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Cryptic Patterns of Speciation in Cryptic Primates: Microendemic Mouse Lemurs and the Multispecies Coalescent
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/ajp.20592openalex-snapshot
Exceptional diversity of mouse lemurs (Microcebus spp.) in the Makira region with the description of one new species
inferredcites →https://doi.org/10.1002/ajp.22423openalex-snapshot
Unpredictable environments, opportunistic responses: Reproduction and population turnover in two wild mouse lemur species (Microcebus rufus and M. griseorufus) from eastern and western Madagascar
inferredcites →https://doi.org/10.1002/ajp.22874openalex-snapshot
Variation in reproduction of the smallest‐bodied primate radiation, the mouse lemurs ( Microcebus spp.): A synopsis
inferredcites →https://doi.org/10.1002/ajp.23062openalex-snapshot
An empirical estimate of the generation time of mouse lemurs
inferredcites →https://doi.org/10.1002/ajp.23070openalex-snapshot
Genetic and morphological diversity of mouse lemurs (Microcebus spp.) in northern Madagascar: The discovery of a putative new species?
inferredcites →https://doi.org/10.1002/ece3.1418openalex-snapshot
Shifting ranges and conservation challenges for lemurs in the face of climate change
inferredcites →https://doi.org/10.1002/evan.20126openalex-snapshot
Madagascar's Lemurs: Cryptic diversity or taxonomic inflation?
inferredcites →https://doi.org/10.1002/evan.21388openalex-snapshot
Species concepts, diversity, and evolution in primates: Lessons to be learned from mouse lemurs
inferredcites →https://doi.org/10.1007/s002650100402openalex-snapshot
Sociogenetic structure in a free-living nocturnal primate population: sex-specific differences in the grey mouse lemur ( Microcebus murinus )
inferredcites →https://doi.org/10.1007/s10531-020-01965-zopenalex-snapshot
Identification of crucial stepping stone habitats for biodiversity conservation in northeastern Madagascar using remote sensing and comparative predictive modeling
inferredcites →https://doi.org/10.1007/s10764-006-9036-1openalex-snapshot
Revision of the Mouse Lemurs (Microcebus) of Eastern Madagascar
inferredcites →https://doi.org/10.1016/j.tig.2012.03.009openalex-snapshot
The genomics of speciation-with-gene-flow
inferredcites →https://doi.org/10.1016/j.tree.2006.11.004openalex-snapshot
Cryptic species as a window on diversity and conservation
inferredcites →https://doi.org/10.1016/j.tree.2012.04.012openalex-snapshot
Coalescent-based species delimitation in an integrative taxonomy
inferredcites →https://doi.org/10.1016/j.tree.2019.01.012openalex-snapshot
The Ecology of Nonecological Speciation and Nonadaptive Radiations
inferredcites →https://doi.org/10.1016/j.ympev.2006.10.026openalex-snapshot
The ever-increasing diversity in mouse lemurs: Three new species in north and northwestern Madagascar
inferredcites →https://doi.org/10.1016/j.ympev.2007.03.005openalex-snapshot
Multiple nuclear loci reveal patterns of incomplete lineage sorting and complex species history within western mouse lemurs (Microcebus)
inferredcites →https://doi.org/10.1016/j.ympev.2019.106646openalex-snapshot
Estimating uncertainty in divergence times among three-spined stickleback clades using the multispecies coalescent
inferredcites →https://doi.org/10.1016/s0031-0182(00)00242-xopenalex-snapshot
Late Quaternary environmental changes from a pollen and diatom record in the southern tropics (Lake Tritrivakely, Madagascar)
inferredcites →https://doi.org/10.1017/s0030605305000128openalex-snapshot
Updated estimates of biotic diversity and endemism for Madagascar
inferredcites →https://doi.org/10.1023/a:1005511129475openalex-snapshot
Taxonomic Revision of Mouse Lemurs (Microcebus) in the Western Portions of Madagascar
inferredcites →https://doi.org/10.1038/35002501openalex-snapshot
Biodiversity hotspots for conservation priorities
inferredcites →https://doi.org/10.1038/hdy.2015.104openalex-snapshot
On the importance of being structured: instantaneous coalescence rates and human evolution—lessons for ancestral population size inference?
inferredcites →https://doi.org/10.1038/nature01489openalex-snapshot
Fossil evidence for an ancient divergence of lorises and galagos
inferredcites →https://doi.org/10.1038/ng.806openalex-snapshot
A framework for variation discovery and genotyping using next-generation DNA sequencing data
inferredcites →https://doi.org/10.1038/ng.937openalex-snapshot
Bayesian inference of ancient human demography from individual genome sequences
inferredcites →https://doi.org/10.1038/s41437-017-0005-6openalex-snapshot
The IICR (inverse instantaneous coalescence rate) as a summary of genomic diversity: insights into demographic inference and model choice
inferredcites →https://doi.org/10.1038/s41437-018-0148-0openalex-snapshot
The IICR and the non-stationary structured coalescent: towards demographic inference with arbitrary changes in population structure
inferredcites →https://doi.org/10.1038/s41559-017-0453-7openalex-snapshot
A southern African origin and cryptic structure in the highly mobile plains zebra
inferredcites →https://doi.org/10.1038/s41598-018-24120-9openalex-snapshot
Testing the impact of effective population size on speciation rates – a negative correlation or lack thereof in lichenized fungi
inferredcites →https://doi.org/10.1038/sj.hdy.6800447openalex-snapshot
Recent developments in genetic data analysis: what can they tell us about human demographic history?
inferredcites →https://doi.org/10.1046/j.1365-2699.1997.00146.xopenalex-snapshot
Environmental change, extinction and human activity: evidence from caves in NW Madagascar
inferredcites →https://doi.org/10.1073/pnas.0913022107openalex-snapshot
Bayesian species delimitation using multilocus sequence data
inferredcites →https://doi.org/10.1073/pnas.1031673100openalex-snapshot
A molecular approach to comparative phylogeography of extant Malagasy lemurs
inferredcites →https://doi.org/10.1073/pnas.1200153109openalex-snapshot
Genetic data suggest a natural prehuman origin of open habitats in northern Madagascar and question the deforestation narrative in this region
inferredcites →https://doi.org/10.1073/pnas.1200567109openalex-snapshot
Effect of ancient population structure on the degree of polymorphism shared between modern human populations and ancient hominins
inferredcites →https://doi.org/10.1073/pnas.1601081113openalex-snapshot
Geogenetic patterns in mouse lemurs (genus Microcebus ) reveal the ghosts of Madagascar's forests past
inferredcites →https://doi.org/10.1073/pnas.1607921114openalex-snapshot
Multispecies coalescent delimits structure, not species
inferredcites →https://doi.org/10.1073/pnas.1720554115openalex-snapshot
A comprehensive genomic history of extinct and living elephants
inferredcites →https://doi.org/10.1073/pnas.200121897openalex-snapshot
Remarkable species diversity in Malagasy mouse lemurs (primates, Microcebus )
inferredcites →https://doi.org/10.1080/10635150390235557openalex-snapshot
Comparison of Likelihood and Bayesian Methods for Estimating Divergence Times Using Multiple Gene Loci and Calibration Points, with Application to a Radiation of Cute-Looking Mouse Lemur Species
inferredcites →https://doi.org/10.1080/10635150701701083openalex-snapshot
Species Concepts and Species Delimitation
inferredcites →https://doi.org/10.1080/14772000.2020.1730475openalex-snapshot
Coalescent-based species delimitation is sensitive to geographic sampling and isolation by distance
inferredcites →https://doi.org/10.1086/286201openalex-snapshot
On the Evolution of Premating Isolation after a Founder Event
inferredcites →https://doi.org/10.1093/bioinformatics/btq683openalex-snapshot
Scaffolding pre-assembled contigs using SSPACE
inferredcites →https://doi.org/10.1093/bioinformatics/btr521openalex-snapshot
adegenet 1.3-1 : new tools for the analysis of genome-wide SNP data
inferredcites →https://doi.org/10.1093/bioinformatics/btt476openalex-snapshot
The MaSuRCA genome assembler
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btu041openalex-snapshot
ngsTools: methods for population genetics analyses from next-generation sequencing data
inferredcites →https://doi.org/10.1093/bioinformatics/btu530openalex-snapshot
Quartet Inference from SNP Data Under the Coalescent Model
inferredcites →https://doi.org/10.1093/biolinnean/blz164openalex-snapshot
Late Miocene origin and recent population collapse of the Malagasy savanna olive tree (Noronhia lowryi)
inferredcites →https://doi.org/10.1093/czoolo/61.5.874openalex-snapshot
The impact of ancestral population size and incomplete lineage sorting on Bayesian estimation of species divergence times
inferredcites →https://doi.org/10.1093/gbe/evz113openalex-snapshot
Genome-wide SNP Data Reveal an Overestimation of Species Diversity in a Group of Hawkmoths
inferredcites →https://doi.org/10.1093/gbe/evz200openalex-snapshot
Comparative Genomic Analysis of the Pheromone Receptor Class 1 Family (V1R) Reveals Extreme Complexity in Mouse Lemurs (Genus, Microcebus) and a Chromosomal Hotspot across Mammals
inferredcites →https://doi.org/10.1093/genetics/164.4.1645openalex-snapshot
Bayes Estimation of Species Divergence Times and Ancestral Population Sizes Using DNA Sequences From Multiple Loci
inferredcites →https://doi.org/10.1093/molbev/mss086openalex-snapshot
Inferring Species Trees Directly from Biallelic Genetic Markers: Bypassing Gene Trees in a Full Coalescent Analysis
inferredcites →https://doi.org/10.1093/molbev/msy147openalex-snapshot
Species Tree Inference with BPP Using Genomic Sequences and the Multispecies Coalescent
inferredcites →https://doi.org/10.1093/molbev/msz191openalex-snapshot
Contemporary Demographic Reconstruction Methods Are Robust to Genome Assembly Quality: A Case Study in Tasmanian Devils
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040517openalex-snapshot
Relationships between gene trees and species trees.
inferredcites →https://doi.org/10.1093/sysbio/syq024openalex-snapshot
Species Delimitation Using a Combined Coalescent and Information-Theoretic Approach: An Example from North American Myotis Bats
inferredcites →https://doi.org/10.1093/sysbio/syt069openalex-snapshot
Species Delimitation Using Bayes Factors: Simulations and Application to the Sceloporus scalaris Species Group (Squamata: Phrynosomatidae)
inferredcites →https://doi.org/10.1093/sysbio/syt106openalex-snapshot
Upstream Analyses Create Problems with DNA-Based Species Delimitation
inferredcites →https://doi.org/10.1093/sysbio/syu018openalex-snapshot
Species Delimitation using Genome-Wide SNP Data
inferredcites →https://doi.org/10.1093/sysbio/syw063openalex-snapshot
Maximum Likelihood Implementation of an Isolation-with-Migration Model for Three Species
inferredcites →https://doi.org/10.1093/sysbio/syw117openalex-snapshot
Species Delimitation with Gene Flow
inferredcites →https://doi.org/10.1093/sysbio/syx073openalex-snapshot
Impact of Model Violations on the Inference of Species Boundaries Under the Multispecies Coalescent
inferredcites →https://doi.org/10.1093/sysbio/syx085openalex-snapshot
Coestimating Reticulate Phylogenies and Gene Trees from Multilocus Sequence Data
inferredcites →https://doi.org/10.1093/sysbio/syy001openalex-snapshot
Using Phylogenomic Data to Explore the Effects of Relaxed Clocks and Calibration Strategies on Divergence Time Estimation: Primates as a Test Case
inferredcites →https://doi.org/10.1093/sysbio/syy006openalex-snapshot
Bayesian Divergence-Time Estimation with Genome-Wide Single-Nucleotide Polymorphism Data of Sea Catfishes (Ariidae) Supports Miocene Closure of the Panamanian Isthmus
inferredcites →https://doi.org/10.1093/sysbio/syy011openalex-snapshot
Comparison of Methods for Molecular Species Delimitation Across a Range of Speciation Scenarios
inferredcites →https://doi.org/10.1093/sysbio/syy051openalex-snapshot
The Spectre of Too Many Species
inferredcites →https://doi.org/10.1093/sysbio/syz027openalex-snapshot
Dense Geographic and Genomic Sampling Reveals Paraphyly and a Cryptic Lineage in a Classic Sibling Species Complex
inferredcites →https://doi.org/10.1093/sysbio/syz042openalex-snapshot
The Multispecies Coalescent Over-Splits Species in the Case of Geographically Widespread Taxa
inferredcites →https://doi.org/10.1098/rspb.2013.2765openalex-snapshot
Species detection and individual assignment in species delimitation: can integrative data increase efficacy?
inferredcites →https://doi.org/10.1098/rspb.2014.1929openalex-snapshot
Dispersal and the transition to sympatry in vertebrates
inferredcites →https://doi.org/10.1098/rspb.2015.2262openalex-snapshot
Madagascar's grasses and grasslands: anthropogenic or natural?
inferredcites →https://doi.org/10.1098/rspb.2019.1311openalex-snapshot
The conundrum of species delimitation: a genomic perspective on a mitogenetically super-variable butterfly
inferredcites →https://doi.org/10.1101/724880openalex-snapshot
Pedigree-based measurement of the de novo mutation rate in the gray mouse lemur reveals a high mutation rate, few mutations in CpG sites, and a weak sex bias
inferredcites →https://doi.org/10.1101/gr.094052.109openalex-snapshot
Fast model-based estimation of ancestry in unrelated individuals
inferredcites →https://doi.org/10.1111/1755-0998.12745openalex-snapshot
dartr : An r package to facilitate analysis of SNP data generated from reduced representation genome sequencing
inferredcites →https://doi.org/10.1111/1755-0998.12990openalex-snapshot
Genotype‐free estimation of allele frequencies reduces bias and improves demographic inference from RADSeq data
inferredcites →https://doi.org/10.1111/j.1420-9101.2005.00989.xopenalex-snapshot
Timing and tempo of primate speciation
inferredcites →https://doi.org/10.1111/j.1471-8286.2004.00828.xopenalex-snapshot
hierfstat , a package for r to compute and test hierarchical F ‐statistics
inferredcites →https://doi.org/10.1111/j.1558-5646.1993.tb01257.xopenalex-snapshot
LABORATORY EXPERIMENTS ON SPECIATION: WHAT HAVE WE LEARNED IN 40 YEARS?
inferredcites →https://doi.org/10.1111/j.1558-5646.2008.00589.xopenalex-snapshot
DRIFT PROMOTES SPECIATION BY SEXUAL SELECTION
inferredcites →https://doi.org/10.1111/jbi.13147openalex-snapshot
Grass diversification in Madagascar: In situ radiation of two large C3 shade clades and support for a Miocene to Pliocene origin of C4 grassy biomes
inferredcites →https://doi.org/10.1111/jeb.12246openalex-snapshot
The role of founder effects on the evolution of reproductive isolation
inferredcites →https://doi.org/10.1111/mec.12636openalex-snapshot
Revisiting comparisons of genetic diversity in stable and declining species: assessing genome‐wide polymorphism in N orth A merican bumble bees using RAD sequencing
inferredcites →https://doi.org/10.1111/mec.12889openalex-snapshot
Influence of gene flow on divergence dating – implications for the speciation history of Takydromus grass lizards
inferredcites →https://doi.org/10.1111/mec.14173openalex-snapshot
Climate change and human colonization triggered habitat loss and fragmentation in Madagascar
inferredcites →https://doi.org/10.1111/mec.14792openalex-snapshot
These aren’t the loci you’e looking for: Principles of effective SNP filtering for molecular ecologists
inferredcites →https://doi.org/10.1111/mec.14869openalex-snapshot
RADseq data reveal ancient, but not pervasive, introgression between Californian tree and scrub oak species (Quercussect.Quercus: Fagaceae)
inferredcites →https://doi.org/10.1126/sciadv.1600946openalex-snapshot
Impending extinction crisis of the world’s primates: Why primates matter
inferredcites →https://doi.org/10.1126/science.1122806openalex-snapshot
Biogeographic Evolution of Madagascar's Microendemic Biota
inferredcites →https://doi.org/10.1159/000021571openalex-snapshot
Sympatric Mouse Lemurs in Nort-West Madagascar: A New Rufous Mouse Lemur Species (Microcebus ravelobensis)
inferredcites →https://doi.org/10.1177/0309133306071146openalex-snapshot
Late Quaternary paleoenvironmental changes in East Africa: a review of multiproxy evidence from palynology, lake sediments, and associated records
inferredcites →https://doi.org/10.1186/1741-7007-6-19openalex-snapshot
Acoustic divergence in the communication of cryptic species of nocturnal primates (Microcebus ssp.)
inferredcites →https://doi.org/10.1186/gb-2009-10-3-r25openalex-snapshot
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
inferredcites →https://doi.org/10.1186/s12859-014-0356-4openalex-snapshot
ANGSD: Analysis of Next Generation Sequencing Data
inferredcites →https://doi.org/10.1186/s13104-015-1261-2openalex-snapshot
Exploring the utility of cross-laboratory RAD-sequencing datasets for phylogenetic analysis
inferredcites →https://doi.org/10.1371/journal.pbio.3000494openalex-snapshot
Inferring the mammal tree: Species-level sets of phylogenies for questions in ecology, evolution, and conservation
inferredcites →https://doi.org/10.1371/journal.pgen.1008552openalex-snapshot
Tracking human population structure through time from whole genome sequences
inferredcites →https://doi.org/10.1371/journal.pone.0009883openalex-snapshot
Delimiting Species without Nuclear Monophyly in Madagascar's Mouse Lemurs
inferredcites →https://doi.org/10.1371/journal.pone.0037558openalex-snapshot
SNP Calling, Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data
inferredcites →https://doi.org/10.1371/journal.pone.0062992openalex-snapshot
The Confounding Effect of Population Structure on Bayesian Skyline Plot Inferences of Demographic History
inferredcites →https://doi.org/10.1371/journal.pone.0109528openalex-snapshot
Teeth, Sex, and Testosterone: Aging in the World's Smallest Primate
inferredcites →https://doi.org/10.1534/genetics.110.118661openalex-snapshot
The Confounding Effects of Population Structure, Genetic Diversity and the Sampling Scheme on the Detection and Quantification of Population Size Changes
inferredcites →https://doi.org/10.1534/genetics.112.145037openalex-snapshot
Ancient Admixture in Human History
inferredcites →https://doi.org/10.1534/genetics.112.149039openalex-snapshot
Improved Reversible Jump Algorithms for Bayesian Species Delimitation
inferredcites →https://doi.org/10.1534/genetics.113.154138openalex-snapshot
Estimating Individual Admixture Proportions from Next Generation Sequencing Data
inferredcites →https://doi.org/10.1534/genetics.115.183665openalex-snapshot
RAD Capture (Rapture): Flexible and Efficient Sequence-Based Genotyping
inferredcites →https://doi.org/10.1644/14-mamm-a-107openalex-snapshot
Sex-biased dispersal produces high error rates in mitochondrial distance-based and tree-based species delimitation
inferredcites →https://doi.org/10.1896/052.023.0103openalex-snapshot
Revision of the Mouse Lemurs,Microcebus(Primates, Lemuriformes), of Northern and Northwestern Madagascar with Descriptions of Two New Species at Montagne d'Ambre National Park and Antafondro Classified Forest
inferredcites →https://doi.org/10.7717/peerj.9939openalex-snapshot
An empirical examination of sample size effects on population demographic estimates in birds using single nucleotide polymorphism (SNP) data
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1186/s12862-021-01929-zopenalex-snapshot
Impact of model assumptions on demographic inferences: the case study of two sympatric mouse lemurs in northwestern Madagascar
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