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Maltotriose consumption by hybrid Saccharomyces pastorianus is heterotic and results from regulatory cross-talk between parental sub-genomes

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Tandemly Repeated 147 bp Elements Cause Structural and Functional Variation in DivergentMAL Promoters ofSaccharomyces cerevisiae

inferredcites →https://doi.org/10.1002/9780470166215.ch3openalex-snapshot

The Temperature‐Dependence of E a

inferredcites →https://doi.org/10.1002/yea.1279openalex-snapshot

Maltotriose utilization in lager yeast strains: MTT1 encodes a maltotriose transporter

inferredcites →https://doi.org/10.1002/yea.1888openalex-snapshot

Identification of regulatory elements in the AGT1 promoter of ale and lager strains of brewer's yeast

inferredcites →https://doi.org/10.1002/yea.2960openalex-snapshot

Comparative physiology and fermentation performance of Saaz and Frohberg lager yeast strains and the parental species Saccharomyces eubayanus

inferredcites →https://doi.org/10.1002/yea.320080703openalex-snapshot

Effect of benzoic acid on metabolic fluxes in yeasts: A continuous‐culture study on the regulation of respiration and alcoholic fermentation

inferredcites →https://doi.org/10.1002/yea.3214openalex-snapshot

The regulatable MAL32 promoter in Saccharomyces cerevisiae : characteristics and tools to facilitate its use

inferredcites →https://doi.org/10.1002/yea.3246openalex-snapshot

Alternative Saccharomyces interspecies hybrid combinations and their potential for low‐temperature wort fermentation

inferredcites →https://doi.org/10.1007/978-1-4939-3572-7_13openalex-snapshot

Optimizing RNA-Seq Mapping with STAR

inferredcites →https://doi.org/10.1007/bf00351724openalex-snapshot

The UASMAL is a bidirectional promotor element required for the expression of both the MAL61 and MAL62 genes of the Saccharomyces MAL6 locus

inferredcites →https://doi.org/10.1007/s00253-016-8007-5openalex-snapshot

Novel brewing yeast hybrids: creation and application

inferredcites →https://doi.org/10.1007/s10295-015-1597-6openalex-snapshot

New lager yeast strains generated by interspecific hybridization

inferredcites →https://doi.org/10.1007/s12010-012-9560-8openalex-snapshot

Effects of Wort Gravity and Nitrogen Level on Fermentation Performance of Brewer’s Yeast and the Formation of Flavor Volatiles

inferredcites →https://doi.org/10.1016/j.biotechadv.2017.03.003openalex-snapshot

Brewing up a storm: The genomes of lager yeasts and how they evolved

inferredcites →https://doi.org/10.1016/j.cell.2016.08.020openalex-snapshot

Domestication and Divergence of Saccharomyces cerevisiae Beer Yeasts

inferredcites →https://doi.org/10.1016/j.cub.2010.04.027openalex-snapshot

Rapid Expansion and Functional Divergence of Subtelomeric Gene Families in Yeasts

inferredcites →https://doi.org/10.1016/j.cub.2014.04.031openalex-snapshot

Evidence for a Far East Asian origin of lager beer yeast

inferredcites →https://doi.org/10.1016/j.ymben.2011.06.001openalex-snapshot

Increasing free-energy (ATP) conservation in maltose-grown Saccharomyces cerevisiae by expression of a heterologous maltose phosphorylase

inferredcites →https://doi.org/10.1016/j.ymben.2017.11.012openalex-snapshot

Combined engineering of disaccharide transport and phosphorolysis for enhanced ATP yield from sucrose fermentation in Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1016/s0065-2318(08)60337-6openalex-snapshot

The Utilization of Sugars by Yeasts

inferredcites →https://doi.org/10.1016/s0580-9517(06)36025-4openalex-snapshot

25 Yeast Genetic Strain and Plasmid Collections

inferredcites →https://doi.org/10.1021/sb500366vopenalex-snapshot

A Highly Characterized Yeast Toolkit for Modular, Multipart Assembly

inferredcites →https://doi.org/10.1038/nprot.2007.13openalex-snapshot

High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method

inferredcites →https://doi.org/10.1038/nprot.2013.099openalex-snapshot

Count-based differential expression analysis of RNA sequencing data using R and Bioconductor

inferredcites →https://doi.org/10.1038/sj.jim.7000158openalex-snapshot

Maltotriose fermentation by Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1046/j.1365-2672.1999.00653.xopenalex-snapshot

Characterization ofSaccharomyces cerevisiaestrains from spontaneously fermented maize dough by profiles of assimilation, chromosome polymorphism, PCR andMALgenotyping

inferredcites →https://doi.org/10.1073/pnas.1105430108openalex-snapshot

Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast

inferredcites →https://doi.org/10.1074/jbc.m410573200openalex-snapshot

Two-dimensional Transcriptome Analysis in Chemostat Cultures

inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot

Fast and accurate short read alignment with Burrows–Wheeler transform

inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot

edgeR : a Bioconductor package for differential expression analysis of digital gene expression data

inferredcites →https://doi.org/10.1093/bioinformatics/btp698openalex-snapshot

Fast and accurate long-read alignment with Burrows–Wheeler transform

inferredcites →https://doi.org/10.1093/bioinformatics/btu638openalex-snapshot

HTSeq—a Python framework to work with high-throughput sequencing data

inferredcites →https://doi.org/10.1093/dnares/dsp003openalex-snapshot

Genome Sequence of the Lager Brewing Yeast, an Interspecies Hybrid

inferredcites →https://doi.org/10.1093/dnares/dsv037openalex-snapshot

Next-generation sequencing analysis of lager brewing yeast strains reveals the evolutionary history of interspecies hybridization

inferredcites →https://doi.org/10.1093/femsyr/fov005openalex-snapshot

S. cerevisiae × S. eubayanus interspecific hybrid, the best of both worlds and beyond

inferredcites →https://doi.org/10.1093/femsyr/fow017openalex-snapshot

Alternative reactions at the interface of glycolysis and citric acid cycle inSaccharomyces cerevisiae

inferredcites →https://doi.org/10.1093/femsyr/fox006openalex-snapshot

Elimination of sucrose transport and hydrolysis in Saccharomyces cerevisiae: a platform strain for engineering sucrose metabolism

inferredcites →https://doi.org/10.1093/femsyr/fox074openalex-snapshot

Nanopore sequencing enables near-complete de novo assembly of Saccharomyces cerevisiae reference strain CEN.PK113-7D

inferredcites →https://doi.org/10.1093/femsyr/foy012openalex-snapshot

Genome editing in Kluyveromyces and Ogataea yeasts using a broad-host-range Cas9/gRNA co-expression plasmid

inferredcites →https://doi.org/10.1093/femsyr/foy056openalex-snapshot

Laboratory evolution for forced glucose-xylose co-consumption enables identification of mutations that improve mixed-sugar fermentation by xylose-fermenting Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1093/femsyr/foy065openalex-snapshot

Trans-regulation and localization of orthologous maltose transporters in the interspecies lager yeast hybrid

inferredcites →https://doi.org/10.1093/genetics/122.2.307openalex-snapshot

Molecular evolution of the telomere-associated MAL loci of Saccharomyces.

inferredcites →https://doi.org/10.1093/genetics/136.3.803openalex-snapshot

Genetic variation of the repeated MAL loci in natural populations of Saccharomyces cerevisiae and Saccharomyces paradoxus.

inferredcites →https://doi.org/10.1093/molbev/msv168openalex-snapshot

The Genome Sequence ofSaccharomyces eubayanusand the Domestication of Lager-Brewing Yeasts

inferredcites →https://doi.org/10.1093/nar/gkl200openalex-snapshot

AUGUSTUS: ab initio prediction of alternative transcripts

inferredcites →https://doi.org/10.1093/nar/gks042openalex-snapshot

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

inferredcites →https://doi.org/10.1094/asbcj-52-0041openalex-snapshot

Factors Influencing Maltotriose Utilization During Brewery Wort Fermentations

inferredcites →https://doi.org/10.1101/476929openalex-snapshot

Laboratory evolution of a Saccharomyces cerevisiae x S. eubayanus hybrid under simulated lager-brewing conditions: genetic diversity and phenotypic convergence

inferredcites →https://doi.org/10.1101/gr.076075.108openalex-snapshot

Reconstruction of the genome origins and evolution of the hybrid lager yeast Saccharomyces pastorianus

inferredcites →https://doi.org/10.1101/gr.215087.116openalex-snapshot

Canu: scalable and accurate long-read assembly via adaptive k -mer weighting and repeat separation

inferredcites →https://doi.org/10.1101/gr.2289704openalex-snapshot

Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements

inferredcites →https://doi.org/10.1111/1567-1364.12018openalex-snapshot

Rapid identification ofSaccharomyces eubayanusand its hybrids

inferredcites →https://doi.org/10.1111/1567-1364.12024openalex-snapshot

amdSYM, a new dominant recyclable marker cassette forSaccharomyces cerevisiae

inferredcites →https://doi.org/10.1111/1567-1364.12051openalex-snapshot

Functional analysis and transcriptional regulation of two orthologs ofARO10, encoding broad-substrate-specificity 2-oxo-acid decarboxylases, in the brewing yeastSaccharomyces pastorianusCBS1483

inferredcites →https://doi.org/10.1111/1758-2229.12724openalex-snapshot

Targeted metagenomics approach to capture the biodiversity of Saccharomyces genus in wild environments

inferredcites →https://doi.org/10.1111/j.1365-2958.1995.mmi_17061093.xopenalex-snapshot

Characterization of AGT1 encoding a general α‐glucoside transporter from Saccharomyces

inferredcites →https://doi.org/10.1111/j.1567-1364.2010.00627.xopenalex-snapshot

The temperature dependence of maltose transport in ale and lager strains of brewer's yeast

inferredcites →https://doi.org/10.1111/jipb.12152openalex-snapshot

Self‐processing of ribozyme‐flanked RNAs into guide RNAs in vitro and in vivo for CRISPR‐mediated genome editing

inferredcites →https://doi.org/10.1111/lam.12011openalex-snapshot

Characterization of maltotriose transporters from theSaccharomyces eubayanussubgenome of the hybridSaccharomyces pastorianuslager brewing yeast strain Weihenstephan 34/70

inferredcites →https://doi.org/10.1128/aem.01263-15openalex-snapshot

Chromosomal Copy Number Variation in Saccharomyces pastorianus Is Evidence for Extensive Genome Dynamics in Industrial Lager Brewing Strains

inferredcites →https://doi.org/10.1128/aem.01558-08openalex-snapshot

Improved Fermentation Performance of a Lager Yeast after Repair of Its AGT1 Maltose and Maltotriose Transporter Genes

inferredcites →https://doi.org/10.1128/aem.02268-08openalex-snapshot

Novel Evolutionary Engineering Approach for Accelerated Utilization of Glucose, Xylose, and Arabinose Mixtures by Engineered Saccharomyces cerevisiae Strains

inferredcites →https://doi.org/10.1128/aem.02464-15openalex-snapshot

A Large Set of Newly Created Interspecific Saccharomyces Hybrids Increases Aromatic Diversity in Lager Beers

inferredcites →https://doi.org/10.1128/aem.02570-07openalex-snapshot

Molecular Analysis of Maltotriose Active Transport and Fermentation by Saccharomyces cerevisiae Reveals a Determinant Role for the AGT1 Permease

inferredcites →https://doi.org/10.1128/aem.68.5.2095-2100.2002openalex-snapshot

Auxotrophic Yeast Strains in Fundamental and Applied Research

inferredcites →https://doi.org/10.1128/aem.71.12.7846-7857.2005openalex-snapshot

Characterization and Functional Analysis of the MAL and MPH Loci for Maltose Utilization in Some Ale and Lager Yeast Strains

inferredcites →https://doi.org/10.1128/aem.71.9.5044-5049.2005openalex-snapshot

Maltotriose Utilization by Industrial Saccharomyces Strains: Characterization of a New Member of the α-Glucoside Transporter Family

inferredcites →https://doi.org/10.1128/jb.173.5.1817-1820.1991openalex-snapshot

MAL11 and MAL61 encode the inducible high-affinity maltose transporter of Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1186/1471-2105-10-421openalex-snapshot

BLAST+: architecture and applications

inferredcites →https://doi.org/10.1186/1471-2105-12-491openalex-snapshot

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

inferredcites →https://doi.org/10.1186/1471-2105-5-59openalex-snapshot

Gene finding in novel genomes

inferredcites →https://doi.org/10.1186/s12864-019-6263-3openalex-snapshot

Chromosome level assembly and comparative genome analysis confirm lager-brewing yeasts originated from a single hybridization

inferredcites →https://doi.org/10.1186/s12934-017-0835-1openalex-snapshot

CRISPR-Cas9 mediated gene deletions in lager yeast Saccharomyces pastorianus

inferredcites →https://doi.org/10.1371/journal.pgen.1000485openalex-snapshot

Additions, Losses, and Rearrangements on the Evolutionary Route from a Reconstructed Ancestor to the Modern Saccharomyces cerevisiae Genome

inferredcites →https://doi.org/10.1371/journal.pgen.1006155openalex-snapshot

Complex Ancestries of Lager-Brewing Hybrids Were Shaped by Standing Variation in the Wild Yeast Saccharomyces eubayanus

inferredcites →https://doi.org/10.1371/journal.pgen.1007786openalex-snapshot

Evolution of a novel chimeric maltotriose transporter in Saccharomyces eubayanus from parent proteins unable to perform this function

inferredcites →https://doi.org/10.1371/journal.pgen.1007853openalex-snapshot

In vivo recombination of Saccharomyces eubayanus maltose-transporter genes yields a chimeric transporter that enables maltotriose fermentation

inferredcites →https://doi.org/10.1371/journal.pone.0003647openalex-snapshot

A One Pot, One Step, Precision Cloning Method with High Throughput Capability

inferredcites →https://doi.org/10.1371/journal.pone.0025821openalex-snapshot

Deciphering the Hybridisation History Leading to the Lager Lineage Based on the Mosaic Genomes of Saccharomyces bayanus Strains NBRC1948 and CBS380T

inferredcites →https://doi.org/10.1371/journal.pone.0112963openalex-snapshot

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

inferredcites →https://doi.org/10.1534/g3.113.010090openalex-snapshot

Genome Sequence of Saccharomyces carlsbergensis, the World’s First Pure Culture Lager Yeast

inferredcites →https://doi.org/10.1534/genetics.118.301050openalex-snapshot

Extraordinary Genome Instability and Widespread Chromosome Rearrangements During Vegetative Growth

inferredcites →https://doi.org/10.3389/fmicb.2017.01690openalex-snapshot

Evolutionary Engineering in Chemostat Cultures for Improved Maltotriose Fermentation Kinetics in Saccharomyces pastorianus Lager Brewing Yeast

inferredcites →https://doi.org/10.3389/fmicb.2018.01786openalex-snapshot

Structural, Physiological and Regulatory Analysis of Maltose Transporter Genes in Saccharomyces eubayanus CBS 12357T

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1093/femsyr/foaa008openalex-snapshot

Into the wild: new yeast genomes from natural environments and new tools for their analysis

inferred← citeshttps://doi.org/10.1146/annurev-food-032519-051715openalex-snapshot

Adaptive Laboratory Evolution of Ale and Lager Yeasts for Improved Brewing Efficiency and Beer Quality

inferred← citeshttps://doi.org/10.1371/journal.pgen.1008680openalex-snapshot

Postglacial migration shaped the genomic diversity and global distribution of the wild ancestor of lager-brewing hybrids

inferred← citeshttps://doi.org/10.1371/journal.pgen.1011154openalex-snapshot

Wild Patagonian yeast improve the evolutionary potential of novel interspecific hybrid strains for lager brewing

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