredcites →https://doi.org/10.1093/nar/gkr853openalex-snapshot
PomBase: a comprehensive online resource for fission yeast
inferredcites →https://doi.org/10.1093/nar/gku1040openalex-snapshot
PomBase 2015: updates to the fission yeast database
inferredcites →https://doi.org/10.1093/nar/gkx555openalex-snapshot
Recruitment and delivery of the fission yeast Rst2 transcription factor via a local genome structure counteracts repression by Tup1-family corepressors
inferredcites →https://doi.org/10.1101/187609openalex-snapshot
Selective and mechanistic sources of recurrent rearrangements across the cancer genome
inferredcites →https://doi.org/10.1101/cshperspect.a016501openalex-snapshot
Regulation of Recombination and Genomic Maintenance
inferredcites →https://doi.org/10.1101/cshperspect.a019794openalex-snapshot
Thermally Dimorphic Human Fungal Pathogens—Polyphyletic Pathogens with a Convergent Pathogenicity Trait
inferredcites →https://doi.org/10.1101/gad.233221.113openalex-snapshot
Nucleosome loss leads to global transcriptional up-regulation and genomic instability during yeast aging
inferredcites →https://doi.org/10.1101/gad.242990.114openalex-snapshot
A double-edged sword: R loops as threats to genome integrity and powerful regulators of gene expression
inferredcites →https://doi.org/10.1101/gad.271288.115openalex-snapshot
Control of heterochromatin localization and silencing by the nuclear membrane protein Lem2
inferredcites →https://doi.org/10.1101/gad.280834.116openalex-snapshot
S1-DRIP-seq identifies high expression and polyA tracts as major contributors to R-loop formation
inferredcites →https://doi.org/10.1101/gad.311274.117openalex-snapshot
Yra1-bound RNA–DNA hybrids cause orientation-independent transcription–replication collisions and telomere instability
inferredcites →https://doi.org/10.1101/gad.315804openalex-snapshot
Two modes of DNA double-strand break repair are reciprocally regulated through the fission yeast cell cycle
inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
inferredcites →https://doi.org/10.1101/pdb.prot090985openalex-snapshot
Extraction of Chromosomal DNA from Schizosaccharomyces pombe
inferredcites →https://doi.org/10.1111/acel.12080openalex-snapshot
TORC 1 signaling inhibition by rapamycin and caffeine affect lifespan, global gene expression, and cell proliferation of fission yeast
inferredcites →https://doi.org/10.1111/j.1365-2443.2005.00917.xopenalex-snapshot
Distinct modes of DNA damage response in S. pombe G0 and vegetative cells
inferredcites →https://doi.org/10.1126/science.1079161openalex-snapshot
Aging and Genome Maintenance: Lessons from the Mouse?
inferredcites →https://doi.org/10.1126/science.141.3582.686openalex-snapshot
Biological Mechanisms Underlying the Aging Process
inferredcites →https://doi.org/10.1126/science.aaj2103openalex-snapshot
Aggregation of the Whi3 protein, not loss of heterochromatin, causes sterility in old yeast cells
inferredcites →https://doi.org/10.1128/ec.2.3.510-520.2003openalex-snapshot
Scw1p Antagonizes the Septation Initiation Network To Regulate Septum Formation and Cell Separation in the Fission Yeast Schizosaccharomyces pombe
inferredcites →https://doi.org/10.1146/annurev-biochem-060815-014908openalex-snapshot
Transcription as a Threat to Genome Integrity
inferredcites →https://doi.org/10.1146/annurev-genet-111212-133232openalex-snapshot
Causes of Genome Instability
inferredcites →https://doi.org/10.1146/annurev-genet-120215-035043openalex-snapshot
A Life Investigating Pathways That Repair Broken Chromosomes
inferredcites →https://doi.org/10.1146/annurev-physiol-030212-183715openalex-snapshot
Genome Instability and Aging
inferredcites →https://doi.org/10.1186/1471-2105-12-s14-s7openalex-snapshot
ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information
inferredcites →https://doi.org/10.1186/1471-2105-16-s18-s5openalex-snapshot
Analysis of genomic rearrangements by using the Burrows-Wheeler transform of short-read data
inferredcites →https://doi.org/10.1186/gb-2012-13-3-r22openalex-snapshot
An integrative probabilistic model for identification of structural variation in sequencing data
inferredcites →https://doi.org/10.1186/gb-2014-15-6-r84openalex-snapshot
LUMPY: a probabilistic framework for structural variant discovery
inferredcites →https://doi.org/10.1186/s13072-015-0018-4openalex-snapshot
Role of Ccr4-Not complex in heterochromatin formation at meiotic genes and subtelomeres in fission yeast
inferredcites →https://doi.org/10.1242/bio.20147245openalex-snapshot
Systematic screen for mutants resistant to TORC1 inhibition in fission yeast reveals genes involved in cellular ageing and growth
inferredcites →https://doi.org/10.1261/rna.065524.118openalex-snapshot
Long noncoding RNA repertoire and targeting by nuclear exosome, cytoplasmic exonuclease, and RNAi in fission yeast
inferredcites →https://doi.org/10.1371/journal.pcbi.1002638openalex-snapshot
High Resolution Genome Wide Binding Event Finding and Motif Discovery Reveals Transcription Factor Spatial Binding Constraints
inferredcites →https://doi.org/10.1371/journal.pgen.1000408openalex-snapshot
Pro-Aging Effects of Glucose Signaling through a G Protein-Coupled Glucose Receptor in Fission Yeast
inferredcites →https://doi.org/10.1371/journal.pgen.1003026openalex-snapshot
Microhomology Directs Diverse DNA Break Repair Pathways and Chromosomal Translocations
inferredcites →https://doi.org/10.1371/journal.pgen.1003794openalex-snapshot
Ultra-Sensitive Sequencing Reveals an Age-Related Increase in Somatic Mitochondrial Mutations That Are Inconsistent with Oxidative Damage
inferredcites →https://doi.org/10.1371/journal.pgen.1003990openalex-snapshot
Somatic mtDNA Mutation Spectra in the Aging Human Putamen
inferredcites →https://doi.org/10.1371/journal.pgen.1004086openalex-snapshot
Is Non-Homologous End-Joining Really an Inherently Error-Prone Process?
inferredcites →https://doi.org/10.1371/journal.pgen.1004511openalex-snapshot
Knock-In Reporter Mice Demonstrate that DNA Repair by Non-homologous End Joining Declines with Age
inferredcites →https://doi.org/10.1371/journal.pgen.1004684openalex-snapshot
Systematic Analysis of the Role of RNA-Binding Proteins in the Regulation of RNA Stability
inferredcites →https://doi.org/10.15252/embr.201745335openalex-snapshot
RNase H eliminates R‐loops that disrupt DNA replication but is nonessential for efficient DSB repair
inferredcites →https://doi.org/10.15252/msb.20145123openalex-snapshot
Natural genetic variation impacts expression levels of coding, non‐coding, and antisense transcripts in fission yeast
inferredcites →https://doi.org/10.1534/g3.111.001123openalex-snapshot
A Geographically Diverse Collection ofSchizosaccharomyces pombeIsolates Shows Limited Phenotypic Variation but Extensive Karyotypic Diversity
inferredcites →https://doi.org/10.1534/genetics.105.046144openalex-snapshot
Capture of Extranuclear DNA at Fission Yeast Double-Strand Breaks
inferredcites →https://doi.org/10.1534/genetics.107.071621openalex-snapshot
Microhomology-Mediated End Joining in Fission Yeast Is Repressed by Pku70 and Relies on Genes Involved in Homologous Recombination
inferredcites →https://doi.org/10.1534/genetics.118.301262openalex-snapshot
Uncovering Natural Longevity Alleles from Intercrossed Pools of Aging Fission Yeast Cells
inferredcites →https://doi.org/10.2183/pjab.90.119openalex-snapshot
Ribosomal RNA gene repeats, their stability and cellular senescence
inferredcites →https://doi.org/10.3389/fgene.2013.00048openalex-snapshot
Alternative end-joining mechanisms: a historical perspective
inferredcites →https://doi.org/10.3389/fgene.2015.00330openalex-snapshot
AnGeLi: A Tool for the Analysis of Gene Lists from Fission Yeast
inferredcites →https://doi.org/10.6084/m9.figshare.963153.v1openalex-snapshot
Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM
inferredcites →https://doi.org/10.7554/elife.20340openalex-snapshot
An aging-independent replicative lifespan in a symmetrically dividing eukaryote
inferredcites →https://doi.org/10.7554/elife.20533openalex-snapshot
RNase H enables efficient repair of R-loop induced DNA damage
inferredcites →https://doi.org/10.7554/elife.27469openalex-snapshot
Quiescence unveils a novel mutational force in fission yeast
inferredcites →https://doi.org/10.7554/elife.32421openalex-snapshot
Transgenerational dynamics of rDNA copy number in Drosophila male germline stem cells
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1038/s43587-023-00527-6openalex-snapshot
The Information Theory of Aging
Editorial review for independent work. ICSAC — the Institute for Complexity
Science and Advanced Computing — runs a structured editorial panel for researchers
publishing outside journals, and publishes on CiteStamp rails. Submission is free
and goes through ORCID: icsacinstitute.org/submit.